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The map label for this gene is yggS [C]

Identifier: 209694136

GI number: 209694136

Start: 596942

End: 597709

Strand: Reverse

Name: yggS [C]

Synonym: VSAL_I0543

Alternate gene names: 209694136

Gene position: 597709-596942 (Counterclockwise)

Preceding gene: 209694139

Following gene: 209694135

Centisome position: 17.98

GC content: 38.8

Gene sequence:

>768_bases
ATGACTAGTATTAAGCAAAATATCCACCAAATCACTCTTCAGATAGAGAATAGCATTCAAAAATGTGGTCGATCCCCCGA
TTCAGTGCAACTACTGGCGGTAAGTAAAACCAAACCTATCGAGTTACTCGAACAAGCAATCGAATCGGGTCAACACTCTT
TTGGTGAAAACTACGTTCAAGAAGGTGTTGATAAAGTCCACTATTTTCAAAAAAATCATTCGAATATCGAATTAGAATGG
CATTTTATCGGACCAATTCAATCGAATAAGACTCGTCCAATTGCCGAACATTTTGATTGGGTGCATTCTATTGATCGTCT
TAAGATAGCTCAACGTTTAAATGAACAACGTCCCTCTGATTTAGGTGAACTAAACGTATTAATTCAGGTCAATATTAGCT
CAGAAGATAGTAAGTCAGGCACCACGGCTAATGAGGTAATGTCACTGGCCGCGGCTATTCATGCAATGCCAAACCTAACA
CTTCGAGGATTAATGTCTATCCCTGCAAATGTCTCTAATTACGAAGAGCAATTAGCCGCATTCAAACAACTTGCTTCCAT
TCAAAACCAATTAGAAGCACAATATCCACAGGTTGATACCTTATCGATGGGCATGAGCGGTGATATAGATGCCGCAATTG
AAGCGGGCTCTACGATGGTACGTATTGGTACTGCTATTTTTGGTGCAAGAAACTATACCAATGAAGTAATAATACACAGT
AAGCGACTCTTAAAAATAAAAAATAGGAATACGAATGGAACATCGTAA

Upstream 100 bases:

>100_bases
GGAGGAACTCCTGCAGATAGGTGTAGATCTGATGCGTTTTGTTTTACACTAAAGTCCAGTAGTTCTGTGATATCCATAAT
TTTCCTCGGTAATCGTTTCT

Downstream 100 bases:

>100_bases
CATTGCTTTTATTGGTGCGGGAAACATGACTCGTTCAATCATTGCAGGCTTAATTAGCAGTGGTTATCCAAAAAAAAATA
TCACCGCAACAAACCCAAGC

Product: membrane protein, related to K+ transport

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 255; Mature: 254

Protein sequence:

>255_residues
MTSIKQNIHQITLQIENSIQKCGRSPDSVQLLAVSKTKPIELLEQAIESGQHSFGENYVQEGVDKVHYFQKNHSNIELEW
HFIGPIQSNKTRPIAEHFDWVHSIDRLKIAQRLNEQRPSDLGELNVLIQVNISSEDSKSGTTANEVMSLAAAIHAMPNLT
LRGLMSIPANVSNYEEQLAAFKQLASIQNQLEAQYPQVDTLSMGMSGDIDAAIEAGSTMVRIGTAIFGARNYTNEVIIHS
KRLLKIKNRNTNGTS

Sequences:

>Translated_255_residues
MTSIKQNIHQITLQIENSIQKCGRSPDSVQLLAVSKTKPIELLEQAIESGQHSFGENYVQEGVDKVHYFQKNHSNIELEW
HFIGPIQSNKTRPIAEHFDWVHSIDRLKIAQRLNEQRPSDLGELNVLIQVNISSEDSKSGTTANEVMSLAAAIHAMPNLT
LRGLMSIPANVSNYEEQLAAFKQLASIQNQLEAQYPQVDTLSMGMSGDIDAAIEAGSTMVRIGTAIFGARNYTNEVIIHS
KRLLKIKNRNTNGTS
>Mature_254_residues
TSIKQNIHQITLQIENSIQKCGRSPDSVQLLAVSKTKPIELLEQAIESGQHSFGENYVQEGVDKVHYFQKNHSNIELEWH
FIGPIQSNKTRPIAEHFDWVHSIDRLKIAQRLNEQRPSDLGELNVLIQVNISSEDSKSGTTANEVMSLAAAIHAMPNLTL
RGLMSIPANVSNYEEQLAAFKQLASIQNQLEAQYPQVDTLSMGMSGDIDAAIEAGSTMVRIGTAIFGARNYTNEVIIHSK
RLLKIKNRNTNGTS

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=221, Percent_Identity=37.5565610859729, Blast_Score=124, Evalue=8e-29,
Organism=Escherichia coli, GI1789321, Length=235, Percent_Identity=57.4468085106383, Blast_Score=285, Evalue=2e-78,
Organism=Caenorhabditis elegans, GI17533025, Length=217, Percent_Identity=36.8663594470046, Blast_Score=110, Evalue=6e-25,
Organism=Saccharomyces cerevisiae, GI6319435, Length=221, Percent_Identity=36.6515837104072, Blast_Score=114, Evalue=1e-26,
Organism=Drosophila melanogaster, GI45550861, Length=211, Percent_Identity=38.3886255924171, Blast_Score=125, Evalue=2e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 28360; Mature: 28229

Theoretical pI: Translated: 6.61; Mature: 6.61

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSIKQNIHQITLQIENSIQKCGRSPDSVQLLAVSKTKPIELLEQAIESGQHSFGENYVQ
CCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHCCHHHHHHHHH
EGVDKVHYFQKNHSNIELEWHFIGPIQSNKTRPIAEHFDWVHSIDRLKIAQRLNEQRPSD
HHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
LGELNVLIQVNISSEDSKSGTTANEVMSLAAAIHAMPNLTLRGLMSIPANVSNYEEQLAA
CCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHH
FKQLASIQNQLEAQYPQVDTLSMGMSGDIDAAIEAGSTMVRIGTAIFGARNYTNEVIIHS
HHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHCCCHHEEHHHHHHCCCCCCCCEEEEH
KRLLKIKNRNTNGTS
HHEEEEECCCCCCCC
>Mature Secondary Structure 
TSIKQNIHQITLQIENSIQKCGRSPDSVQLLAVSKTKPIELLEQAIESGQHSFGENYVQ
CHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHCCHHHHHHHHH
EGVDKVHYFQKNHSNIELEWHFIGPIQSNKTRPIAEHFDWVHSIDRLKIAQRLNEQRPSD
HHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
LGELNVLIQVNISSEDSKSGTTANEVMSLAAAIHAMPNLTLRGLMSIPANVSNYEEQLAA
CCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHH
FKQLASIQNQLEAQYPQVDTLSMGMSGDIDAAIEAGSTMVRIGTAIFGARNYTNEVIIHS
HHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHCCCHHEEHHHHHHCCCCCCCCEEEEH
KRLLKIKNRNTNGTS
HHEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8982386 [H]