Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
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Accession | NC_011312 |
Length | 3,325,165 |
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The map label for this gene is 209694026
Identifier: 209694026
GI number: 209694026
Start: 462468
End: 462953
Strand: Reverse
Name: 209694026
Synonym: VSAL_I0425
Alternate gene names: NA
Gene position: 462953-462468 (Counterclockwise)
Preceding gene: 209694027
Following gene: 209694025
Centisome position: 13.92
GC content: 36.21
Gene sequence:
>486_bases ATGAAAAAGAAACTCTTACTTTGCTTATTATTACTTTTGCCCTTTAGTGCATTTAGTGATGAGGTATTGAAATTAGATTG GATTGATTTAGTTCCAGAGCAGGAAAGACATCAATTTGATGCGATAGGAATGCCTAAAGTAAATCATAATGGCGCGCAAA TGCAACAATCTCTTGTTGGTGGTGTTAGGCAAGAATTAAATGGCAGTATGGTAAAAATTCCAGGCTTTGTTATTCCATTA GAAGGGGATGATAAAATGATTACTGAATTTTTATTAGTGCCTTATTTTGGTGCCTGCATTCATGTGCCACCGCCGCCACC CAATCAAATTATTTATGTGAAATTTAAAAAAGGGGCGCCAATTCAACAACTGTGGGATGTCGTTTATATCGTAGGTACAT TAAAAACAGAAACGATAGACAGTGAACTCGCAGAAACAGGCTATCTTATTGATGGGGTTCGCTTAGAAGAATATGATGAT GAATAA
Upstream 100 bases:
>100_bases CGTCTTGTGCTCTGGTTTTATTATTGGTGTTATTCCAGCAATACAAGCGTATCGCCACTCATTAAGTGATGGTATGACAA TAAGACTTTAAGGATAAATA
Downstream 100 bases:
>100_bases CTAATATCAACTCATTAACCCTAGTTTATCTTGATGATTTATATAAACCCAGAGAGATAAACTAGCGCAACAGTATAGCT AACAATTAAAACTGCACTAA
Product: hypothetical protein
Products: NA
Alternate protein names: Transporter NiCoT Family; Conserved Secreted Protein
Number of amino acids: Translated: 161; Mature: 161
Protein sequence:
>161_residues MKKKLLLCLLLLLPFSAFSDEVLKLDWIDLVPEQERHQFDAIGMPKVNHNGAQMQQSLVGGVRQELNGSMVKIPGFVIPL EGDDKMITEFLLVPYFGACIHVPPPPPNQIIYVKFKKGAPIQQLWDVVYIVGTLKTETIDSELAETGYLIDGVRLEEYDD E
Sequences:
>Translated_161_residues MKKKLLLCLLLLLPFSAFSDEVLKLDWIDLVPEQERHQFDAIGMPKVNHNGAQMQQSLVGGVRQELNGSMVKIPGFVIPL EGDDKMITEFLLVPYFGACIHVPPPPPNQIIYVKFKKGAPIQQLWDVVYIVGTLKTETIDSELAETGYLIDGVRLEEYDD E >Mature_161_residues MKKKLLLCLLLLLPFSAFSDEVLKLDWIDLVPEQERHQFDAIGMPKVNHNGAQMQQSLVGGVRQELNGSMVKIPGFVIPL EGDDKMITEFLLVPYFGACIHVPPPPPNQIIYVKFKKGAPIQQLWDVVYIVGTLKTETIDSELAETGYLIDGVRLEEYDD E
Specific function: Unknown
COG id: COG3495
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18153; Mature: 18153
Theoretical pI: Translated: 4.47; Mature: 4.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKKLLLCLLLLLPFSAFSDEVLKLDWIDLVPEQERHQFDAIGMPKVNHNGAQMQQSLVG CCHHHHHHHHHHHCCCCCCCCEEEEEHHHCCCCCHHCCCCCCCCCCCCCCHHHHHHHHHH GVRQELNGSMVKIPGFVIPLEGDDKMITEFLLVPYFGACIHVPPPPPNQIIYVKFKKGAP HHHHHHCCCEEECCCEEEEECCCHHHHHHHHHHHHCCCEEECCCCCCCCEEEEEECCCCC IQQLWDVVYIVGTLKTETIDSELAETGYLIDGVRLEEYDDE HHHHHHHHHHHHHCCHHHHHHHHHHCCCEECCEEECCCCCC >Mature Secondary Structure MKKKLLLCLLLLLPFSAFSDEVLKLDWIDLVPEQERHQFDAIGMPKVNHNGAQMQQSLVG CCHHHHHHHHHHHCCCCCCCCEEEEEHHHCCCCCHHCCCCCCCCCCCCCCHHHHHHHHHH GVRQELNGSMVKIPGFVIPLEGDDKMITEFLLVPYFGACIHVPPPPPNQIIYVKFKKGAP HHHHHHCCCEEECCCEEEEECCCHHHHHHHHHHHHCCCEEECCCCCCCCEEEEEECCCCC IQQLWDVVYIVGTLKTETIDSELAETGYLIDGVRLEEYDDE HHHHHHHHHHHHHCCHHHHHHHHHHCCCEECCEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA