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The map label for this gene is licR [H]

Identifier: 209693726

GI number: 209693726

Start: 137970

End: 139940

Strand: Reverse

Name: licR [H]

Synonym: VSAL_I0103

Alternate gene names: 209693726

Gene position: 139940-137970 (Counterclockwise)

Preceding gene: 209693727

Following gene: 209693723

Centisome position: 4.21

GC content: 38.81

Gene sequence:

>1971_bases
TTGATATTATTATTAATACGCATCAATTCACTTAACTTCGGTTCTCTTATGATTCAATTGCCTTATCCACGCCTTAATAC
CATATTCGAAGCACTTAGACATGAACCGCTTCCTCAACAAGAACTGGCACAGCGTTGTGATATTTCGACTCGAACCATAC
GTACTGATATCTCTGCATTAAACGATATTTTGGCCTCATATGGCGCTCAAATTCAGCATCAACGTGGAACGGGTTATCAT
TTCGATATTTACGATGAAGCTCGATTTTCTGATATTGAGAAACAGACTCAAAAAATGAAAACCTCTCCTCGTAACGCCAA
AGATCGCGTTGTGTATTTAATCATGCGCCTTCTCTCTCAAGAGGAAGAATGTAAGTTAGACGATTTAGCCAATCAGTGGT
TTGTTAGTCGTACCTCTTTACAGGCCGACATGACAGAAATCAGAGAGATCTTAGAGCAATACAATTTAGAGATAGTAAGT
AAAGCCCATCATGGCCTGAAACTTTTTGGGGAAGAGCAAGCGATACGAGCCTGTATCGCTCATGTTTTATTTCAGTTTAA
ACCCAGTGATCGCACTTTTATTAATGTCTGTGACCACTTCTTTCCTGAGATTAATTTACCCTCATTAAAAGAAGATTTGC
TGACGTTAATTAATCAAAACCACATCCGATTAACCGATGAAGGGTTGCATCATTTATTGGTGTATTGCGGCATCACTCTG
CATCGAGTCAAGTTAAATTCAGTGATTCATCACGTACATCAACCAAAAATCAGTAATGAAGCGCAAAACGCTGCCCTTGA
TCTAAGTAAAACGATTGAAGTATTACTTAGTGCTCCTCTTCCTCAATCTGAAATTGATTACTTGAGTATTCAAATTGCGG
CTCGCCGAGTAACGGGGGTCACGATTGTCGATACAGAAAAGCACACCGAACAATTAGAGTTAACACATTTTTTATTAGAT
TATGTAAACGAACACTACAATTATGATTTACGTAATGATGAGCTATTAAAGCGTGATTTACTGTGCCATATCACCACCAT
GATATTGCGCGTAAAATACCAAATTACGATACCTAATCCGTTAGTGGATCATATCAAGCGCTATTATCCTTTGGCCTACG
ATATGACGGTTGCGGCTATTTCTCATTGGGGTAAACATTTGATCCCAGATGGCGAGGTTGGTTATCTCGTGATGCATATC
GGCGTTGGCCTAGAGCGTAACTTTGCTTTAGAAGAACAACAGCCGCCAAAAGCACTGTTAGTGTGTGATTCTGGCACTTC
GATTATGCGGTTATTAGAATCACAATTACTTCGCTCCCTACCTCAATTAGATATTCAAAAAATTGATTCAGTAAGAGAGT
ATGAATCGCTAACCAAAGTGGATGCCGATTTTGTTATTTCTACAGAAAAAGTCTCTCAAAAAAACAGACCGACCATTACT
ATTTCGCCGTTACCAACAAGCTTTCAATTAGAGCAGGTTAATAAACTCATATTAATGAATCGCTCCCACCCTTACATGTT
GGATAAATTTTTTGATCAACGTTATTTTTCAGTCCTATCAGAACCAACGACACAAGCTGAGCTGTTAAAAAAATTCACCG
CACATTTCACAGAAGACAATATCACCCCTATTGAGTTTTATGACTCGGTGATTGAACGTGAAAACATCACCTCAACCATA
TTAGGTGAAGGAATTGCCATTCCACACTCATTGGGGCTATTGGCTAATGAGACGAAGGTATACACCATTATTTCTCCTCA
TGGCATCGATTGGGGAAACGGAAAGATTGCACACGTGATCTTTCTTTTTGCTATCAATAAAGACGATTATGAAGAAGCCA
TGAGCTTGTATGATTTATTTGTCACCTTCATGAATGGCAAGGCGGTGGATACGATCTTAGAATGTTTATCGTATGAAGAA
TTTCAATACGTCGCTAAAGAGTGCTGGTTTAATAGAAGAAAAGATTGGTAG

Upstream 100 bases:

>100_bases
TTATTTTACTCATACACAGACTTATTTTTAGTCGAAAAAAATAACTCAAGATAAGAATCACACATTCAATAAATATTGAT
ATCTAGTTACTTAAAACTGG

Downstream 100 bases:

>100_bases
AAACAAAAATCCCAGCAACGACTGGGATTTTTTATGTCGGTATAAAAGTATTAGCTCCGAGGTTTAAACTCAAGAACTGG
CGCTTTCTCACCGTCATTCA

Product: HTH-type transcriptional regulator

Products: NA

Alternate protein names: Putative phosphotransferase enzyme IIB component; Putative PTS system EIIB component; Putative phosphotransferase enzyme IIA component; Putative PTS system EIIA component [H]

Number of amino acids: Translated: 656; Mature: 656

Protein sequence:

>656_residues
MILLLIRINSLNFGSLMIQLPYPRLNTIFEALRHEPLPQQELAQRCDISTRTIRTDISALNDILASYGAQIQHQRGTGYH
FDIYDEARFSDIEKQTQKMKTSPRNAKDRVVYLIMRLLSQEEECKLDDLANQWFVSRTSLQADMTEIREILEQYNLEIVS
KAHHGLKLFGEEQAIRACIAHVLFQFKPSDRTFINVCDHFFPEINLPSLKEDLLTLINQNHIRLTDEGLHHLLVYCGITL
HRVKLNSVIHHVHQPKISNEAQNAALDLSKTIEVLLSAPLPQSEIDYLSIQIAARRVTGVTIVDTEKHTEQLELTHFLLD
YVNEHYNYDLRNDELLKRDLLCHITTMILRVKYQITIPNPLVDHIKRYYPLAYDMTVAAISHWGKHLIPDGEVGYLVMHI
GVGLERNFALEEQQPPKALLVCDSGTSIMRLLESQLLRSLPQLDIQKIDSVREYESLTKVDADFVISTEKVSQKNRPTIT
ISPLPTSFQLEQVNKLILMNRSHPYMLDKFFDQRYFSVLSEPTTQAELLKKFTAHFTEDNITPIEFYDSVIERENITSTI
LGEGIAIPHSLGLLANETKVYTIISPHGIDWGNGKIAHVIFLFAINKDDYEEAMSLYDLFVTFMNGKAVDTILECLSYEE
FQYVAKECWFNRRKDW

Sequences:

>Translated_656_residues
MILLLIRINSLNFGSLMIQLPYPRLNTIFEALRHEPLPQQELAQRCDISTRTIRTDISALNDILASYGAQIQHQRGTGYH
FDIYDEARFSDIEKQTQKMKTSPRNAKDRVVYLIMRLLSQEEECKLDDLANQWFVSRTSLQADMTEIREILEQYNLEIVS
KAHHGLKLFGEEQAIRACIAHVLFQFKPSDRTFINVCDHFFPEINLPSLKEDLLTLINQNHIRLTDEGLHHLLVYCGITL
HRVKLNSVIHHVHQPKISNEAQNAALDLSKTIEVLLSAPLPQSEIDYLSIQIAARRVTGVTIVDTEKHTEQLELTHFLLD
YVNEHYNYDLRNDELLKRDLLCHITTMILRVKYQITIPNPLVDHIKRYYPLAYDMTVAAISHWGKHLIPDGEVGYLVMHI
GVGLERNFALEEQQPPKALLVCDSGTSIMRLLESQLLRSLPQLDIQKIDSVREYESLTKVDADFVISTEKVSQKNRPTIT
ISPLPTSFQLEQVNKLILMNRSHPYMLDKFFDQRYFSVLSEPTTQAELLKKFTAHFTEDNITPIEFYDSVIERENITSTI
LGEGIAIPHSLGLLANETKVYTIISPHGIDWGNGKIAHVIFLFAINKDDYEEAMSLYDLFVTFMNGKAVDTILECLSYEE
FQYVAKECWFNRRKDW
>Mature_656_residues
MILLLIRINSLNFGSLMIQLPYPRLNTIFEALRHEPLPQQELAQRCDISTRTIRTDISALNDILASYGAQIQHQRGTGYH
FDIYDEARFSDIEKQTQKMKTSPRNAKDRVVYLIMRLLSQEEECKLDDLANQWFVSRTSLQADMTEIREILEQYNLEIVS
KAHHGLKLFGEEQAIRACIAHVLFQFKPSDRTFINVCDHFFPEINLPSLKEDLLTLINQNHIRLTDEGLHHLLVYCGITL
HRVKLNSVIHHVHQPKISNEAQNAALDLSKTIEVLLSAPLPQSEIDYLSIQIAARRVTGVTIVDTEKHTEQLELTHFLLD
YVNEHYNYDLRNDELLKRDLLCHITTMILRVKYQITIPNPLVDHIKRYYPLAYDMTVAAISHWGKHLIPDGEVGYLVMHI
GVGLERNFALEEQQPPKALLVCDSGTSIMRLLESQLLRSLPQLDIQKIDSVREYESLTKVDADFVISTEKVSQKNRPTIT
ISPLPTSFQLEQVNKLILMNRSHPYMLDKFFDQRYFSVLSEPTTQAELLKKFTAHFTEDNITPIEFYDSVIERENITSTI
LGEGIAIPHSLGLLANETKVYTIISPHGIDWGNGKIAHVIFLFAINKDDYEEAMSLYDLFVTFMNGKAVDTILECLSYEE
FQYVAKECWFNRRKDW

Specific function: Positive regulator of the licABCH operon [H]

COG id: COG3711

COG function: function code K; Transcriptional antiterminator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PTS EIIB type-2 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013196
- InterPro:   IPR007737
- InterPro:   IPR011608
- InterPro:   IPR016152
- InterPro:   IPR002178
- InterPro:   IPR013011
- InterPro:   IPR003501
- InterPro:   IPR011991 [H]

Pfam domain/function: PF08279 HTH_11; PF05043 Mga; PF00874 PRD; PF00359 PTS_EIIA_2; PF02302 PTS_IIB [H]

EC number: =2.7.1.69 [H]

Molecular weight: Translated: 75782; Mature: 75782

Theoretical pI: Translated: 5.95; Mature: 5.95

Prosite motif: PS51094 PTS_EIIA_TYPE_2 ; PS51099 PTS_EIIB_TYPE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILLLIRINSLNFGSLMIQLPYPRLNTIFEALRHEPLPQQELAQRCDISTRTIRTDISAL
CEEEEEEECCCCCCEEEEEECCCHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHH
NDILASYGAQIQHQRGTGYHFDIYDEARFSDIEKQTQKMKTSPRNAKDRVVYLIMRLLSQ
HHHHHHHCCCEEECCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
EEECKLDDLANQWFVSRTSLQADMTEIREILEQYNLEIVSKAHHGLKLFGEEQAIRACIA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCEECCHHHHHHHHHH
HVLFQFKPSDRTFINVCDHFFPEINLPSLKEDLLTLINQNHIRLTDEGLHHLLVYCGITL
HHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEECHHHHHHHHHHHCCHH
HRVKLNSVIHHVHQPKISNEAQNAALDLSKTIEVLLSAPLPQSEIDYLSIQIAARRVTGV
EEHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEHCCCE
TIVDTEKHTEQLELTHFLLDYVNEHYNYDLRNDELLKRDLLCHITTMILRVKYQITIPNP
EEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHEEEEEECCCH
LVDHIKRYYPLAYDMTVAAISHWGKHLIPDGEVGYLVMHIGVGLERNFALEEQQPPKALL
HHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEE
VCDSGTSIMRLLESQLLRSLPQLDIQKIDSVREYESLTKVDADFVISTEKVSQKNRPTIT
EECCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCEEE
ISPLPTSFQLEQVNKLILMNRSHPYMLDKFFDQRYFSVLSEPTTQAELLKKFTAHFTEDN
EECCCCCHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCC
ITPIEFYDSVIERENITSTILGEGIAIPHSLGLLANETKVYTIISPHGIDWGNGKIAHVI
CCHHHHHHHHHHHCCCHHHHHCCCCCCCCHHCCEECCCEEEEEECCCCCCCCCCCEEEEE
FLFAINKDDYEEAMSLYDLFVTFMNGKAVDTILECLSYEEFQYVAKECWFNRRKDW
EEEEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MILLLIRINSLNFGSLMIQLPYPRLNTIFEALRHEPLPQQELAQRCDISTRTIRTDISAL
CEEEEEEECCCCCCEEEEEECCCHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHH
NDILASYGAQIQHQRGTGYHFDIYDEARFSDIEKQTQKMKTSPRNAKDRVVYLIMRLLSQ
HHHHHHHCCCEEECCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
EEECKLDDLANQWFVSRTSLQADMTEIREILEQYNLEIVSKAHHGLKLFGEEQAIRACIA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCEECCHHHHHHHHHH
HVLFQFKPSDRTFINVCDHFFPEINLPSLKEDLLTLINQNHIRLTDEGLHHLLVYCGITL
HHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEECHHHHHHHHHHHCCHH
HRVKLNSVIHHVHQPKISNEAQNAALDLSKTIEVLLSAPLPQSEIDYLSIQIAARRVTGV
EEHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEHCCCE
TIVDTEKHTEQLELTHFLLDYVNEHYNYDLRNDELLKRDLLCHITTMILRVKYQITIPNP
EEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHEEEEEECCCH
LVDHIKRYYPLAYDMTVAAISHWGKHLIPDGEVGYLVMHIGVGLERNFALEEQQPPKALL
HHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEE
VCDSGTSIMRLLESQLLRSLPQLDIQKIDSVREYESLTKVDADFVISTEKVSQKNRPTIT
EECCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCEEE
ISPLPTSFQLEQVNKLILMNRSHPYMLDKFFDQRYFSVLSEPTTQAELLKKFTAHFTEDN
EECCCCCHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCC
ITPIEFYDSVIERENITSTILGEGIAIPHSLGLLANETKVYTIISPHGIDWGNGKIAHVI
CCHHHHHHHHHHHCCCHHHHHCCCCCCCCHHCCEECCCEEEEEECCCCCCCCCCCEEEEE
FLFAINKDDYEEAMSLYDLFVTFMNGKAVDTILECLSYEEFQYVAKECWFNRRKDW
EEEEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8990303; 8969509; 9384377; 10438772 [H]