Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is 209693813

Identifier: 209693813

GI number: 209693813

Start: 239187

End: 239666

Strand: Reverse

Name: 209693813

Synonym: VSAL_I0198

Alternate gene names: NA

Gene position: 239666-239187 (Counterclockwise)

Preceding gene: 209693814

Following gene: 209693807

Centisome position: 7.21

GC content: 42.08

Gene sequence:

>480_bases
ATGAACTTTTCAATTAACAGTGTTAACGTGCCGTTGATTGCACCCTCTGTTAATTTGCCAACAGAACAAGTAGCACGTGA
AAATCGCATTAAGAAGCCTGTTGTGCCAACGACAAAGATGAGTGAAACGACGTCTGAAAAAGCGATCAAAGGTGATGATA
AACAACATAAGCGTGATGCATGGGAACCGTCCGATCACCCCGGTTATGATGTGATGGAAGAGAAATCAAAATCAAAACCC
CACATAGGGACGTTATATGACATTGATGATGATTTAGCAAAACTTGCTAGATTGTTATCACTCGATACCTATGCGCAAGG
TGAGGGCACGGGTTACACCATGCGCTTTAATTTACCTAAAGAGTTATTAGAAAAACTGGCAGAGATGGGCAGGATGGTAC
GCCGTCGAAGTGTGATCAGTTTTCATTATGATAAAGCGGTAGTTCCAAATAATCCGTCGGATATATTGGCGGTGCTTTGA

Upstream 100 bases:

>100_bases
CACAGTGATGAATTTATCACTGAGTTACATCGTTTTTTGCAGCCGGAAGATGAGTTTTTAATTTAACTTTCTGCTCAGTG
TTACGATAAGGAAACGCTTT

Downstream 100 bases:

>100_bases
GGGACTAGAAAGAGCAGGGTTCAGATCGGTCGCAAGCTCCCTTGCAGATTTCAGAGGAGATCGCTGTGATTGCAGCATGC
GAGATTTGAAACTAGAGACT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 159; Mature: 159

Protein sequence:

>159_residues
MNFSINSVNVPLIAPSVNLPTEQVARENRIKKPVVPTTKMSETTSEKAIKGDDKQHKRDAWEPSDHPGYDVMEEKSKSKP
HIGTLYDIDDDLAKLARLLSLDTYAQGEGTGYTMRFNLPKELLEKLAEMGRMVRRRSVISFHYDKAVVPNNPSDILAVL

Sequences:

>Translated_159_residues
MNFSINSVNVPLIAPSVNLPTEQVARENRIKKPVVPTTKMSETTSEKAIKGDDKQHKRDAWEPSDHPGYDVMEEKSKSKP
HIGTLYDIDDDLAKLARLLSLDTYAQGEGTGYTMRFNLPKELLEKLAEMGRMVRRRSVISFHYDKAVVPNNPSDILAVL
>Mature_159_residues
MNFSINSVNVPLIAPSVNLPTEQVARENRIKKPVVPTTKMSETTSEKAIKGDDKQHKRDAWEPSDHPGYDVMEEKSKSKP
HIGTLYDIDDDLAKLARLLSLDTYAQGEGTGYTMRFNLPKELLEKLAEMGRMVRRRSVISFHYDKAVVPNNPSDILAVL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17909; Mature: 17909

Theoretical pI: Translated: 7.82; Mature: 7.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNFSINSVNVPLIAPSVNLPTEQVARENRIKKPVVPTTKMSETTSEKAIKGDDKQHKRDA
CCCCCCCCCCEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHCC
WEPSDHPGYDVMEEKSKSKPHIGTLYDIDDDLAKLARLLSLDTYAQGEGTGYTMRFNLPK
CCCCCCCCCCHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCHH
ELLEKLAEMGRMVRRRSVISFHYDKAVVPNNPSDILAVL
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEC
>Mature Secondary Structure
MNFSINSVNVPLIAPSVNLPTEQVARENRIKKPVVPTTKMSETTSEKAIKGDDKQHKRDA
CCCCCCCCCCEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHCC
WEPSDHPGYDVMEEKSKSKPHIGTLYDIDDDLAKLARLLSLDTYAQGEGTGYTMRFNLPK
CCCCCCCCCCHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCHH
ELLEKLAEMGRMVRRRSVISFHYDKAVVPNNPSDILAVL
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA