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The map label for this gene is ytfM [H]

Identifier: 209694034

GI number: 209694034

Start: 467761

End: 469482

Strand: Direct

Name: ytfM [H]

Synonym: VSAL_I0433

Alternate gene names: 209694034

Gene position: 467761-469482 (Clockwise)

Preceding gene: 209694032

Following gene: 209694035

Centisome position: 14.07

GC content: 40.48

Gene sequence:

>1722_bases
ATGACCAAGAAGTTATCCCTCTTTTTTACATTTTGTTTGTTTGCCATTTCATCTAACGTGTCGGCAGAAACAGAATTGGA
TATAGAGGGTTTAGAAGGATCTTTACTGAGTAATGTAGAAGCTTACATCTCAGGTATTCCAGAAGAGGACTATTCCGTAT
CTCTTCGTTTCCAAGCTCGCCTTGAAGAAAGTACGACTGATGCCTTAAAAGCACTGGGTTATTACCAACCCGTGATCACC
TTCACTATTGAAGGTGAAAAATCAAAACACACACTTATTATGACGGTTGAGGAAGGCGAGCCCGTTGTTATTTACGTCAG
TGATATCGTTATTACGGGTGAAGCAAGGAACGATATTGACTTTACTAATGCGGTTGATAGTTCAGGTCTCAATTTAGGGC
AAGTTTTAAACCATGGTCGATACGAAAGTTTAAAAAGTACACTGCAAAATCTAGCGTTAAGAAAAGGGTATTTTGATGGT
GAATTTTCGGTTAGTCGTTTAGAGGTAGCTCCTGGAAGACATCAAGCAATGGTTCGCTTACGTTATGATAGTGGTAAGCG
TTATAGTTTTGGTGAAACGACGATCGATGGCAGTCAAGTTGAAGAAAAGCGAGTGCGTTCGATAATTCCTTTTGAGCCAG
GTGACCCTTATCTTGCTAGTCTGGTTGGTGATTTAAATCAATCCCTTTCAAATACTGAATGGTTTTCATCCGTTTATGTT
GAACCTGATTTAGATGCTGTTGGTGAAACTCATCAATTACCAATGAAAGTTCATGTCTCTCCTCAAGTTAGAAATCAATT
AGAAACCAGTATTGGTTATTCGACAGATGTCGGCGCGAGAGGGAAAATTCGATGGAAAAACCCGTGGTTAAATAAATATG
GTCACAGTTTAGATACTGCACTTTCTATCTCTAAGCCAGAACAAGAAGCGAGGATCTCTTATAAGATCCCTTTAGAGCAA
GTATTAAAAGATTATTACATTGTGAAATATGGTCTTAAAAATGTGGATAACCGAGATACTGACAGTTTGGAGTCGAATTT
AGCGTTTGAAAGGCACTGGGTTTATGACTCTGGTTGGCATCGCACTATTTATACTCGTTTCTTATATGAAGAATTTACGC
AAGGCATCCAAGATGGGACTGCTTGGCTAGTGCTTCCTGGTATCTCATTCTCTAAAAGTCGCACTCGTGGTGGAACAATG
CCGATGTGGGGGGATAAAAAAGCATTCACTATTGAAGGTACTGATGAAGCATTAACGTCAGACGTAAGAATGCTTCGCCT
ACAAGCCCAAGGAGCGATTGTTCGTAGTATTGGGGAAAACCATCGAGGTGTTGCACGAGCCGATATTGGTGCAATATATA
CCGATGATTTCTACAAATTACCCCCATCGATTCGATTCTTTGCTGGTGGTGATAATAGTATTCGTGGTTACGGATATGAA
GAAGTATCACCAAAAGACAGCAGTGGTTATTTAACTGGCGGACAATTTATGGCAACAACCAGTCTTGAGTATCAATATCG
AGTTGTGGGTAATTGGTGGTTGGCGACATTTATTGATTATGGTGATGCTTGGATAACAACTCCAGATTGGAAAACGGGTG
CAGGTTTAGGTATTCGATGGGCTTCTCCTGTAGGGCCAGTTCGACTTGATTTTGCGTGGGGGTTTGATGCTGAACCTGGT
GATGAATTTAAAATCCATTTTACGTTAGGACCTGAAGTATGA

Upstream 100 bases:

>100_bases
ACTGAGTAATTTAGAAGACATTTGCCTTGTGCTACTCTATAAAACGAGTAAATTACCATGACATATAATGCATAACTGAA
TCAATAGAATAATTATAAGT

Downstream 100 bases:

>100_bases
GTTCCTTATCGGTAAATGAAGAACAAAATAAGCCGCAATTAAAGAAAAAGCGTCGTTTTAGTCGATACTGTATTTGCTTG
GCTTTGTTTGTTCCAACAAT

Product: surface antigen protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 573; Mature: 572

Protein sequence:

>573_residues
MTKKLSLFFTFCLFAISSNVSAETELDIEGLEGSLLSNVEAYISGIPEEDYSVSLRFQARLEESTTDALKALGYYQPVIT
FTIEGEKSKHTLIMTVEEGEPVVIYVSDIVITGEARNDIDFTNAVDSSGLNLGQVLNHGRYESLKSTLQNLALRKGYFDG
EFSVSRLEVAPGRHQAMVRLRYDSGKRYSFGETTIDGSQVEEKRVRSIIPFEPGDPYLASLVGDLNQSLSNTEWFSSVYV
EPDLDAVGETHQLPMKVHVSPQVRNQLETSIGYSTDVGARGKIRWKNPWLNKYGHSLDTALSISKPEQEARISYKIPLEQ
VLKDYYIVKYGLKNVDNRDTDSLESNLAFERHWVYDSGWHRTIYTRFLYEEFTQGIQDGTAWLVLPGISFSKSRTRGGTM
PMWGDKKAFTIEGTDEALTSDVRMLRLQAQGAIVRSIGENHRGVARADIGAIYTDDFYKLPPSIRFFAGGDNSIRGYGYE
EVSPKDSSGYLTGGQFMATTSLEYQYRVVGNWWLATFIDYGDAWITTPDWKTGAGLGIRWASPVGPVRLDFAWGFDAEPG
DEFKIHFTLGPEV

Sequences:

>Translated_573_residues
MTKKLSLFFTFCLFAISSNVSAETELDIEGLEGSLLSNVEAYISGIPEEDYSVSLRFQARLEESTTDALKALGYYQPVIT
FTIEGEKSKHTLIMTVEEGEPVVIYVSDIVITGEARNDIDFTNAVDSSGLNLGQVLNHGRYESLKSTLQNLALRKGYFDG
EFSVSRLEVAPGRHQAMVRLRYDSGKRYSFGETTIDGSQVEEKRVRSIIPFEPGDPYLASLVGDLNQSLSNTEWFSSVYV
EPDLDAVGETHQLPMKVHVSPQVRNQLETSIGYSTDVGARGKIRWKNPWLNKYGHSLDTALSISKPEQEARISYKIPLEQ
VLKDYYIVKYGLKNVDNRDTDSLESNLAFERHWVYDSGWHRTIYTRFLYEEFTQGIQDGTAWLVLPGISFSKSRTRGGTM
PMWGDKKAFTIEGTDEALTSDVRMLRLQAQGAIVRSIGENHRGVARADIGAIYTDDFYKLPPSIRFFAGGDNSIRGYGYE
EVSPKDSSGYLTGGQFMATTSLEYQYRVVGNWWLATFIDYGDAWITTPDWKTGAGLGIRWASPVGPVRLDFAWGFDAEPG
DEFKIHFTLGPEV
>Mature_572_residues
TKKLSLFFTFCLFAISSNVSAETELDIEGLEGSLLSNVEAYISGIPEEDYSVSLRFQARLEESTTDALKALGYYQPVITF
TIEGEKSKHTLIMTVEEGEPVVIYVSDIVITGEARNDIDFTNAVDSSGLNLGQVLNHGRYESLKSTLQNLALRKGYFDGE
FSVSRLEVAPGRHQAMVRLRYDSGKRYSFGETTIDGSQVEEKRVRSIIPFEPGDPYLASLVGDLNQSLSNTEWFSSVYVE
PDLDAVGETHQLPMKVHVSPQVRNQLETSIGYSTDVGARGKIRWKNPWLNKYGHSLDTALSISKPEQEARISYKIPLEQV
LKDYYIVKYGLKNVDNRDTDSLESNLAFERHWVYDSGWHRTIYTRFLYEEFTQGIQDGTAWLVLPGISFSKSRTRGGTMP
MWGDKKAFTIEGTDEALTSDVRMLRLQAQGAIVRSIGENHRGVARADIGAIYTDDFYKLPPSIRFFAGGDNSIRGYGYEE
VSPKDSSGYLTGGQFMATTSLEYQYRVVGNWWLATFIDYGDAWITTPDWKTGAGLGIRWASPVGPVRLDFAWGFDAEPGD
EFKIHFTLGPEV

Specific function: Unknown

COG id: COG0729

COG function: function code M; Outer membrane protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_0698 [H]

Homologues:

Organism=Escherichia coli, GI1790666, Length=576, Percent_Identity=44.2708333333333, Blast_Score=488, Evalue=1e-139,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000184
- InterPro:   IPR010827 [H]

Pfam domain/function: PF01103 Bac_surface_Ag; PF07244 Surf_Ag_VNR [H]

EC number: NA

Molecular weight: Translated: 64302; Mature: 64170

Theoretical pI: Translated: 4.79; Mature: 4.79

Prosite motif: PS00213 LIPOCALIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKKLSLFFTFCLFAISSNVSAETELDIEGLEGSLLSNVEAYISGIPEEDYSVSLRFQAR
CCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCEEEEEEEEE
LEESTTDALKALGYYQPVITFTIEGEKSKHTLIMTVEEGEPVVIYVSDIVITGEARNDID
CCHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEECCCEEEEEEEEEEEECCCCCCCC
FTNAVDSSGLNLGQVLNHGRYESLKSTLQNLALRKGYFDGEFSVSRLEVAPGRHQAMVRL
CCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCEEEEEE
RYDSGKRYSFGETTIDGSQVEEKRVRSIIPFEPGDPYLASLVGDLNQSLSNTEWFSSVYV
EECCCCEEECCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCHHEEEEE
EPDLDAVGETHQLPMKVHVSPQVRNQLETSIGYSTDVGARGKIRWKNPWLNKYGHSLDTA
CCCHHHCCCCCCCCEEEECCHHHHHHHHHHCCCCCCCCCCCEEEECCCCHHHHCCCHHHE
LSISKPEQEARISYKIPLEQVLKDYYIVKYGLKNVDNRDTDSLESNLAFERHWVYDSGWH
EECCCCCCCCEEEEECCHHHHHHHHEEEEECCCCCCCCCCHHHHHCCCEEEEEEECCCCC
RTIYTRFLYEEFTQGIQDGTAWLVLPGISFSKSRTRGGTMPMWGDKKAFTIEGTDEALTS
HHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHH
DVRMLRLQAQGAIVRSIGENHRGVARADIGAIYTDDFYKLPPSIRFFAGGDNSIRGYGYE
HHHEEEEHHCCHHHHHCCCCCCCEEEECCCEEEECCCEECCCCEEEEECCCCCCCCCCCC
EVSPKDSSGYLTGGQFMATTSLEYQYRVVGNWWLATFIDYGDAWITTPDWKTGAGLGIRW
CCCCCCCCCEEECCCEEEEEECEEEEEEEECEEEEEHHHCCCEEEECCCCCCCCCCEEEE
ASPVGPVRLDFAWGFDAEPGDEFKIHFTLGPEV
CCCCCCEEEEEEECCCCCCCCCEEEEEEECCCC
>Mature Secondary Structure 
TKKLSLFFTFCLFAISSNVSAETELDIEGLEGSLLSNVEAYISGIPEEDYSVSLRFQAR
CCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCEEEEEEEEE
LEESTTDALKALGYYQPVITFTIEGEKSKHTLIMTVEEGEPVVIYVSDIVITGEARNDID
CCHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEECCCEEEEEEEEEEEECCCCCCCC
FTNAVDSSGLNLGQVLNHGRYESLKSTLQNLALRKGYFDGEFSVSRLEVAPGRHQAMVRL
CCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCEEEEEE
RYDSGKRYSFGETTIDGSQVEEKRVRSIIPFEPGDPYLASLVGDLNQSLSNTEWFSSVYV
EECCCCEEECCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCHHEEEEE
EPDLDAVGETHQLPMKVHVSPQVRNQLETSIGYSTDVGARGKIRWKNPWLNKYGHSLDTA
CCCHHHCCCCCCCCEEEECCHHHHHHHHHHCCCCCCCCCCCEEEECCCCHHHHCCCHHHE
LSISKPEQEARISYKIPLEQVLKDYYIVKYGLKNVDNRDTDSLESNLAFERHWVYDSGWH
EECCCCCCCCEEEEECCHHHHHHHHEEEEECCCCCCCCCCHHHHHCCCEEEEEEECCCCC
RTIYTRFLYEEFTQGIQDGTAWLVLPGISFSKSRTRGGTMPMWGDKKAFTIEGTDEALTS
HHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHH
DVRMLRLQAQGAIVRSIGENHRGVARADIGAIYTDDFYKLPPSIRFFAGGDNSIRGYGYE
HHHEEEEHHCCHHHHHCCCCCCCEEEECCCEEEECCCEECCCCEEEEECCCCCCCCCCCC
EVSPKDSSGYLTGGQFMATTSLEYQYRVVGNWWLATFIDYGDAWITTPDWKTGAGLGIRW
CCCCCCCCCEEECCCEEEEEECEEEEEEEECEEEEEHHHCCCEEEECCCCCCCCCCEEEE
ASPVGPVRLDFAWGFDAEPGDEFKIHFTLGPEV
CCCCCCEEEEEEECCCCCCCCCEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]