Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
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Accession | NC_011312 |
Length | 3,325,165 |
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The map label for this gene is 209694029
Identifier: 209694029
GI number: 209694029
Start: 464942
End: 465583
Strand: Reverse
Name: 209694029
Synonym: VSAL_I0428
Alternate gene names: NA
Gene position: 465583-464942 (Counterclockwise)
Preceding gene: 209694030
Following gene: 209694028
Centisome position: 14.0
GC content: 41.12
Gene sequence:
>642_bases ATGCTTATCCGTAATAAAAAAATACTACTTAGCCTTGCCATTTCAAGTTCTTTATTTTCAATTTCTAATGCTTCGAATGC AAATACGCATGACCACGCGCACGATGGAGATCAACAACATGAAAGTGAACATCGCCATCACGATGCTCATGTTCATGGCG TAGTCGAAACAAACATCGCTCAAGATGGCGATCATCTGTTATTTGAAATCACGGCACCAGGCGCTGATGTTGTGGGCTTT GAGCACGCACCGAAAGATGACACACAAAAACGAATTCTATCTGAGGCCGTAAAAACACTAAATAATCCAAGTGTTATTTT TACATTACCAGCAGAAGCTAAATGTACTTTAGAAGAAGCCCATGTCTCTCATAATTTAACGCCACACGACCACGACCACG ACCACGACCACGACCACGACCACGACCAGCACGATGGTGAACACCACAAAGAACATAGCAAGCACGGAGAATTTAACGCT CAATATGAATATCATTGTGAAGCAATATCGAAGCTAGATAACATTGAAACTCAATGGTTCACTCATTTCACGCACACTCA AAAAATGACGATTCAATATTTAGGTGATGCGGGACAAAAAGCTGATACGTTAACTCCAAATTCTCCGATTATCACTCTAT AG
Upstream 100 bases:
>100_bases TTCATCTATCACCGTACATTCACGTGCGCCTCCTTTTTCTATTCTCTAACTCAATAAATACATTAATTCATTTATAACTC TTAGATAATAGGAAGCCATT
Downstream 100 bases:
>100_bases CTTAGGTATGGCGATGGTAACATCGCCATAATTACGATGAATATTATTGAATTATCCGATCTCACTTTTCATTGGCCTAA TCAAAAAGAGCTAACGATTA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 213; Mature: 213
Protein sequence:
>213_residues MLIRNKKILLSLAISSSLFSISNASNANTHDHAHDGDQQHESEHRHHDAHVHGVVETNIAQDGDHLLFEITAPGADVVGF EHAPKDDTQKRILSEAVKTLNNPSVIFTLPAEAKCTLEEAHVSHNLTPHDHDHDHDHDHDHDQHDGEHHKEHSKHGEFNA QYEYHCEAISKLDNIETQWFTHFTHTQKMTIQYLGDAGQKADTLTPNSPIITL
Sequences:
>Translated_213_residues MLIRNKKILLSLAISSSLFSISNASNANTHDHAHDGDQQHESEHRHHDAHVHGVVETNIAQDGDHLLFEITAPGADVVGF EHAPKDDTQKRILSEAVKTLNNPSVIFTLPAEAKCTLEEAHVSHNLTPHDHDHDHDHDHDHDQHDGEHHKEHSKHGEFNA QYEYHCEAISKLDNIETQWFTHFTHTQKMTIQYLGDAGQKADTLTPNSPIITL >Mature_213_residues MLIRNKKILLSLAISSSLFSISNASNANTHDHAHDGDQQHESEHRHHDAHVHGVVETNIAQDGDHLLFEITAPGADVVGF EHAPKDDTQKRILSEAVKTLNNPSVIFTLPAEAKCTLEEAHVSHNLTPHDHDHDHDHDHDHDQHDGEHHKEHSKHGEFNA QYEYHCEAISKLDNIETQWFTHFTHTQKMTIQYLGDAGQKADTLTPNSPIITL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23999; Mature: 23999
Theoretical pI: Translated: 6.05; Mature: 6.05
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLIRNKKILLSLAISSSLFSISNASNANTHDHAHDGDQQHESEHRHHDAHVHGVVETNIA CCCCCCEEEEEEEHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEECCCC QDGDHLLFEITAPGADVVGFEHAPKDDTQKRILSEAVKTLNNPSVIFTLPAEAKCTLEEA CCCCEEEEEEECCCCCEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCEEHHHHH HVSHNLTPHDHDHDHDHDHDHDQHDGEHHKEHSKHGEFNAQYEYHCEAISKLDNIETQWF HHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHH THFTHTQKMTIQYLGDAGQKADTLTPNSPIITL HHHHHCHHEEEEECCCCCCCCCCCCCCCCEEEC >Mature Secondary Structure MLIRNKKILLSLAISSSLFSISNASNANTHDHAHDGDQQHESEHRHHDAHVHGVVETNIA CCCCCCEEEEEEEHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEECCCC QDGDHLLFEITAPGADVVGFEHAPKDDTQKRILSEAVKTLNNPSVIFTLPAEAKCTLEEA CCCCEEEEEEECCCCCEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCEEHHHHH HVSHNLTPHDHDHDHDHDHDHDQHDGEHHKEHSKHGEFNAQYEYHCEAISKLDNIETQWF HHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHH THFTHTQKMTIQYLGDAGQKADTLTPNSPIITL HHHHHCHHEEEEECCCCCCCCCCCCCCCCEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA