| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
Click here to switch to the map view.
The map label for this gene is 209694019
Identifier: 209694019
GI number: 209694019
Start: 453631
End: 454044
Strand: Direct
Name: 209694019
Synonym: VSAL_I0418
Alternate gene names: NA
Gene position: 453631-454044 (Clockwise)
Preceding gene: 209694008
Following gene: 209694021
Centisome position: 13.64
GC content: 33.33
Gene sequence:
>414_bases ATGAATAAAAGATTTTGGTTACACCTTGGCACGGCGATTGGGCTGTTTGGGTTTTTCTTTATTGCGGCTTTTGTTTTTCA TATTTATGAAGTTTTTTACTTCTTTTCATTTTTGGCTTACGGCGTTTTAATTTTTAATCTATTAAGTGCCATTGTCTATG CGGATCAATGGTTTCATTATGTTCTTTGCAGTGTGCTATTAATTATTTTAGGGACGTTTGCATCGATAGATGTCTTATCC GCAAGGGATGAATTACTAACAAATTGGATAGAGGCGGAGTGGTTAGGGTTAACGGTCAAAAACAGTGATGATTACATTCA AGTTATTTTAATTCTAATTAATATTTTTACGGGAAGCTTGGCTGCCAATACGCTATTTTATGGATTATGTAAAAAAAATA GCACCGTTAAATAA
Upstream 100 bases:
>100_bases TAGAGTGGCACTCTATTAAAAAAATGTAAATATATGTTTCTCATTTGTTTTAATTTGAGCTTATGATTAACAATAGGTTC CGTTTATATTTGGTTTATGT
Downstream 100 bases:
>100_bases CGATGCTATCTTATGTAATCAGAGTAAATCAGTATTGAATTATTTACTTAGATTAATGTTATAAACGGCAAAACCAACAT CGTCTGTCGCGACTTGTTTC
Product: membrane protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 137; Mature: 137
Protein sequence:
>137_residues MNKRFWLHLGTAIGLFGFFFIAAFVFHIYEVFYFFSFLAYGVLIFNLLSAIVYADQWFHYVLCSVLLIILGTFASIDVLS ARDELLTNWIEAEWLGLTVKNSDDYIQVILILINIFTGSLAANTLFYGLCKKNSTVK
Sequences:
>Translated_137_residues MNKRFWLHLGTAIGLFGFFFIAAFVFHIYEVFYFFSFLAYGVLIFNLLSAIVYADQWFHYVLCSVLLIILGTFASIDVLS ARDELLTNWIEAEWLGLTVKNSDDYIQVILILINIFTGSLAANTLFYGLCKKNSTVK >Mature_137_residues MNKRFWLHLGTAIGLFGFFFIAAFVFHIYEVFYFFSFLAYGVLIFNLLSAIVYADQWFHYVLCSVLLIILGTFASIDVLS ARDELLTNWIEAEWLGLTVKNSDDYIQVILILINIFTGSLAANTLFYGLCKKNSTVK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15704; Mature: 15704
Theoretical pI: Translated: 6.22; Mature: 6.22
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKRFWLHLGTAIGLFGFFFIAAFVFHIYEVFYFFSFLAYGVLIFNLLSAIVYADQWFHY CCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VLCSVLLIILGTFASIDVLSARDELLTNWIEAEWLGLTVKNSDDYIQVILILINIFTGSL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHH AANTLFYGLCKKNSTVK HHHHHHHHHHCCCCCCC >Mature Secondary Structure MNKRFWLHLGTAIGLFGFFFIAAFVFHIYEVFYFFSFLAYGVLIFNLLSAIVYADQWFHY CCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VLCSVLLIILGTFASIDVLSARDELLTNWIEAEWLGLTVKNSDDYIQVILILINIFTGSL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHH AANTLFYGLCKKNSTVK HHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA