Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
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Accession | NC_011312 |
Length | 3,325,165 |
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The map label for this gene is 209694048
Identifier: 209694048
GI number: 209694048
Start: 504688
End: 505092
Strand: Reverse
Name: 209694048
Synonym: VSAL_I0449
Alternate gene names: NA
Gene position: 505092-504688 (Counterclockwise)
Preceding gene: 209694049
Following gene: 209694047
Centisome position: 15.19
GC content: 33.09
Gene sequence:
>405_bases ATGGATAAAAAACAACAGAGACTCATCGCTAATTTTTATTCAGCATTAGATGGAAATATTTCAAATGAGCTGTCTTTTGA ACAAAAAAAATCCATCGAACGAGCCGTAATTGCAACGGGTCTTGGTTCAAATAATAATATCGATATTCGAAAAAGTGTCT CATTTTTTAATAAACGTTATTTTTTCGTTTTTTTACTCGGTAGAGATTATAGAAATAAGATGAGAAGCGAGTCACCACTT GCATTATTCTTCATGACACTATTAACGTGCTTCGGTGTGGTTGCTCTTTTCGGACTCGCGGTGGTTATTCTTTATCTTAT AAAATCAGCGCTCGGTATCGATATATTTCATAATTTTTCATTTGGGATTTGGGATTGGTTTAAAGAAGTCATGCATATTT CATAA
Upstream 100 bases:
>100_bases GTTAATTATAGTCAGTATTTAGCGCATTATGATTGGCATAAAATTGCAGGTAAAACGATGGCCATCTATGACACTATTGA GAAAAAGAGAACTCAACATG
Downstream 100 bases:
>100_bases TTAACAATGATACTCCACCATGTTTCAACTTAAAGCGCTTCATTTACCCGTTATTAGTCGTTAAACTGATCATATAACGA TGATGCTCAATCAAGAGCGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 134; Mature: 134
Protein sequence:
>134_residues MDKKQQRLIANFYSALDGNISNELSFEQKKSIERAVIATGLGSNNNIDIRKSVSFFNKRYFFVFLLGRDYRNKMRSESPL ALFFMTLLTCFGVVALFGLAVVILYLIKSALGIDIFHNFSFGIWDWFKEVMHIS
Sequences:
>Translated_134_residues MDKKQQRLIANFYSALDGNISNELSFEQKKSIERAVIATGLGSNNNIDIRKSVSFFNKRYFFVFLLGRDYRNKMRSESPL ALFFMTLLTCFGVVALFGLAVVILYLIKSALGIDIFHNFSFGIWDWFKEVMHIS >Mature_134_residues MDKKQQRLIANFYSALDGNISNELSFEQKKSIERAVIATGLGSNNNIDIRKSVSFFNKRYFFVFLLGRDYRNKMRSESPL ALFFMTLLTCFGVVALFGLAVVILYLIKSALGIDIFHNFSFGIWDWFKEVMHIS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15466; Mature: 15466
Theoretical pI: Translated: 10.01; Mature: 10.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDKKQQRLIANFYSALDGNISNELSFEQKKSIERAVIATGLGSNNNIDIRKSVSFFNKRY CCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH FFVFLLGRDYRNKMRSESPLALFFMTLLTCFGVVALFGLAVVILYLIKSALGIDIFHNFS HEEEEECCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC FGIWDWFKEVMHIS HHHHHHHHHHHCCC >Mature Secondary Structure MDKKQQRLIANFYSALDGNISNELSFEQKKSIERAVIATGLGSNNNIDIRKSVSFFNKRY CCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH FFVFLLGRDYRNKMRSESPLALFFMTLLTCFGVVALFGLAVVILYLIKSALGIDIFHNFS HEEEEECCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC FGIWDWFKEVMHIS HHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA