| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197120078
Identifier: 197120078
GI number: 197120078
Start: 4240986
End: 4241852
Strand: Direct
Name: 197120078
Synonym: Gbem_3717
Alternate gene names: NA
Gene position: 4240986-4241852 (Clockwise)
Preceding gene: 197120076
Following gene: 197120079
Centisome position: 91.89
GC content: 63.21
Gene sequence:
>867_bases ATGCCGCTTTGGTTCACGCTCACACTCCTATCCGCGTTCTTTCTGGCAAGCAGCGACGCGCTGACCAAGAAGGCGGTGCA CGTCCATAACGAGTACCTGGTCACCCTGGCCCGGATCCTCCCCACCTTGCCGCTGTTCCTCATCCCGCTCCCCTTTCTGG AGATCCCGCATCTGACGCGGGAATTCTGGCTCTGCATACTCACCGGGCTCCCCCTGGAGGCGGTGGCCATCTTCCTGTAC ACCAAGGCCTTGAAGCTCTCACCGCTCTCGCTCACCCTTCCGCTTTTGTCGCTTACGCCGCTTTTGTTGCTGGTGGTCCC CTTCCTGCTCCTCGGGGAGCGCATCTCCCCGGCCGGGAGCGCCGGCGTCCTGCTCATAGCGCTCGGGGGGTACCTGCTCA AGGCCAGGCGCGGACAGGACGGGGTCCTGGCTCCGCTCAAGGCGCTGGCGAAGGAAAAGGGGGCGCTATGCATGCTGGGA GTCGCCACCATCTACAGCTTCACCTCCACCCTCGGCAAGCGCGCCATCGACCTTTCCTCCCCGCTGGTCTTCGCCGCGAT CTATCTGCCGCTCCTGGCGCTTTTCATCACCCCGTTCGCCCTCTACAAGGGAAGGGGAGAACTGCGGGAAATCGTCCGTA ACGGCACCGTCCGCGCTTCGCTTCTCCCTGCGCTCTTCTACGCGCTGCAGGCGCTCACCCACGTCTTCGCCATCAACCTC ACCAACGTCGCCTACATGATCGCCGTCAAGAGGCTGAGCCTTTTGTTCGGCGTCATCTACGGCCGCTACCTCTTCCAGGA ACAAGGGGGGATCCTCGCCACCTTGATCATGCTGGCCGGGGTCTGCCTCATCGTGATCGGGGGATGA
Upstream 100 bases:
>100_bases GCCGCTTTTCGCGCCCCAGTCAACCTCCGCTACCCTTTTTTCCAATGAAAAGATCAGGCGGGCGGCTGCAAGGGAACCTT TTTCCGTTATCATTCCCACC
Downstream 100 bases:
>100_bases GACATCCATCTTCGTCCTGAAGTTGCGCCTCACGGGGCCGACCGTCGACTAATTGACACCGGCAAGCAAATGCATATTCA AATTATTGACCATAGCGCCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 288; Mature: 287
Protein sequence:
>288_residues MPLWFTLTLLSAFFLASSDALTKKAVHVHNEYLVTLARILPTLPLFLIPLPFLEIPHLTREFWLCILTGLPLEAVAIFLY TKALKLSPLSLTLPLLSLTPLLLLVVPFLLLGERISPAGSAGVLLIALGGYLLKARRGQDGVLAPLKALAKEKGALCMLG VATIYSFTSTLGKRAIDLSSPLVFAAIYLPLLALFITPFALYKGRGELREIVRNGTVRASLLPALFYALQALTHVFAINL TNVAYMIAVKRLSLLFGVIYGRYLFQEQGGILATLIMLAGVCLIVIGG
Sequences:
>Translated_288_residues MPLWFTLTLLSAFFLASSDALTKKAVHVHNEYLVTLARILPTLPLFLIPLPFLEIPHLTREFWLCILTGLPLEAVAIFLY TKALKLSPLSLTLPLLSLTPLLLLVVPFLLLGERISPAGSAGVLLIALGGYLLKARRGQDGVLAPLKALAKEKGALCMLG VATIYSFTSTLGKRAIDLSSPLVFAAIYLPLLALFITPFALYKGRGELREIVRNGTVRASLLPALFYALQALTHVFAINL TNVAYMIAVKRLSLLFGVIYGRYLFQEQGGILATLIMLAGVCLIVIGG >Mature_287_residues PLWFTLTLLSAFFLASSDALTKKAVHVHNEYLVTLARILPTLPLFLIPLPFLEIPHLTREFWLCILTGLPLEAVAIFLYT KALKLSPLSLTLPLLSLTPLLLLVVPFLLLGERISPAGSAGVLLIALGGYLLKARRGQDGVLAPLKALAKEKGALCMLGV ATIYSFTSTLGKRAIDLSSPLVFAAIYLPLLALFITPFALYKGRGELREIVRNGTVRASLLPALFYALQALTHVFAINLT NVAYMIAVKRLSLLFGVIYGRYLFQEQGGILATLIMLAGVCLIVIGG
Specific function: Unknown
COG id: COG0697
COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31241; Mature: 31110
Theoretical pI: Translated: 10.12; Mature: 10.12
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPLWFTLTLLSAFFLASSDALTKKAVHVHNEYLVTLARILPTLPLFLIPLPFLEIPHLTR CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCHHHHH EFWLCILTGLPLEAVAIFLYTKALKLSPLSLTLPLLSLTPLLLLVVPFLLLGERISPAGS HHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC AGVLLIALGGYLLKARRGQDGVLAPLKALAKEKGALCMLGVATIYSFTSTLGKRAIDLSS CCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHCCCC PLVFAAIYLPLLALFITPFALYKGRGELREIVRNGTVRASLLPALFYALQALTHVFAINL HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH TNVAYMIAVKRLSLLFGVIYGRYLFQEQGGILATLIMLAGVCLIVIGG HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHEEECC >Mature Secondary Structure PLWFTLTLLSAFFLASSDALTKKAVHVHNEYLVTLARILPTLPLFLIPLPFLEIPHLTR CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCHHHHH EFWLCILTGLPLEAVAIFLYTKALKLSPLSLTLPLLSLTPLLLLVVPFLLLGERISPAGS HHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC AGVLLIALGGYLLKARRGQDGVLAPLKALAKEKGALCMLGVATIYSFTSTLGKRAIDLSS CCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHCCCC PLVFAAIYLPLLALFITPFALYKGRGELREIVRNGTVRASLLPALFYALQALTHVFAINL HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH TNVAYMIAVKRLSLLFGVIYGRYLFQEQGGILATLIMLAGVCLIVIGG HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA