| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209693727
Identifier: 209693727
GI number: 209693727
Start: 140087
End: 140827
Strand: Reverse
Name: 209693727
Synonym: VSAL_I0104
Alternate gene names: NA
Gene position: 140827-140087 (Counterclockwise)
Preceding gene: 209693728
Following gene: 209693726
Centisome position: 4.24
GC content: 42.38
Gene sequence:
>741_bases ATGACTTTAAAAGCTAATTTCTACAAAAATCGTGTATGCCTGAATGTATTAGCAGGATCGGTTGATAATGCGGGGGAAAT TTATAACGCCGCAGAAGGCCATGTTTTGGTTGGTGTTTTATCTAAAAACTACCCAGATGTTGATACTGCCGTTACTGACA TGAAAAAATACAGCGAAGTAACCAACAATGCGGTCTCTGTCGGCTTAGGTGCAGGTGACCCAAATCAATCAATGATGGTT TCCCTTATTTCTCAGCATGTACAACCACAACACATCAACCAAGTATTTACGGGTGTCGCAACAAGCCGCGCATTAGTTGG ACAAGATAAAAGTATTGTTAACGGCTTAATTTCACCCACCGGTACGGTGGGAATGGTTAAAATCTCAACCGGGCCATTAA GCTCTCGCTCTGAAGATGCCATTGTTCCTGTAGAAACGGCAATTGCGATGCTAAAAGACATGGGCGGAAGCTCTGTTAAA TACTTCCCAATGGGTGGCCTAGAAAGTCGTGAAGAATTTGCGTATGTCGCTAAAGCCTGTGCAGAACAAGACTTTTGGTT GGAACCAACGGGTGGCATTGATCTAGAAAACTACGAAGAAATCATGCAAATCGCACTCGATGCGGGCGTAAGTAAAATCA TTCCTCACATCTATAGCTCTATTATTGATAAAGCGACAGGGAATTCACGCCCAACAGACGTAACAACCCTATTAGAAATG ACTAAAAAACTGCTTAACTAA
Upstream 100 bases:
>100_bases CAACGAAGGCATTATCGAAATTGATGTTCGCAGCGTTAACTCAACGCAACTGAATACTATTTTCCTAAAAATTAACGCAT TATTTTAAGAGAGACACTCC
Downstream 100 bases:
>100_bases GTTTGCTCCTCCAAGCCAGATCGCTGCCCCCAGAGATCTGGCTTTTTTATTTTACTCATACACAGACTTATTTTTAGTCG AAAAAAATAACTCAAGATAA
Product: hypothetical protein
Products: pyruvate; glyoxylate
Alternate protein names: None
Number of amino acids: Translated: 246; Mature: 245
Protein sequence:
>246_residues MTLKANFYKNRVCLNVLAGSVDNAGEIYNAAEGHVLVGVLSKNYPDVDTAVTDMKKYSEVTNNAVSVGLGAGDPNQSMMV SLISQHVQPQHINQVFTGVATSRALVGQDKSIVNGLISPTGTVGMVKISTGPLSSRSEDAIVPVETAIAMLKDMGGSSVK YFPMGGLESREEFAYVAKACAEQDFWLEPTGGIDLENYEEIMQIALDAGVSKIIPHIYSSIIDKATGNSRPTDVTTLLEM TKKLLN
Sequences:
>Translated_246_residues MTLKANFYKNRVCLNVLAGSVDNAGEIYNAAEGHVLVGVLSKNYPDVDTAVTDMKKYSEVTNNAVSVGLGAGDPNQSMMV SLISQHVQPQHINQVFTGVATSRALVGQDKSIVNGLISPTGTVGMVKISTGPLSSRSEDAIVPVETAIAMLKDMGGSSVK YFPMGGLESREEFAYVAKACAEQDFWLEPTGGIDLENYEEIMQIALDAGVSKIIPHIYSSIIDKATGNSRPTDVTTLLEM TKKLLN >Mature_245_residues TLKANFYKNRVCLNVLAGSVDNAGEIYNAAEGHVLVGVLSKNYPDVDTAVTDMKKYSEVTNNAVSVGLGAGDPNQSMMVS LISQHVQPQHINQVFTGVATSRALVGQDKSIVNGLISPTGTVGMVKISTGPLSSRSEDAIVPVETAIAMLKDMGGSSVKY FPMGGLESREEFAYVAKACAEQDFWLEPTGGIDLENYEEIMQIALDAGVSKIIPHIYSSIIDKATGNSRPTDVTTLLEMT KKLLN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: 4.1.3.16; 4.1.2.14
Molecular weight: Translated: 26290; Mature: 26159
Theoretical pI: Translated: 4.77; Mature: 4.77
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLKANFYKNRVCLNVLAGSVDNAGEIYNAAEGHVLVGVLSKNYPDVDTAVTDMKKYSEV CCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH TNNAVSVGLGAGDPNQSMMVSLISQHVQPQHINQVFTGVATSRALVGQDKSIVNGLISPT HCCCEEEECCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCC GTVGMVKISTGPLSSRSEDAIVPVETAIAMLKDMGGSSVKYFPMGGLESREEFAYVAKAC CCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHH AEQDFWLEPTGGIDLENYEEIMQIALDAGVSKIIPHIYSSIIDKATGNSRPTDVTTLLEM CCCCCEECCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH TKKLLN HHHHCC >Mature Secondary Structure TLKANFYKNRVCLNVLAGSVDNAGEIYNAAEGHVLVGVLSKNYPDVDTAVTDMKKYSEV CCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH TNNAVSVGLGAGDPNQSMMVSLISQHVQPQHINQVFTGVATSRALVGQDKSIVNGLISPT HCCCEEEECCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCC GTVGMVKISTGPLSSRSEDAIVPVETAIAMLKDMGGSSVKYFPMGGLESREEFAYVAKAC CCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHH AEQDFWLEPTGGIDLENYEEIMQIALDAGVSKIIPHIYSSIIDKATGNSRPTDVTTLLEM CCCCCEECCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH TKKLLN HHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: 4-hydroxy-2-oxoglutarate
Specific reaction: 4-hydroxy-2-oxoglutarate = pyruvate + glyoxylate
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA