Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
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Accession | NC_011312 |
Length | 3,325,165 |
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The map label for this gene is 209694006
Identifier: 209694006
GI number: 209694006
Start: 443742
End: 444215
Strand: Reverse
Name: 209694006
Synonym: VSAL_I0405
Alternate gene names: NA
Gene position: 444215-443742 (Counterclockwise)
Preceding gene: 209694007
Following gene: 209693999
Centisome position: 13.36
GC content: 41.77
Gene sequence:
>474_bases ATGACAATGAAAAAAACTCTTATTTTATCGACTTTAGCGATTGCTCTTACTGCTGCTGCACCGGCTAATGCCTTCTTATC TAGCTTATTTGGTGGTGGAGATGATGAAGCAAAAACAGAACAAGCAGCCGCTTCAAACCCTCTTGTTGGTATGTTGACAG ATAACTTAGGTATTTCTGCCGATCAAGCAGCTGGTGGTGCAGGTGCATTATTAGCAATGGCAGGTAATGGGTTATCAAGC TCTGAAAGCTCTGAACTAAATAGTATGGTTCCTGGCCTTGAGTCTCTAACTGGTGCTATCCCTGGTGGACTAGGCGGTAT GATTTCAAACATGGACAGTGTTAAAACTGCATTTTCTGCTCTAGGTTTAGATCCGGCTCTTATTTCAAAATTCACCCCAT TAATTACTCAATACCTAACATCACAAGACGCAAGCTCAGGCCTGCTTGATTCTCTGACTTCATTATGGAAATAA
Upstream 100 bases:
>100_bases TTAAAAATAAAATAAGAAAGCGATGCCTATGGGCATCGCTTTTTTTTATGTCATACTCTAACGGTATGTTACGAAAATAA AACCATAATGTTAAAAGGAA
Downstream 100 bases:
>100_bases TTTCTTTTTAAGAGAAATAAAAAAAGACAGTGAATAATCGCTGTCTTTTTATTTTTATCGACGATAGAAAGAAAAATTAA ATTCCAGAGCCTTCCGCTTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 157; Mature: 156
Protein sequence:
>157_residues MTMKKTLILSTLAIALTAAAPANAFLSSLFGGGDDEAKTEQAAASNPLVGMLTDNLGISADQAAGGAGALLAMAGNGLSS SESSELNSMVPGLESLTGAIPGGLGGMISNMDSVKTAFSALGLDPALISKFTPLITQYLTSQDASSGLLDSLTSLWK
Sequences:
>Translated_157_residues MTMKKTLILSTLAIALTAAAPANAFLSSLFGGGDDEAKTEQAAASNPLVGMLTDNLGISADQAAGGAGALLAMAGNGLSS SESSELNSMVPGLESLTGAIPGGLGGMISNMDSVKTAFSALGLDPALISKFTPLITQYLTSQDASSGLLDSLTSLWK >Mature_156_residues TMKKTLILSTLAIALTAAAPANAFLSSLFGGGDDEAKTEQAAASNPLVGMLTDNLGISADQAAGGAGALLAMAGNGLSSS ESSELNSMVPGLESLTGAIPGGLGGMISNMDSVKTAFSALGLDPALISKFTPLITQYLTSQDASSGLLDSLTSLWK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15612; Mature: 15481
Theoretical pI: Translated: 3.95; Mature: 3.95
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTMKKTLILSTLAIALTAAAPANAFLSSLFGGGDDEAKTEQAAASNPLVGMLTDNLGISA CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHCCCCEEEEEECCCCCCC DQAAGGAGALLAMAGNGLSSSESSELNSMVPGLESLTGAIPGGLGGMISNMDSVKTAFSA CCCCCCCHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHH LGLDPALISKFTPLITQYLTSQDASSGLLDSLTSLWK HCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC >Mature Secondary Structure TMKKTLILSTLAIALTAAAPANAFLSSLFGGGDDEAKTEQAAASNPLVGMLTDNLGISA CCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHCCCCEEEEEECCCCCCC DQAAGGAGALLAMAGNGLSSSESSELNSMVPGLESLTGAIPGGLGGMISNMDSVKTAFSA CCCCCCCHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHH LGLDPALISKFTPLITQYLTSQDASSGLLDSLTSLWK HCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA