| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is ykuE [H]
Identifier: 197120076
GI number: 197120076
Start: 4239282
End: 4240136
Strand: Direct
Name: ykuE [H]
Synonym: Gbem_3715
Alternate gene names: 197120076
Gene position: 4239282-4240136 (Clockwise)
Preceding gene: 197120050
Following gene: 197120078
Centisome position: 91.86
GC content: 65.5
Gene sequence:
>855_bases ATGGCAGCAATCAGCAGGCGCCTGTTTCTCCTGGGGGGATTTTCCCTTTTCCCCTACCTCTACCTGGAAAGGTCGTCGGT GGCGGTGCGCAGGTACCGGGTGCCGGTGAGAAATCTCCCCGAGGCCCTTGCCGGGTTCACCATCCTGCACCTGACCGACC TGCACGACAAGGAGTTCGGGGAGGGGAACGAAGAGCTTCTCGAACTGCTGCGCCGCCTGCGCTTCGACCTGGTGGCGCTG ACTGGGGACCTCGTGGTCGGGGGGAACCCGCTCCTCAAACCTGCGCTCGATCTCTTGGCGGGGATACGCCGCTTTTCCAA CGCGCCGGTCTATTCGGTCCCCGGCAATCACGAATATACCCTCTCCCGCATAGAGGAACACAACGAGAAGCTTGCCCGGG CGGGGGTCCAGTTGCTGAGTAACAAAGCGGTGCCGCTCAAGTTCGGGAAGGCGCGGCTCTGGGTGGCGGGGGTGGACGAC CCGGTGACCCGCAGGGCCCGGCTGGACCAGGCACTTGCTGAAGCCGACGCGCGGTCGCCTCGGGTTTTGCTCTCCCACGC GCCGCACCCCTTCCCTGAGGCGGCGCTCCAGGGAGTCGACCTTATGCTCGCCGGGCATACCCACGGAGGGCAGATCCGCC TCCCGCTTATCGGCGCCGCCTACGTCCCGGACATGGGGCTCTTTCCCGAATGGGACTACGGCCTTTACAGCTCGGGGACT ACCTCCCTCATCGTCAATGGGGGGCTCGGAGAAAGCTGGCTTCCGCTACGCGTCAACATCAGGCCGGAAGTGGTGCTGGC GACCCTCACGCCGCTTCGGGAAGCAGGGCCGGGGGCAAACTACGGGGTCGCCTGA
Upstream 100 bases:
>100_bases TTCGCCCTCCGTCCGGTTCGCGGCTGCTCCCGATTTCTGGCGCTGCAACGGCAAACTGATATACTCTGGCTCGGTTTTTT ACTGAGGAGGACGTGTAGCT
Downstream 100 bases:
>100_bases CCTCCCTGCGCCGGGAGGACCACCTCGGCCATAAGCTCCGCCATGCGCCCTGCCGGAAGCCTCGCGTTGTTGAAGACCAG ATGGTACAGGGTCGGCTCCG
Product: metallophosphoesterase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 284; Mature: 283
Protein sequence:
>284_residues MAAISRRLFLLGGFSLFPYLYLERSSVAVRRYRVPVRNLPEALAGFTILHLTDLHDKEFGEGNEELLELLRRLRFDLVAL TGDLVVGGNPLLKPALDLLAGIRRFSNAPVYSVPGNHEYTLSRIEEHNEKLARAGVQLLSNKAVPLKFGKARLWVAGVDD PVTRRARLDQALAEADARSPRVLLSHAPHPFPEAALQGVDLMLAGHTHGGQIRLPLIGAAYVPDMGLFPEWDYGLYSSGT TSLIVNGGLGESWLPLRVNIRPEVVLATLTPLREAGPGANYGVA
Sequences:
>Translated_284_residues MAAISRRLFLLGGFSLFPYLYLERSSVAVRRYRVPVRNLPEALAGFTILHLTDLHDKEFGEGNEELLELLRRLRFDLVAL TGDLVVGGNPLLKPALDLLAGIRRFSNAPVYSVPGNHEYTLSRIEEHNEKLARAGVQLLSNKAVPLKFGKARLWVAGVDD PVTRRARLDQALAEADARSPRVLLSHAPHPFPEAALQGVDLMLAGHTHGGQIRLPLIGAAYVPDMGLFPEWDYGLYSSGT TSLIVNGGLGESWLPLRVNIRPEVVLATLTPLREAGPGANYGVA >Mature_283_residues AAISRRLFLLGGFSLFPYLYLERSSVAVRRYRVPVRNLPEALAGFTILHLTDLHDKEFGEGNEELLELLRRLRFDLVALT GDLVVGGNPLLKPALDLLAGIRRFSNAPVYSVPGNHEYTLSRIEEHNEKLARAGVQLLSNKAVPLKFGKARLWVAGVDDP VTRRARLDQALAEADARSPRVLLSHAPHPFPEAALQGVDLMLAGHTHGGQIRLPLIGAAYVPDMGLFPEWDYGLYSSGTT SLIVNGGLGESWLPLRVNIRPEVVLATLTPLREAGPGANYGVA
Specific function: Unknown
COG id: COG1408
COG function: function code R; Predicted phosphohydrolases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the metallophosphoesterase superfamily [H]
Homologues:
Organism=Homo sapiens, GI210031196, Length=265, Percent_Identity=28.6792452830189, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI210031210, Length=265, Percent_Identity=28.6792452830189, Blast_Score=73, Evalue=4e-13, Organism=Escherichia coli, GI87081695, Length=278, Percent_Identity=30.5755395683453, Blast_Score=85, Evalue=7e-18, Organism=Caenorhabditis elegans, GI115535030, Length=279, Percent_Identity=26.8817204301075, Blast_Score=81, Evalue=6e-16, Organism=Caenorhabditis elegans, GI115535028, Length=279, Percent_Identity=26.8817204301075, Blast_Score=81, Evalue=6e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004843 - InterPro: IPR006311 [H]
Pfam domain/function: PF00149 Metallophos [H]
EC number: NA
Molecular weight: Translated: 31047; Mature: 30916
Theoretical pI: Translated: 8.76; Mature: 8.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 0.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAAISRRLFLLGGFSLFPYLYLERSSVAVRRYRVPVRNLPEALAGFTILHLTDLHDKEFG CCCHHHHHHHHCCHHHHHHHEEECCHHEEHHHCCCHHHHHHHHHCEEEEEEECCCCCCCC EGNEELLELLRRLRFDLVALTGDLVVGGNPLLKPALDLLAGIRRFSNAPVYSVPGNHEYT CCCHHHHHHHHHHHHHHEEEECCEEECCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCHH LSRIEEHNEKLARAGVQLLSNKAVPLKFGKARLWVAGVDDPVTRRARLDQALAEADARSP HHHHHHHHHHHHHHHHHHHHCCCCEEEECCEEEEEECCCCHHHHHHHHHHHHHHHCCCCC RVLLSHAPHPFPEAALQGVDLMLAGHTHGGQIRLPLIGAAYVPDMGLFPEWDYGLYSSGT EEEECCCCCCCHHHHHCCCEEEEECCCCCCEEEEEEEEHHHCCCCCCCCCCCCCCCCCCC TSLIVNGGLGESWLPLRVNIRPEVVLATLTPLREAGPGANYGVA CEEEEECCCCCCCCEEEECCCCCEEEEEHHHHHHCCCCCCCCCC >Mature Secondary Structure AAISRRLFLLGGFSLFPYLYLERSSVAVRRYRVPVRNLPEALAGFTILHLTDLHDKEFG CCHHHHHHHHCCHHHHHHHEEECCHHEEHHHCCCHHHHHHHHHCEEEEEEECCCCCCCC EGNEELLELLRRLRFDLVALTGDLVVGGNPLLKPALDLLAGIRRFSNAPVYSVPGNHEYT CCCHHHHHHHHHHHHHHEEEECCEEECCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCHH LSRIEEHNEKLARAGVQLLSNKAVPLKFGKARLWVAGVDDPVTRRARLDQALAEADARSP HHHHHHHHHHHHHHHHHHHHCCCCEEEECCEEEEEECCCCHHHHHHHHHHHHHHHCCCCC RVLLSHAPHPFPEAALQGVDLMLAGHTHGGQIRLPLIGAAYVPDMGLFPEWDYGLYSSGT EEEECCCCCCCHHHHHCCCEEEEECCCCCCEEEEEEEEHHHCCCCCCCCCCCCCCCCCCC TSLIVNGGLGESWLPLRVNIRPEVVLATLTPLREAGPGANYGVA CEEEEECCCCCCCCEEEECCCCCEEEEEHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]