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The map label for this gene is radC [C]

Identifier: 209693807

GI number: 209693807

Start: 231926

End: 232600

Strand: Reverse

Name: radC [C]

Synonym: VSAL_I0192

Alternate gene names: 209693807

Gene position: 232600-231926 (Counterclockwise)

Preceding gene: 209693813

Following gene: 209693806

Centisome position: 7.0

GC content: 42.96

Gene sequence:

>675_bases
ATGTCTTTAATGAATCTGCCAGAGGAATCCCGTCCAAGAGAGAAATTACTCGCCCTAGGGCCAAAGTCATTAACCGATGC
TGAGCTGTTAGCCATTTTCCTTCGCACTGGTATTAAGGGAATGAATGCGATTGAGTTGGCCGATAAGCTACTAAAAGAGT
TTGGCTCTCTAAGAAAATTATTGGGTTCGAATGAAAATGAATTTTGCAGCCACAAAGGATTAGGCACGGCAAAATTTGCC
CAGTTGCAGGCCGTTGTTGAAATGACAGAGCGATATTTATTTGAAAAGATAGAAAAGGAAGATGCGCTCACCAGTCCGGA
ACACACCAAGCGTTATCTTACGCGAATATTAAGGGACCGACATCGAGAAGCGTTCTATGTTCTCTTTCTTGATAACCAAC
ATCGAGTACTAAAAGGGGAGGTGTTATTTGAAGGTACAATTGATGCCGCTGCGGTCTATCCAAGAGAAGTTGTAAAAAGA
TCGATAGATTATAATGCAGCCGCCATCATTTTAGCGCATAATCACCCATCTGGTGTCGCAGAGCCAAGTCAAGCTGACAG
AAGGATAACAAAACGTATCTCAGATGCAGTTGAATTGGTGGATATCCGAGTCCTCGATCATTTCGTGATTGGCGATGGAG
AAATAGTCTCTTTTGCCGAAAGAGGATGGATTTGA

Upstream 100 bases:

>100_bases
AATCAAGCTTTGAAGCAGGCCGAAGGCTAGGGAGAGAGAAGGGTAAGGCCAGGGGATTAATTGTAACCTGTATGAATATT
AATCATTACATGAGTCGTTT

Downstream 100 bases:

>100_bases
GTGTTTTTTTTAGCAATTGAATAAAAAAAACACAAAAAACAGTATAAATGACCCTATTGGGTCTTGAGCAATGCGCATTC
AGTTAGTATAATGCGCGACC

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 223

Protein sequence:

>224_residues
MSLMNLPEESRPREKLLALGPKSLTDAELLAIFLRTGIKGMNAIELADKLLKEFGSLRKLLGSNENEFCSHKGLGTAKFA
QLQAVVEMTERYLFEKIEKEDALTSPEHTKRYLTRILRDRHREAFYVLFLDNQHRVLKGEVLFEGTIDAAAVYPREVVKR
SIDYNAAAIILAHNHPSGVAEPSQADRRITKRISDAVELVDIRVLDHFVIGDGEIVSFAERGWI

Sequences:

>Translated_224_residues
MSLMNLPEESRPREKLLALGPKSLTDAELLAIFLRTGIKGMNAIELADKLLKEFGSLRKLLGSNENEFCSHKGLGTAKFA
QLQAVVEMTERYLFEKIEKEDALTSPEHTKRYLTRILRDRHREAFYVLFLDNQHRVLKGEVLFEGTIDAAAVYPREVVKR
SIDYNAAAIILAHNHPSGVAEPSQADRRITKRISDAVELVDIRVLDHFVIGDGEIVSFAERGWI
>Mature_223_residues
SLMNLPEESRPREKLLALGPKSLTDAELLAIFLRTGIKGMNAIELADKLLKEFGSLRKLLGSNENEFCSHKGLGTAKFAQ
LQAVVEMTERYLFEKIEKEDALTSPEHTKRYLTRILRDRHREAFYVLFLDNQHRVLKGEVLFEGTIDAAAVYPREVVKRS
IDYNAAAIILAHNHPSGVAEPSQADRRITKRISDAVELVDIRVLDHFVIGDGEIVSFAERGWI

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI87082300, Length=213, Percent_Identity=52.112676056338, Blast_Score=231, Evalue=2e-62,
Organism=Escherichia coli, GI1788312, Length=143, Percent_Identity=45.4545454545455, Blast_Score=130, Evalue=7e-32,
Organism=Escherichia coli, GI2367100, Length=123, Percent_Identity=50.4065040650407, Blast_Score=129, Evalue=1e-31,
Organism=Escherichia coli, GI1788997, Length=123, Percent_Identity=48.780487804878, Blast_Score=128, Evalue=3e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 25342; Mature: 25210

Theoretical pI: Translated: 6.90; Mature: 6.90

Prosite motif: PS01302 RADC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLMNLPEESRPREKLLALGPKSLTDAELLAIFLRTGIKGMNAIELADKLLKEFGSLRKL
CCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
LGSNENEFCSHKGLGTAKFAQLQAVVEMTERYLFEKIEKEDALTSPEHTKRYLTRILRDR
HCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC
HREAFYVLFLDNQHRVLKGEVLFEGTIDAAAVYPREVVKRSIDYNAAAIILAHNHPSGVA
CCCEEEEEEECCCCEEEEEEEEEECCCCHHHHCHHHHHHHHCCCCCEEEEEEECCCCCCC
EPSQADRRITKRISDAVELVDIRVLDHFVIGDGEIVSFAERGWI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHCCCC
>Mature Secondary Structure 
SLMNLPEESRPREKLLALGPKSLTDAELLAIFLRTGIKGMNAIELADKLLKEFGSLRKL
CCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
LGSNENEFCSHKGLGTAKFAQLQAVVEMTERYLFEKIEKEDALTSPEHTKRYLTRILRDR
HCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC
HREAFYVLFLDNQHRVLKGEVLFEGTIDAAAVYPREVVKRSIDYNAAAIILAHNHPSGVA
CCCEEEEEEECCCCEEEEEEEEEECCCCHHHHCHHHHHHHHCCCCCEEEEEEECCCCCCC
EPSQADRRITKRISDAVELVDIRVLDHFVIGDGEIVSFAERGWI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA