Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
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Accession | NC_011312 |
Length | 3,325,165 |
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The map label for this gene is 209693868
Identifier: 209693868
GI number: 209693868
Start: 306147
End: 307148
Strand: Reverse
Name: 209693868
Synonym: VSAL_I0260
Alternate gene names: NA
Gene position: 307148-306147 (Counterclockwise)
Preceding gene: 209693869
Following gene: 209693851
Centisome position: 9.24
GC content: 35.03
Gene sequence:
>1002_bases ATGAATGTTTTTCTTGTGACATCCCCCTTTCAATATATTTGTGCAAATGAAGCAAGATGTCATTATGCGACTAATGATAA TATCCTCCTGCTTGTAAAACAAGATATGGAGCCCGCAATTAGCCAAATGACAAAGATTGTTAATGAAAATGATTGGACGC ATGTGATTAATATTGAGCGAAGCCAACGAACATTCTCAATGCCGAAGGCCATCAAAGCGGTCAATAAGATAAGAACGAAT AGCTCTATTAAGCACTTTTTTCATGGCGAATATAACGGATGGCGAACCAAATTTCTGTTACGTAACTTGAAACCTGATAC TGAAATTTATTTCGATGATGGTTCGTTAACTTTAGGGGAATATGAGCGCTTTATCAAAACAGAGCACACTTTCTATCGCC CACGATTTGTAAATGATCTGATAATAAAAATGCAGGGACTAAAGCCTATTGGTCGACTACCCATTTCTAAAAAGTTAGAG ATTTTCACAATTTTTGATATAAAGGATCCCACGGTGCCAGTTGTCAAAAATGATTTTTCTAACATGAGAGAAACATATAA TTTGAATGACGATCACCAGCGCGAACATTCTAATGAATACGCTCTCTTCTTAGGCCAAGGTAGCATTGATTGTCATGGGA CAATTAAGTCTTTCTACTTAGATGCAATTAAGCGTTTTGCTAAAACTACAGGAAAGAAAATCTTATATGCACCTCATCGT ACAGAAACTTCAGATATCCGCAAAGAAATTTTGAAGATTGAAAACTTGACGTATCACGATTCAACACTACCTATTGAATT AGAAATTGCAGAAAAGCAACTAAATATCAACAACATAGGCGGGATAGCATCTACAGCACTGTACACTTTAAAAATCATTT ACCCTCATATAAAAATATATTCTGCAAAACAGTCTAAAGAAGAATATCATACACAGGTAACTTATACTGACAATGAGCTG ATGCTTGAACTCTTAAAATCTATTGGCATTGAATTATTCTAA
Upstream 100 bases:
>100_bases GTTCAAAGTAATCAAGGTGCTTTAAATCGTACGATCGCTATCTCAAATATATAATCACGATTATCAGTAGTCATATCTAA ATTAAATAAGGTTAATTTTC
Downstream 100 bases:
>100_bases TCGAGTAGAAGGAGGCCTCTAACAATGAGTACTGTCCCTGCTCTTCGAACCATTTTATTGTAATCGTCTAATTTAAGTTC AGAACCATTAAAAAATATTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 333; Mature: 333
Protein sequence:
>333_residues MNVFLVTSPFQYICANEARCHYATNDNILLLVKQDMEPAISQMTKIVNENDWTHVINIERSQRTFSMPKAIKAVNKIRTN SSIKHFFHGEYNGWRTKFLLRNLKPDTEIYFDDGSLTLGEYERFIKTEHTFYRPRFVNDLIIKMQGLKPIGRLPISKKLE IFTIFDIKDPTVPVVKNDFSNMRETYNLNDDHQREHSNEYALFLGQGSIDCHGTIKSFYLDAIKRFAKTTGKKILYAPHR TETSDIRKEILKIENLTYHDSTLPIELEIAEKQLNINNIGGIASTALYTLKIIYPHIKIYSAKQSKEEYHTQVTYTDNEL MLELLKSIGIELF
Sequences:
>Translated_333_residues MNVFLVTSPFQYICANEARCHYATNDNILLLVKQDMEPAISQMTKIVNENDWTHVINIERSQRTFSMPKAIKAVNKIRTN SSIKHFFHGEYNGWRTKFLLRNLKPDTEIYFDDGSLTLGEYERFIKTEHTFYRPRFVNDLIIKMQGLKPIGRLPISKKLE IFTIFDIKDPTVPVVKNDFSNMRETYNLNDDHQREHSNEYALFLGQGSIDCHGTIKSFYLDAIKRFAKTTGKKILYAPHR TETSDIRKEILKIENLTYHDSTLPIELEIAEKQLNINNIGGIASTALYTLKIIYPHIKIYSAKQSKEEYHTQVTYTDNEL MLELLKSIGIELF >Mature_333_residues MNVFLVTSPFQYICANEARCHYATNDNILLLVKQDMEPAISQMTKIVNENDWTHVINIERSQRTFSMPKAIKAVNKIRTN SSIKHFFHGEYNGWRTKFLLRNLKPDTEIYFDDGSLTLGEYERFIKTEHTFYRPRFVNDLIIKMQGLKPIGRLPISKKLE IFTIFDIKDPTVPVVKNDFSNMRETYNLNDDHQREHSNEYALFLGQGSIDCHGTIKSFYLDAIKRFAKTTGKKILYAPHR TETSDIRKEILKIENLTYHDSTLPIELEIAEKQLNINNIGGIASTALYTLKIIYPHIKIYSAKQSKEEYHTQVTYTDNEL MLELLKSIGIELF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38813; Mature: 38813
Theoretical pI: Translated: 8.40; Mature: 8.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNVFLVTSPFQYICANEARCHYATNDNILLLVKQDMEPAISQMTKIVNENDWTHVINIER CEEEEEECCHHHEECCCCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCEEEEEEEC SQRTFSMPKAIKAVNKIRTNSSIKHFFHGEYNGWRTKFLLRNLKPDTEIYFDDGSLTLGE CCCHHCCHHHHHHHHHHHCCCCHHEEECCCCCCHHHHHHHHCCCCCCEEEECCCCEEHHH YERFIKTEHTFYRPRFVNDLIIKMQGLKPIGRLPISKKLEIFTIFDIKDPTVPVVKNDFS HHHHHHCCCCEECCHHHHHHHHEECCCCCCCCCCCCCCEEEEEEEECCCCCCCHHHCCHH NMRETYNLNDDHQREHSNEYALFLGQGSIDCHGTIKSFYLDAIKRFAKTTGKKILYAPHR HHHHHCCCCCHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCC TETSDIRKEILKIENLTYHDSTLPIELEIAEKQLNINNIGGIASTALYTLKIIYPHIKIY CCHHHHHHHHHHHCCCEEECCCCEEEEEEECCCCCCCCCCCHHHHHHHEEEEEEEEEEEE SAKQSKEEYHTQVTYTDNELMLELLKSIGIELF ECHHCHHHHCEEEEEECHHHHHHHHHHCCCCCC >Mature Secondary Structure MNVFLVTSPFQYICANEARCHYATNDNILLLVKQDMEPAISQMTKIVNENDWTHVINIER CEEEEEECCHHHEECCCCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCEEEEEEEC SQRTFSMPKAIKAVNKIRTNSSIKHFFHGEYNGWRTKFLLRNLKPDTEIYFDDGSLTLGE CCCHHCCHHHHHHHHHHHCCCCHHEEECCCCCCHHHHHHHHCCCCCCEEEECCCCEEHHH YERFIKTEHTFYRPRFVNDLIIKMQGLKPIGRLPISKKLEIFTIFDIKDPTVPVVKNDFS HHHHHHCCCCEECCHHHHHHHHEECCCCCCCCCCCCCCEEEEEEEECCCCCCCHHHCCHH NMRETYNLNDDHQREHSNEYALFLGQGSIDCHGTIKSFYLDAIKRFAKTTGKKILYAPHR HHHHHCCCCCHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCC TETSDIRKEILKIENLTYHDSTLPIELEIAEKQLNINNIGGIASTALYTLKIIYPHIKIY CCHHHHHHHHHHHCCCEEECCCCEEEEEEECCCCCCCCCCCHHHHHHHEEEEEEEEEEEE SAKQSKEEYHTQVTYTDNELMLELLKSIGIELF ECHHCHHHHCEEEEEECHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA