| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is yejM [H]
Identifier: 209693796
GI number: 209693796
Start: 221194
End: 223047
Strand: Reverse
Name: yejM [H]
Synonym: VSAL_I0181
Alternate gene names: 209693796
Gene position: 223047-221194 (Counterclockwise)
Preceding gene: 209693797
Following gene: 209693795
Centisome position: 6.71
GC content: 38.19
Gene sequence:
>1854_bases ATGATTTTGAATACATTGACATTTAAACAAAAACTTCACAGTCACGGTTGGTTTATTTTAATCAACAGTCTTATTGCGAT GGCCATTGCTACTCGTTATTTTGCCTTCTTGCCAGAGATCCCAACGGACATACTTGGTTTTAGTTTTATTACTTCAGGCA CCTTTAGCCAAATGGTATTACTAGTGGGATTAATCGGTCTGGTTGCTTTGCCTGCTCTAGCAATTCGTCCTGCAAAAATA CGTAATGGGTTGCAAGCATTAATCGCCTCTATTTGTATTGCGACGTTATTTATTGATATCTTAGTGTTTGCTCAATACCG ATTCCACATTAATGCCGTTGTTCTTGAATTGGTGCTTTCTGGTCAAGTAGTAAGCTTTCCACTCATTACATGGGTAACGG TTATTGGTGGAGTAATTGCTCTGGTTGTTGGTCAATACCTTTTGATCTCTTGGTTAGAAAAACCAGCCGCAATAACTCAG CACAAATTGGGTCGTAAATTTGCACTTATAACGTTCTTCGCATTATTAGCAACCCACGGAATTCATATTTGGGCTGCAGC GAACGCCTACCAACCCGTGACAACAGTAAAACGTTATTTACCTGCTTTTTACCCTGCAACATCAACAAGCATGATGAAAA AATATGGCTGGGTAAATGAAGAAGCCATTGCTCAACAAAAAGCGATGAAGCTAAATCGTAAAAGTGATTTAAATTATCCG CTTGCACCATTACAAAAAGAAGCGGTTGAAAAGCCAATTAATATTATGATTTTGACTGTTGATTCATGGCGCGCAGATAC CTTTAACGCAGAAAATACGCCAAACATGTGGGAATACGCGCAATCAGGCGTGATTTTTAATAATCACATCGCAACAGGTA ATGCGACACGTACGGGTATCTTTGGATTGTTCTATGGCATTCCAGGCACGTATTGGCACGGCTTCTTAGCTAACCAGAAA ACACCTGCGTTAATTGATCGCCTACAAGAACTCAATTATGACATGGGAATATTCACAGCAGCACAGCTAGAAAAGCCTGA ATTTAACCAGACTGTCTTTAAAAACATTCCAAATTTACGCATTAAATCAGAAGGTGGCTCGCCATCAGAACTAGATAAAG ATCTAACTAAAGATTGGCTAGAGTGGTACAGCAAGCGTGATACCTCTAAACCTGCATTCTCATTCTTATTCTATGATGCA CCGCATGGGTATGATTTCCCTAAAGATTATGCACATCGATATGAGCCAATGCTAGATGAGATTAATTATTTAGAATTGAG TAATGATAGCGATCCAACGCCTTTCTTTAATCGCTATAAAACGAGTGTACATTTTGTTGATAGTGTAGCAAAACAAGTAT TAGATAAACTAAAAGAAACGGGTGATTTAGAAAATACGTTAGTGATTATTACGGGTGACCACGGTCAAGAAATGAATGAT AACCGCATGAATTTCTGGGGTCATAATAGTAACTTTACAGACGCTCAGGTGAAGGTTCCGTTTGCTATATTTGGGCCAAA GATAAATGGTAAAGCGTTAGATTGGACGGCAGATGATTTAACTAGCCACCAAGATGTCGTTCCAACCTTGATGAAAAACT ACTTAGGTGTAACAAACAACATTAAAGATTACTCAGTAGGTGAAGATCTATTAGGCAAGCATGTTGATCGTAATTGGATC ATGACTTCAAACTACAGTGGTTATGCAATTATTGATAAAGAGTCGATTTTAGAAGTTGGTGCAACAGGACAATATCAATT GTTAGATAAGACTAACCGTCCAATGAAAGATGCTGAATTAAATTATCAACATCTTCAAGAAGCATTAGAGCAGATTAGTC GATTTAGTAAGTAG
Upstream 100 bases:
>100_bases ACAAAAGACAGATAAAATGGTCGGAAGATGAGTGGCAACACTTGTTTTCGGGCTACAACACAATTTAACCCATTTTTATT CACCCATTACAGCTGGATTC
Downstream 100 bases:
>100_bases ATTTTAGATTAAAGGATAAATATGAATATTTTAGTCACCGGCGGCGCAGGTTTTATTGGCTCAGCAGTTATTCGCCACAT TATCAGCAATACATCAAACT
Product: membrane associated sulfatase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 617; Mature: 617
Protein sequence:
>617_residues MILNTLTFKQKLHSHGWFILINSLIAMAIATRYFAFLPEIPTDILGFSFITSGTFSQMVLLVGLIGLVALPALAIRPAKI RNGLQALIASICIATLFIDILVFAQYRFHINAVVLELVLSGQVVSFPLITWVTVIGGVIALVVGQYLLISWLEKPAAITQ HKLGRKFALITFFALLATHGIHIWAAANAYQPVTTVKRYLPAFYPATSTSMMKKYGWVNEEAIAQQKAMKLNRKSDLNYP LAPLQKEAVEKPINIMILTVDSWRADTFNAENTPNMWEYAQSGVIFNNHIATGNATRTGIFGLFYGIPGTYWHGFLANQK TPALIDRLQELNYDMGIFTAAQLEKPEFNQTVFKNIPNLRIKSEGGSPSELDKDLTKDWLEWYSKRDTSKPAFSFLFYDA PHGYDFPKDYAHRYEPMLDEINYLELSNDSDPTPFFNRYKTSVHFVDSVAKQVLDKLKETGDLENTLVIITGDHGQEMND NRMNFWGHNSNFTDAQVKVPFAIFGPKINGKALDWTADDLTSHQDVVPTLMKNYLGVTNNIKDYSVGEDLLGKHVDRNWI MTSNYSGYAIIDKESILEVGATGQYQLLDKTNRPMKDAELNYQHLQEALEQISRFSK
Sequences:
>Translated_617_residues MILNTLTFKQKLHSHGWFILINSLIAMAIATRYFAFLPEIPTDILGFSFITSGTFSQMVLLVGLIGLVALPALAIRPAKI RNGLQALIASICIATLFIDILVFAQYRFHINAVVLELVLSGQVVSFPLITWVTVIGGVIALVVGQYLLISWLEKPAAITQ HKLGRKFALITFFALLATHGIHIWAAANAYQPVTTVKRYLPAFYPATSTSMMKKYGWVNEEAIAQQKAMKLNRKSDLNYP LAPLQKEAVEKPINIMILTVDSWRADTFNAENTPNMWEYAQSGVIFNNHIATGNATRTGIFGLFYGIPGTYWHGFLANQK TPALIDRLQELNYDMGIFTAAQLEKPEFNQTVFKNIPNLRIKSEGGSPSELDKDLTKDWLEWYSKRDTSKPAFSFLFYDA PHGYDFPKDYAHRYEPMLDEINYLELSNDSDPTPFFNRYKTSVHFVDSVAKQVLDKLKETGDLENTLVIITGDHGQEMND NRMNFWGHNSNFTDAQVKVPFAIFGPKINGKALDWTADDLTSHQDVVPTLMKNYLGVTNNIKDYSVGEDLLGKHVDRNWI MTSNYSGYAIIDKESILEVGATGQYQLLDKTNRPMKDAELNYQHLQEALEQISRFSK >Mature_617_residues MILNTLTFKQKLHSHGWFILINSLIAMAIATRYFAFLPEIPTDILGFSFITSGTFSQMVLLVGLIGLVALPALAIRPAKI RNGLQALIASICIATLFIDILVFAQYRFHINAVVLELVLSGQVVSFPLITWVTVIGGVIALVVGQYLLISWLEKPAAITQ HKLGRKFALITFFALLATHGIHIWAAANAYQPVTTVKRYLPAFYPATSTSMMKKYGWVNEEAIAQQKAMKLNRKSDLNYP LAPLQKEAVEKPINIMILTVDSWRADTFNAENTPNMWEYAQSGVIFNNHIATGNATRTGIFGLFYGIPGTYWHGFLANQK TPALIDRLQELNYDMGIFTAAQLEKPEFNQTVFKNIPNLRIKSEGGSPSELDKDLTKDWLEWYSKRDTSKPAFSFLFYDA PHGYDFPKDYAHRYEPMLDEINYLELSNDSDPTPFFNRYKTSVHFVDSVAKQVLDKLKETGDLENTLVIITGDHGQEMND NRMNFWGHNSNFTDAQVKVPFAIFGPKINGKALDWTADDLTSHQDVVPTLMKNYLGVTNNIKDYSVGEDLLGKHVDRNWI MTSNYSGYAIIDKESILEVGATGQYQLLDKTNRPMKDAELNYQHLQEALEQISRFSK
Specific function: Unknown
COG id: COG3083
COG function: function code R; Predicted hydrolase of alkaline phosphatase superfamily
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To H.influenzae HI_0842 [H]
Homologues:
Organism=Escherichia coli, GI1788515, Length=612, Percent_Identity=25.8169934640523, Blast_Score=218, Evalue=8e-58,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017849 - InterPro: IPR017850 - InterPro: IPR012159 - InterPro: IPR000917 [H]
Pfam domain/function: PF00884 Sulfatase [H]
EC number: NA
Molecular weight: Translated: 69686; Mature: 69686
Theoretical pI: Translated: 6.85; Mature: 6.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MILNTLTFKQKLHSHGWFILINSLIAMAIATRYFAFLPEIPTDILGFSFITSGTFSQMVL CCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHH LVGLIGLVALPALAIRPAKIRNGLQALIASICIATLFIDILVFAQYRFHINAVVLELVLS HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GQVVSFPLITWVTVIGGVIALVVGQYLLISWLEKPAAITQHKLGRKFALITFFALLATHG CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHCC IHIWAAANAYQPVTTVKRYLPAFYPATSTSMMKKYGWVNEEAIAQQKAMKLNRKSDLNYP EEEEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCC LAPLQKEAVEKPINIMILTVDSWRADTFNAENTPNMWEYAQSGVIFNNHIATGNATRTGI CCHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHCCEEEECEECCCCCCHHHH FGLFYGIPGTYWHGFLANQKTPALIDRLQELNYDMGIFTAAQLEKPEFNQTVFKNIPNLR HHHHHCCCHHHHHHHHCCCCCHHHHHHHHHCCCCCCEEEHHHCCCCCCCHHHHHCCCCCE IKSEGGSPSELDKDLTKDWLEWYSKRDTSKPAFSFLFYDAPHGYDFPKDYAHRYEPMLDE EECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCHHHHHHHCHHHHC INYLELSNDSDPTPFFNRYKTSVHFVDSVAKQVLDKLKETGDLENTLVIITGDHGQEMND CCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCC NRMNFWGHNSNFTDAQVKVPFAIFGPKINGKALDWTADDLTSHQDVVPTLMKNYLGVTNN CCCEECCCCCCCCCCEEEEEEEEECCCCCCCEECCCHHHHCCCHHHHHHHHHHHCCCCCC IKDYSVGEDLLGKHVDRNWIMTSNYSGYAIIDKESILEVGATGQYQLLDKTNRPMKDAEL CCCCCCCHHHHHHHCCCCEEEECCCCCEEEECHHHHHHHCCCCCEEECCCCCCCCCCCCC NYQHLQEALEQISRFSK CHHHHHHHHHHHHHCCC >Mature Secondary Structure MILNTLTFKQKLHSHGWFILINSLIAMAIATRYFAFLPEIPTDILGFSFITSGTFSQMVL CCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHH LVGLIGLVALPALAIRPAKIRNGLQALIASICIATLFIDILVFAQYRFHINAVVLELVLS HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GQVVSFPLITWVTVIGGVIALVVGQYLLISWLEKPAAITQHKLGRKFALITFFALLATHG CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHCC IHIWAAANAYQPVTTVKRYLPAFYPATSTSMMKKYGWVNEEAIAQQKAMKLNRKSDLNYP EEEEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCC LAPLQKEAVEKPINIMILTVDSWRADTFNAENTPNMWEYAQSGVIFNNHIATGNATRTGI CCHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHCCEEEECEECCCCCCHHHH FGLFYGIPGTYWHGFLANQKTPALIDRLQELNYDMGIFTAAQLEKPEFNQTVFKNIPNLR HHHHHCCCHHHHHHHHCCCCCHHHHHHHHHCCCCCCEEEHHHCCCCCCCHHHHHCCCCCE IKSEGGSPSELDKDLTKDWLEWYSKRDTSKPAFSFLFYDAPHGYDFPKDYAHRYEPMLDE EECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCHHHHHHHCHHHHC INYLELSNDSDPTPFFNRYKTSVHFVDSVAKQVLDKLKETGDLENTLVIITGDHGQEMND CCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCC NRMNFWGHNSNFTDAQVKVPFAIFGPKINGKALDWTADDLTSHQDVVPTLMKNYLGVTNN CCCEECCCCCCCCCCEEEEEEEEECCCCCCCEECCCHHHHCCCHHHHHHHHHHHCCCCCC IKDYSVGEDLLGKHVDRNWIMTSNYSGYAIIDKESILEVGATGQYQLLDKTNRPMKDAEL CCCCCCCHHHHHHHCCCCEEEECCCCCEEEECHHHHHHHCCCCCEEECCCCCCCCCCCCC NYQHLQEALEQISRFSK CHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11677608; 12644504 [H]