Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
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Accession | NC_011312 |
Length | 3,325,165 |
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The map label for this gene is 209694025
Identifier: 209694025
GI number: 209694025
Start: 461248
End: 462144
Strand: Reverse
Name: 209694025
Synonym: VSAL_I0424
Alternate gene names: NA
Gene position: 462144-461248 (Counterclockwise)
Preceding gene: 209694026
Following gene: 209694020
Centisome position: 13.9
GC content: 37.79
Gene sequence:
>897_bases ATGGATAATAAAAAGAATGTCATCGTTAATGACGCCCAAAACAGCAAAGAAAAAGCGACACATAAAAAAGAACATTACGT AGTAAGCAGTGAACGACGCCTTAAAGAAATTGCGATTAAACAAGGGCTTGGTGCAAAGCTTCAAGCACCAAAACCAGAAG AAACTCTATTAAAACGGGCTCTTTATAGAGAGAAGTTACTACGAGAACAACAGCAAAATAATTTAGAGCAAATAATAAAA TACGCACATGGTTACTGTAGTGATGAAACCGCTGGAGATCCTGATCCTGATTGGCTTCATCGCTTCTTTGAAATGGCAAA AGACATCCATGACCCGTCAATGCAACGTCTATGGAGTCAAATTTTCAAACAAGAGGTTGTCTCTCCCGGAGCAACATCCA TGAAAGCATTGAAAGTATTAAAGGACATGACACAGCGTGAGGCTCAAACATTTCAACGAGCGGCCTCATTAGCGTGTAGC TTTGGACAAGACAACAGCAAAAAATTATTACTTGGTTATAAGTGCGCAGGTACTTTATTTACTTTCTACAAAACAGAAGG CCCGCAGTTAATACATCTAGGTAATTACAAATTACCTTATTCCAGTTTATTGCTGCTTATTGATCTCGGTTTACTGCTAG GAACGGAATTAGAATCTGGGGAAATTGAATTTGAACCCGCGCTACCTTTGCACTATCAAGGTAAACAATTAGCAATTAAA CCGATGCAAAAAGGATCAAGATTAATTTATTACCGCTTTAGTCCTACTGGCGCAGAGCTGTGTAAATTACTTGGTAATAA ACCTAATGACAGTTATTACGACAGTTTAACCGGTTTATTAAGCCAAAAATTCATGGTTGAAACTGATGTAAAAACATCAA TATCAACCATGGTATAG
Upstream 100 bases:
>100_bases TTTTCAAAAATTTCTCATTACTTTCCTTAGATTAAAGTTTTTATCTTTAGTTACCGATACTATATAAAACAGACAGTGTT AATCGACGTTAGGCGTACCC
Downstream 100 bases:
>100_bases CATCACAAACAGCAGGAAGAAAAACATCTCCTGCTGCTTGTGCTTATTGAATAATATTTTTTTCTTTTAATACCGCCAAG CATTGCTCCACTAGTTCATC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 298; Mature: 298
Protein sequence:
>298_residues MDNKKNVIVNDAQNSKEKATHKKEHYVVSSERRLKEIAIKQGLGAKLQAPKPEETLLKRALYREKLLREQQQNNLEQIIK YAHGYCSDETAGDPDPDWLHRFFEMAKDIHDPSMQRLWSQIFKQEVVSPGATSMKALKVLKDMTQREAQTFQRAASLACS FGQDNSKKLLLGYKCAGTLFTFYKTEGPQLIHLGNYKLPYSSLLLLIDLGLLLGTELESGEIEFEPALPLHYQGKQLAIK PMQKGSRLIYYRFSPTGAELCKLLGNKPNDSYYDSLTGLLSQKFMVETDVKTSISTMV
Sequences:
>Translated_298_residues MDNKKNVIVNDAQNSKEKATHKKEHYVVSSERRLKEIAIKQGLGAKLQAPKPEETLLKRALYREKLLREQQQNNLEQIIK YAHGYCSDETAGDPDPDWLHRFFEMAKDIHDPSMQRLWSQIFKQEVVSPGATSMKALKVLKDMTQREAQTFQRAASLACS FGQDNSKKLLLGYKCAGTLFTFYKTEGPQLIHLGNYKLPYSSLLLLIDLGLLLGTELESGEIEFEPALPLHYQGKQLAIK PMQKGSRLIYYRFSPTGAELCKLLGNKPNDSYYDSLTGLLSQKFMVETDVKTSISTMV >Mature_298_residues MDNKKNVIVNDAQNSKEKATHKKEHYVVSSERRLKEIAIKQGLGAKLQAPKPEETLLKRALYREKLLREQQQNNLEQIIK YAHGYCSDETAGDPDPDWLHRFFEMAKDIHDPSMQRLWSQIFKQEVVSPGATSMKALKVLKDMTQREAQTFQRAASLACS FGQDNSKKLLLGYKCAGTLFTFYKTEGPQLIHLGNYKLPYSSLLLLIDLGLLLGTELESGEIEFEPALPLHYQGKQLAIK PMQKGSRLIYYRFSPTGAELCKLLGNKPNDSYYDSLTGLLSQKFMVETDVKTSISTMV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33841; Mature: 33841
Theoretical pI: Translated: 9.15; Mature: 9.15
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDNKKNVIVNDAQNSKEKATHKKEHYVVSSERRLKEIAIKQGLGAKLQAPKPEETLLKRA CCCCCCEEEECCCCCHHHHHHHHHHEEECHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH LYREKLLREQQQNNLEQIIKYAHGYCSDETAGDPDPDWLHRFFEMAKDIHDPSMQRLWSQ HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH IFKQEVVSPGATSMKALKVLKDMTQREAQTFQRAASLACSFGQDNSKKLLLGYKCAGTLF HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEHHHHHE TFYKTEGPQLIHLGNYKLPYSSLLLLIDLGLLLGTELESGEIEFEPALPLHYQGKQLAIK EEEECCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCEECCCEEEEC PMQKGSRLIYYRFSPTGAELCKLLGNKPNDSYYDSLTGLLSQKFMVETDVKTSISTMV CCCCCCEEEEEEECCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHCC >Mature Secondary Structure MDNKKNVIVNDAQNSKEKATHKKEHYVVSSERRLKEIAIKQGLGAKLQAPKPEETLLKRA CCCCCCEEEECCCCCHHHHHHHHHHEEECHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH LYREKLLREQQQNNLEQIIKYAHGYCSDETAGDPDPDWLHRFFEMAKDIHDPSMQRLWSQ HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH IFKQEVVSPGATSMKALKVLKDMTQREAQTFQRAASLACSFGQDNSKKLLLGYKCAGTLF HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEHHHHHE TFYKTEGPQLIHLGNYKLPYSSLLLLIDLGLLLGTELESGEIEFEPALPLHYQGKQLAIK EEEECCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCEECCCEEEEC PMQKGSRLIYYRFSPTGAELCKLLGNKPNDSYYDSLTGLLSQKFMVETDVKTSISTMV CCCCCCEEEEEEECCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA