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The map label for this gene is ytfB [H]

Identifier: 209694008

GI number: 209694008

Start: 445092

End: 445754

Strand: Direct

Name: ytfB [H]

Synonym: VSAL_I0407

Alternate gene names: 209694008

Gene position: 445092-445754 (Clockwise)

Preceding gene: 209694005

Following gene: 209694019

Centisome position: 13.39

GC content: 37.71

Gene sequence:

>663_bases
ATGAATAAAAAAAAGAAACCGAACATAAAACGTCCTGACTTTAAGGTTCAGTTGGCTGTTGTACAAAAAAAATTAGAACC
AATAGCGGCTAGATTTTCTCCATTTTGGGATCGTTTACCTGCTTTTCATCAAAAAGCATTGATGGTTTTATTGCCTGTTA
CATTAGTTTTAGTTTTATTACCAAGTGGTAACCAAGAGGTTGATTCTGCAACGGTTGAAAGTATTTCGCCTACGATGATC
CCTGCGGATGAAATGCAGAGACAAACCGTGAGTTTAAATTTAGAAGGGTTGAGTGAACAAGAAGAGGCGATTCGTAATGC
GCCTTCCCCTTATGAGCTTGAACAAGAAAAATCGGCAGAAGAAATAACAGAAGTAAAAACGTCTCCACAAGAACGAAGCG
CTGAGAAATGGCACGATTATAAAATTAAAGAAGGCGATACGCTTTACCAAGTGTTTAGAAAAAATAATTTATCGCTGACT
GAATTAAATAAAGTATTGAAAGTTGAAGGGGCAGATAAGCCGTTGAGCAATGTTAAAAAAGGCCAACTGTTTCGTTTTAA
ACTCAATACTCGAGGGGATTTGGATATCATTCAAATCGAGCGAGAAGGCCAAGCGGTGATGTATTTTAGAATGTCTGATG
GCAATTTCGGCCGCAGTAAATAA

Upstream 100 bases:

>100_bases
AAGGATACAGAGATCTAAGCTTAAGGTAAACTTTTGTACTTCTTTGCACTCTGATATTAGAATAAAACGTGAGCTAACCA
GTTTCGCATGAGGCGATGTC

Downstream 100 bases:

>100_bases
TTCCGGCTGATTTATTTCCCTCTTAGGTTTTTGAGCCATGCTTTGGGCATTAGAGGGAAAATAATTAATCCAATCCCTAC
CAATGTTAAGCTGTCTGGCA

Product: opacity-associated protein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MNKKKKPNIKRPDFKVQLAVVQKKLEPIAARFSPFWDRLPAFHQKALMVLLPVTLVLVLLPSGNQEVDSATVESISPTMI
PADEMQRQTVSLNLEGLSEQEEAIRNAPSPYELEQEKSAEEITEVKTSPQERSAEKWHDYKIKEGDTLYQVFRKNNLSLT
ELNKVLKVEGADKPLSNVKKGQLFRFKLNTRGDLDIIQIEREGQAVMYFRMSDGNFGRSK

Sequences:

>Translated_220_residues
MNKKKKPNIKRPDFKVQLAVVQKKLEPIAARFSPFWDRLPAFHQKALMVLLPVTLVLVLLPSGNQEVDSATVESISPTMI
PADEMQRQTVSLNLEGLSEQEEAIRNAPSPYELEQEKSAEEITEVKTSPQERSAEKWHDYKIKEGDTLYQVFRKNNLSLT
ELNKVLKVEGADKPLSNVKKGQLFRFKLNTRGDLDIIQIEREGQAVMYFRMSDGNFGRSK
>Mature_220_residues
MNKKKKPNIKRPDFKVQLAVVQKKLEPIAARFSPFWDRLPAFHQKALMVLLPVTLVLVLLPSGNQEVDSATVESISPTMI
PADEMQRQTVSLNLEGLSEQEEAIRNAPSPYELEQEKSAEEITEVKTSPQERSAEKWHDYKIKEGDTLYQVFRKNNLSLT
ELNKVLKVEGADKPLSNVKKGQLFRFKLNTRGDLDIIQIEREGQAVMYFRMSDGNFGRSK

Specific function: Unknown

COG id: COG3061

COG function: function code M; Cell envelope opacity-associated protein A

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082389, Length=193, Percent_Identity=26.9430051813472, Blast_Score=81, Evalue=6e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013731
- InterPro:   IPR007340 [H]

Pfam domain/function: PF04225 OapA; PF08525 OapA_N [H]

EC number: NA

Molecular weight: Translated: 25143; Mature: 25143

Theoretical pI: Translated: 9.56; Mature: 9.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKKKKPNIKRPDFKVQLAVVQKKLEPIAARFSPFWDRLPAFHQKALMVLLPVTLVLVLL
CCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
PSGNQEVDSATVESISPTMIPADEMQRQTVSLNLEGLSEQEEAIRNAPSPYELEQEKSAE
CCCCCCHHHHHHHHCCCCCCCHHHHHCEEEEEEECCCCHHHHHHHCCCCCCCCHHHHHHH
EITEVKTSPQERSAEKWHDYKIKEGDTLYQVFRKNNLSLTELNKVLKVEGADKPLSNVKK
HHHHHHCCCHHHHHHHHCCEECCCCCHHHHHHHHCCCCHHHHHHHHEECCCCCCHHHCCC
GQLFRFKLNTRGDLDIIQIEREGQAVMYFRMSDGNFGRSK
CCEEEEEECCCCCEEEEEEECCCCEEEEEEECCCCCCCCC
>Mature Secondary Structure
MNKKKKPNIKRPDFKVQLAVVQKKLEPIAARFSPFWDRLPAFHQKALMVLLPVTLVLVLL
CCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
PSGNQEVDSATVESISPTMIPADEMQRQTVSLNLEGLSEQEEAIRNAPSPYELEQEKSAE
CCCCCCHHHHHHHHCCCCCCCHHHHHCEEEEEEECCCCHHHHHHHCCCCCCCCHHHHHHH
EITEVKTSPQERSAEKWHDYKIKEGDTLYQVFRKNNLSLTELNKVLKVEGADKPLSNVKK
HHHHHHCCCHHHHHHHHCCEECCCCCHHHHHHHHCCCCHHHHHHHHEECCCCCCHHHCCC
GQLFRFKLNTRGDLDIIQIEREGQAVMYFRMSDGNFGRSK
CCEEEEEECCCCCEEEEEEECCCCEEEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]