| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197119762
Identifier: 197119762
GI number: 197119762
Start: 3912900
End: 3913910
Strand: Direct
Name: 197119762
Synonym: Gbem_3398
Alternate gene names: NA
Gene position: 3912900-3913910 (Clockwise)
Preceding gene: 197119761
Following gene: 308535364
Centisome position: 84.78
GC content: 61.72
Gene sequence:
>1011_bases ATGCGGACTTTTTTGAAGCTGGCCCTGTTGGCCGTGGCGATCGGCACCATGTTTGGCTGCGCGCACAACTATTACAACAT CCCCCAGGAGACGCTTGAGAAGAAGGTGAAGACCATCGGGGTCGCCCCGATCTTCGTCGATCCCGACTCCGATATCAGAC ACCCGAGCAAGGACGCCATCGTCTCGCTGGTGCGGACCTACAACGCCAGGAACGAGAAGGAGCTGATCGCCAGGCTGCGC GGGACCGGCATCTTCTACGCGGTGAGACAGGTGGACGGGGACCCGGCGCGGCTCTTCTCCACCTTGGTCTCGAACAAGGA AAAACGGGATGACGCCGGAATCATCTACAACAAGTACTTCATCAAGAAGGACGAGTTGAAGCAGCTCATGACCGACAACG GGCTCGACGCCGTCCTCTTCGTCACGGTGAGCGGGCTCACCAGACAGGGGAAAGTCTTCTCCAGCAACTACCTCTCTTAC CTGGACACGGACTTCAACTACCTCGTCATGACCGCGCAGATGATCGACCGCGAAGGGAACACGGTCTGGGAATACCCCAA CTTCAGGCGGGCTTCGCTCTCGTTCCCGCTTTTCTTCCCGCTGCAGTACCCCGATTTCGACGAGGCCGCGGCCAACCTGA GCGAAAAAGTCGACGTGAAGTTCAAGACCGTCGCCGGCGTGAACGCCGCCTTCGCCAAAACCGAGGCTTCTGCCATCGCC AACGCACCTGAGGTTTCCGTCCTCTACGCGCGGCAGTTCGACGAGATGCTCGCGCTCATGAAGACCTACAAGCCGCTCTT CGCCAAGGAGAAGGAGAAGGATGTCCCCGCCCCGGTAAGCGTTCCTTCCGGCTATGCCCCGGCCAAGGCGGCGGTCCCTG TGGCGGCGCCGGTAGCGCCGCAGCCTGCAGCCGCAACGGCGCCTGCTACTGCGGCACCCACGCCACTTAAGAGCGCCCCG GTGCAACTGGCGCCGGGCGAAATCGTCCCGGAGGAGCCGCCGGCGAAGTAA
Upstream 100 bases:
>100_bases ATCATGCTGGAGGCATAGCAATAAGCTGTGGCACTTCCGGTAAGGTTCTGATATAAGACGGCATGGCAGTTAGAATCCGT TAGAGGAGGGCTTCATCCAG
Downstream 100 bases:
>100_bases ACCATCCCCCTCCGCCATCCCTTCGCCCAAGGCTACGGGGGACAAGGAAAAAGCAAAAAGGCGGCGCGGGATTCACTCCC TGCGTCGCCTTTTCATATTG
Product: lipoprotein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 336; Mature: 336
Protein sequence:
>336_residues MRTFLKLALLAVAIGTMFGCAHNYYNIPQETLEKKVKTIGVAPIFVDPDSDIRHPSKDAIVSLVRTYNARNEKELIARLR GTGIFYAVRQVDGDPARLFSTLVSNKEKRDDAGIIYNKYFIKKDELKQLMTDNGLDAVLFVTVSGLTRQGKVFSSNYLSY LDTDFNYLVMTAQMIDREGNTVWEYPNFRRASLSFPLFFPLQYPDFDEAAANLSEKVDVKFKTVAGVNAAFAKTEASAIA NAPEVSVLYARQFDEMLALMKTYKPLFAKEKEKDVPAPVSVPSGYAPAKAAVPVAAPVAPQPAAATAPATAAPTPLKSAP VQLAPGEIVPEEPPAK
Sequences:
>Translated_336_residues MRTFLKLALLAVAIGTMFGCAHNYYNIPQETLEKKVKTIGVAPIFVDPDSDIRHPSKDAIVSLVRTYNARNEKELIARLR GTGIFYAVRQVDGDPARLFSTLVSNKEKRDDAGIIYNKYFIKKDELKQLMTDNGLDAVLFVTVSGLTRQGKVFSSNYLSY LDTDFNYLVMTAQMIDREGNTVWEYPNFRRASLSFPLFFPLQYPDFDEAAANLSEKVDVKFKTVAGVNAAFAKTEASAIA NAPEVSVLYARQFDEMLALMKTYKPLFAKEKEKDVPAPVSVPSGYAPAKAAVPVAAPVAPQPAAATAPATAAPTPLKSAP VQLAPGEIVPEEPPAK >Mature_336_residues MRTFLKLALLAVAIGTMFGCAHNYYNIPQETLEKKVKTIGVAPIFVDPDSDIRHPSKDAIVSLVRTYNARNEKELIARLR GTGIFYAVRQVDGDPARLFSTLVSNKEKRDDAGIIYNKYFIKKDELKQLMTDNGLDAVLFVTVSGLTRQGKVFSSNYLSY LDTDFNYLVMTAQMIDREGNTVWEYPNFRRASLSFPLFFPLQYPDFDEAAANLSEKVDVKFKTVAGVNAAFAKTEASAIA NAPEVSVLYARQFDEMLALMKTYKPLFAKEKEKDVPAPVSVPSGYAPAKAAVPVAAPVAPQPAAATAPATAAPTPLKSAP VQLAPGEIVPEEPPAK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36806; Mature: 36806
Theoretical pI: Translated: 8.74; Mature: 8.74
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRTFLKLALLAVAIGTMFGCAHNYYNIPQETLEKKVKTIGVAPIFVDPDSDIRHPSKDAI CHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCHHHH VSLVRTYNARNEKELIARLRGTGIFYAVRQVDGDPARLFSTLVSNKEKRDDAGIIYNKYF HHHHHHHCCCCHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHCCCCCCCCCCEEEEEEE IKKDELKQLMTDNGLDAVLFVTVSGLTRQGKVFSSNYLSYLDTDFNYLVMTAQMIDREGN ECHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHCCHHHHHCCCCCEEEEEHHHHHCCCC TVWEYPNFRRASLSFPLFFPLQYPDFDEAAANLSEKVDVKFKTVAGVNAAFAKTEASAIA EEECCCCCCEEEECCEEEEECCCCCHHHHHHCCCHHCCEEEEEECCCCHHHHHHHHHHHC NAPEVSVLYARQFDEMLALMKTYKPLFAKEKEKDVPAPVSVPSGYAPAKAAVPVAAPVAP CCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCC QPAAATAPATAAPTPLKSAPVQLAPGEIVPEEPPAK CCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCC >Mature Secondary Structure MRTFLKLALLAVAIGTMFGCAHNYYNIPQETLEKKVKTIGVAPIFVDPDSDIRHPSKDAI CHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCHHHH VSLVRTYNARNEKELIARLRGTGIFYAVRQVDGDPARLFSTLVSNKEKRDDAGIIYNKYF HHHHHHHCCCCHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHCCCCCCCCCCEEEEEEE IKKDELKQLMTDNGLDAVLFVTVSGLTRQGKVFSSNYLSYLDTDFNYLVMTAQMIDREGN ECHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHCCHHHHHCCCCCEEEEEHHHHHCCCC TVWEYPNFRRASLSFPLFFPLQYPDFDEAAANLSEKVDVKFKTVAGVNAAFAKTEASAIA EEECCCCCCEEEECCEEEEECCCCCHHHHHHCCCHHCCEEEEEECCCCHHHHHHHHHHHC NAPEVSVLYARQFDEMLALMKTYKPLFAKEKEKDVPAPVSVPSGYAPAKAAVPVAAPVAP CCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCC QPAAATAPATAAPTPLKSAPVQLAPGEIVPEEPPAK CCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA