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The map label for this gene is yrdA [H]

Identifier: 209693709

GI number: 209693709

Start: 86057

End: 86602

Strand: Reverse

Name: yrdA [H]

Synonym: VSAL_I0085

Alternate gene names: 209693709

Gene position: 86602-86057 (Counterclockwise)

Preceding gene: 209693710

Following gene: 209693705

Centisome position: 2.6

GC content: 34.62

Gene sequence:

>546_bases
ATGAATTCATCATTACGTAGCTATAAATCAACCTTTCCTACTATTGGCTTACGCTCTTATATAGATTCATCAAGCATTTT
AATTGGAGATATCAATATTGGTGATGATTGCAGTGTTTGGCCTTTAGTTGTAGCTCGAGGTGATGTGAATTCAATAGTAA
TAGGACAACGAACCAATATCCAAGATGGTTCCATCTTACATGTCACACATAAAAATCCAGAAAACCCGAAAGGAGCCCCA
TTACTTATTGGAGATGACGTAACTATTGGTCACAAAGTTATGCTTCATGGGTGTGAAATAAAGGATCGTGTTCTTGTTGG
TATGGGAAGCATCATTTTAGATAATGCTATTATTGAATCGGATGTCATGATTGGAGCTGGTAGCTTAATTCCACCCAATA
AAATATTAAAGAGTGGCTACCTTTATATAGGTAGCCCGGTAAAACAAGTAAGATCGTTATCAACTGATGAAATTGGCTTT
CTAAAAAAATCAGCGATGAATTACGTTTCATTTAAAAATAGTTATATAAATGAGGAAGCTATTTAA

Upstream 100 bases:

>100_bases
ATTTTATGTTTTTATGGTTAAAGTCCGTACAAACCAATACTAAATTAGCTTTATCACCCCATTTAATTAACACTAAATTA
TCATTTTCAAGGGATATCAT

Downstream 100 bases:

>100_bases
TCTCAACTTCCCCAGAAGCATTGAACTCTTCATCTTCAATCAATGCTTCTGCATGTTCCTCTATATCAAAACGATATTCC
TCAAAAATACGTAAAGCATC

Product: transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 181; Mature: 181

Protein sequence:

>181_residues
MNSSLRSYKSTFPTIGLRSYIDSSSILIGDINIGDDCSVWPLVVARGDVNSIVIGQRTNIQDGSILHVTHKNPENPKGAP
LLIGDDVTIGHKVMLHGCEIKDRVLVGMGSIILDNAIIESDVMIGAGSLIPPNKILKSGYLYIGSPVKQVRSLSTDEIGF
LKKSAMNYVSFKNSYINEEAI

Sequences:

>Translated_181_residues
MNSSLRSYKSTFPTIGLRSYIDSSSILIGDINIGDDCSVWPLVVARGDVNSIVIGQRTNIQDGSILHVTHKNPENPKGAP
LLIGDDVTIGHKVMLHGCEIKDRVLVGMGSIILDNAIIESDVMIGAGSLIPPNKILKSGYLYIGSPVKQVRSLSTDEIGF
LKKSAMNYVSFKNSYINEEAI
>Mature_181_residues
MNSSLRSYKSTFPTIGLRSYIDSSSILIGDINIGDDCSVWPLVVARGDVNSIVIGQRTNIQDGSILHVTHKNPENPKGAP
LLIGDDVTIGHKVMLHGCEIKDRVLVGMGSIILDNAIIESDVMIGAGSLIPPNKILKSGYLYIGSPVKQVRSLSTDEIGF
LKKSAMNYVSFKNSYINEEAI

Specific function: Unknown

COG id: COG0663

COG function: function code R; Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gamma-class carbonic anhydrase family [H]

Homologues:

Organism=Escherichia coli, GI87082240, Length=178, Percent_Identity=63.4831460674157, Blast_Score=238, Evalue=2e-64,
Organism=Escherichia coli, GI1787667, Length=156, Percent_Identity=33.3333333333333, Blast_Score=102, Evalue=1e-23,
Organism=Escherichia coli, GI87081681, Length=165, Percent_Identity=29.6969696969697, Blast_Score=91, Evalue=4e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011004 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19588; Mature: 19588

Theoretical pI: Translated: 6.94; Mature: 6.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSSLRSYKSTFPTIGLRSYIDSSSILIGDINIGDDCSVWPLVVARGDVNSIVIGQRTNI
CCCHHHHHHHCCCCCCHHHHCCCCCEEEEECCCCCCCCEEEEEEECCCCCEEEEECCCCC
QDGSILHVTHKNPENPKGAPLLIGDDVTIGHKVMLHGCEIKDRVLVGMGSIILDNAIIES
CCCCEEEEECCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCEEEEECCHHHHHCEEECC
DVMIGAGSLIPPNKILKSGYLYIGSPVKQVRSLSTDEIGFLKKSAMNYVSFKNSYINEEA
CEEEECCCCCCHHHHHHCCCEEECCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
I
C
>Mature Secondary Structure
MNSSLRSYKSTFPTIGLRSYIDSSSILIGDINIGDDCSVWPLVVARGDVNSIVIGQRTNI
CCCHHHHHHHCCCCCCHHHHCCCCCEEEEECCCCCCCCEEEEEEECCCCCEEEEECCCCC
QDGSILHVTHKNPENPKGAPLLIGDDVTIGHKVMLHGCEIKDRVLVGMGSIILDNAIIES
CCCCEEEEECCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCEEEEECCHHHHHCEEECC
DVMIGAGSLIPPNKILKSGYLYIGSPVKQVRSLSTDEIGFLKKSAMNYVSFKNSYINEEA
CEEEECCCCCCHHHHHHCCCEEECCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
I
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 10493123 [H]