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The map label for this gene is ylmD [H]

Identifier: 197119761

GI number: 197119761

Start: 3912023

End: 3912817

Strand: Direct

Name: ylmD [H]

Synonym: Gbem_3397

Alternate gene names: 197119761

Gene position: 3912023-3912817 (Clockwise)

Preceding gene: 197119760

Following gene: 197119762

Centisome position: 84.76

GC content: 64.53

Gene sequence:

>795_bases
ATGGAAATGCAAAAAGCAGGAAAGATCCAATACCTGAAACCCGCCCTCGGCGCAGGCGGAGTCGTAGCCGGCTTCACCAC
CCGCCACGAGGGTGTTTCCCGCCCGCCATACAACTCGCTGAACCTGGGGAGCAACACCCTCGATTCCTCCCACAACGTGG
AAGGAAACCGCAGCCTCCTGGCCCGAAGCCTCGGCTCAACCCTGGACCGATTCCTGACCGTGAGCCAGGTGCACGGCACG
GACCTCCTGGTGATCGACGCCCCCAACCCGGAGCTGTCCCACTTCCTGAAGCTCGAATGCGACGGCATCGTCACCAATCA
GCCGGGGATCATGATCGCCATCTGCGTGGCCGACTGCGTGCCGATCCTTCTGCACGACCCGGTGCAGCGCGTAGTGGCCG
CCCTGCACGCGGGATGGCAGGGGACGGTGGCCAACATCGTCGGCAAAGGGGTCGAGGCGATGACCACCCTCTTTGGCTGC
GACCGCAAAGACATACGCGCTGCCCTCGGCCCGCACATCTCCGGCTGCTGCTACGAGGTGGACCAGCCGGTCCGCGACGC
CTTTAAAAAGGCCGGCGCCGCCTGGGATCTGGCGGCCAAGGAGCAGGGAGACGGCAAATGGCTTCTGGACCTGGGAGAGG
CGAACCGGCTCTTGCTCAAGGACGCCGGGCTTCGCGCCGACCAGATCCAGTCCAGCGACCTCTGCGTAAGCTGCAACCAG
GAGCTCTTCTTCTCCTACCGCCGCGACGGCGGGGATACCGGCAGACAGGTCGGGTTCATCATGCTGGAGGCATAG

Upstream 100 bases:

>100_bases
CTACTTGGAAGAGAAGAACCGGGGATAAAACCGGGGCTAGGGACTGGGGGCTAGGGGCTGGAACGCTCCGCCCCCTATAC
AAATAATAGAGGTGTCACCC

Downstream 100 bases:

>100_bases
CAATAAGCTGTGGCACTTCCGGTAAGGTTCTGATATAAGACGGCATGGCAGTTAGAATCCGTTAGAGGAGGGCTTCATCC
AGATGCGGACTTTTTTGAAG

Product: laccase family multicopper oxidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 264

Protein sequence:

>264_residues
MEMQKAGKIQYLKPALGAGGVVAGFTTRHEGVSRPPYNSLNLGSNTLDSSHNVEGNRSLLARSLGSTLDRFLTVSQVHGT
DLLVIDAPNPELSHFLKLECDGIVTNQPGIMIAICVADCVPILLHDPVQRVVAALHAGWQGTVANIVGKGVEAMTTLFGC
DRKDIRAALGPHISGCCYEVDQPVRDAFKKAGAAWDLAAKEQGDGKWLLDLGEANRLLLKDAGLRADQIQSSDLCVSCNQ
ELFFSYRRDGGDTGRQVGFIMLEA

Sequences:

>Translated_264_residues
MEMQKAGKIQYLKPALGAGGVVAGFTTRHEGVSRPPYNSLNLGSNTLDSSHNVEGNRSLLARSLGSTLDRFLTVSQVHGT
DLLVIDAPNPELSHFLKLECDGIVTNQPGIMIAICVADCVPILLHDPVQRVVAALHAGWQGTVANIVGKGVEAMTTLFGC
DRKDIRAALGPHISGCCYEVDQPVRDAFKKAGAAWDLAAKEQGDGKWLLDLGEANRLLLKDAGLRADQIQSSDLCVSCNQ
ELFFSYRRDGGDTGRQVGFIMLEA
>Mature_264_residues
MEMQKAGKIQYLKPALGAGGVVAGFTTRHEGVSRPPYNSLNLGSNTLDSSHNVEGNRSLLARSLGSTLDRFLTVSQVHGT
DLLVIDAPNPELSHFLKLECDGIVTNQPGIMIAICVADCVPILLHDPVQRVVAALHAGWQGTVANIVGKGVEAMTTLFGC
DRKDIRAALGPHISGCCYEVDQPVRDAFKKAGAAWDLAAKEQGDGKWLLDLGEANRLLLKDAGLRADQIQSSDLCVSCNQ
ELFFSYRRDGGDTGRQVGFIMLEA

Specific function: Unknown

COG id: COG1496

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0124 family [H]

Homologues:

Organism=Homo sapiens, GI190194374, Length=264, Percent_Identity=31.8181818181818, Blast_Score=137, Evalue=1e-32,
Organism=Homo sapiens, GI190194372, Length=264, Percent_Identity=31.8181818181818, Blast_Score=137, Evalue=1e-32,
Organism=Escherichia coli, GI1788945, Length=243, Percent_Identity=37.037037037037, Blast_Score=132, Evalue=3e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003730
- InterPro:   IPR011324 [H]

Pfam domain/function: PF02578 Cu-oxidase_4 [H]

EC number: NA

Molecular weight: Translated: 28343; Mature: 28343

Theoretical pI: Translated: 6.15; Mature: 6.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEMQKAGKIQYLKPALGAGGVVAGFTTRHEGVSRPPYNSLNLGSNTLDSSHNVEGNRSLL
CCCCCCCCEEEECCCCCCCCEEECEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
ARSLGSTLDRFLTVSQVHGTDLLVIDAPNPELSHFLKLECDGIVTNQPGIMIAICVADCV
HHHHHHHHHHHHHHEEECCCEEEEEECCCCCHHHEEEEEECEEEECCCCEEEEEEHHHHH
PILLHDPVQRVVAALHAGWQGTVANIVGKGVEAMTTLFGCDRKDIRAALGPHISGCCYEV
HHHHCCHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHCCCHHHHHHHHCCCCCCHHHHC
DQPVRDAFKKAGAAWDLAAKEQGDGKWLLDLGEANRLLLKDAGLRADQIQSSDLCVSCNQ
CHHHHHHHHHCCCCEEECCCCCCCCCEEEEECCCCEEEEECCCCCHHHCCCCCEEEECCH
ELFFSYRRDGGDTGRQVGFIMLEA
HHHHHECCCCCCCCCEEEEEEEEC
>Mature Secondary Structure
MEMQKAGKIQYLKPALGAGGVVAGFTTRHEGVSRPPYNSLNLGSNTLDSSHNVEGNRSLL
CCCCCCCCEEEECCCCCCCCEEECEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
ARSLGSTLDRFLTVSQVHGTDLLVIDAPNPELSHFLKLECDGIVTNQPGIMIAICVADCV
HHHHHHHHHHHHHHEEECCCEEEEEECCCCCHHHEEEEEECEEEECCCCEEEEEEHHHHH
PILLHDPVQRVVAALHAGWQGTVANIVGKGVEAMTTLFGCDRKDIRAALGPHISGCCYEV
HHHHCCHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHCCCHHHHHHHHCCCCCCHHHHC
DQPVRDAFKKAGAAWDLAAKEQGDGKWLLDLGEANRLLLKDAGLRADQIQSSDLCVSCNQ
CHHHHHHHHHCCCCEEECCCCCCCCCEEEEECCCCEEEEECCCCCHHHCCCCCEEEECCH
ELFFSYRRDGGDTGRQVGFIMLEA
HHHHHECCCCCCCCCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]