| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197119603
Identifier: 197119603
GI number: 197119603
Start: 3728428
End: 3728862
Strand: Direct
Name: 197119603
Synonym: Gbem_3237
Alternate gene names: NA
Gene position: 3728428-3728862 (Clockwise)
Preceding gene: 197119601
Following gene: 308535359
Centisome position: 80.79
GC content: 52.87
Gene sequence:
>435_bases ATGAAAGTAGAGATGGATAAGAAACAGATTTTGGAGTTCATTAACGCAAATCCCATTTTCCACATGGCGACCGTCGACGG CGACACCCCTCACGTGCGTGGGATGCTTTTGTTCAGGGCCGACGACGAAGGCATCGTCTTCAATACCGGCAAGATCAAGG ACCTATACCGGCAGCTGGGCGTAAACCCCAAAGTTGAAATGTGTTTCACCAACGGGATCTTCGAAAACCTGATCCAAGTG AGGGTGACCGGAATAGTCGAGGCGCTGGAGGACCTGGAACTGAAGAAGGAGATAGTGCAAAAGCGCGATTTCCTGAAGCC GTGGATAGACAAGGTGGGGTACGAGCAGTTGGCCGTGTACAGGTTGAGAAACGGCGTGGCGACCGTCTGGACCATGGCCA CCAACACCGAGCCCAAAGAGTTCATCCAGCTGTAG
Upstream 100 bases:
>100_bases GATTAGTTGTATATATTCACTTGGCAGTGCAGCAAAGATCAAGTTTCAGCGTCGCGACGAAGGAGGCCGCTGCGTTGGAA CTGCAGATAAGGAGGCAGCT
Downstream 100 bases:
>100_bases ATAAAAGAGCACTCAGGAACGAAATGGCCGCCCTGGAGCGGCCTTTTTTTTAACTACCACCCTGTTTCCCTACCTCATAC CGCAGTTCAACCATGCCGGT
Product: pyridoxamine 5'-phosphate oxidase-like FMN-binding protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 144; Mature: 144
Protein sequence:
>144_residues MKVEMDKKQILEFINANPIFHMATVDGDTPHVRGMLLFRADDEGIVFNTGKIKDLYRQLGVNPKVEMCFTNGIFENLIQV RVTGIVEALEDLELKKEIVQKRDFLKPWIDKVGYEQLAVYRLRNGVATVWTMATNTEPKEFIQL
Sequences:
>Translated_144_residues MKVEMDKKQILEFINANPIFHMATVDGDTPHVRGMLLFRADDEGIVFNTGKIKDLYRQLGVNPKVEMCFTNGIFENLIQV RVTGIVEALEDLELKKEIVQKRDFLKPWIDKVGYEQLAVYRLRNGVATVWTMATNTEPKEFIQL >Mature_144_residues MKVEMDKKQILEFINANPIFHMATVDGDTPHVRGMLLFRADDEGIVFNTGKIKDLYRQLGVNPKVEMCFTNGIFENLIQV RVTGIVEALEDLELKKEIVQKRDFLKPWIDKVGYEQLAVYRLRNGVATVWTMATNTEPKEFIQL
Specific function: Unknown
COG id: COG5015
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16631; Mature: 16631
Theoretical pI: Translated: 5.81; Mature: 5.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 4.2 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 4.2 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKVEMDKKQILEFINANPIFHMATVDGDTPHVRGMLLFRADDEGIVFNTGKIKDLYRQLG CCCCCCHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEEECCCCEEEECCHHHHHHHHHC VNPKVEMCFTNGIFENLIQVRVTGIVEALEDLELKKEIVQKRDFLKPWIDKVGYEQLAVY CCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH RLRNGVATVWTMATNTEPKEFIQL HHHCCCEEEEEEECCCCHHHHHCC >Mature Secondary Structure MKVEMDKKQILEFINANPIFHMATVDGDTPHVRGMLLFRADDEGIVFNTGKIKDLYRQLG CCCCCCHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEEECCCCEEEECCHHHHHHHHHC VNPKVEMCFTNGIFENLIQVRVTGIVEALEDLELKKEIVQKRDFLKPWIDKVGYEQLAVY CCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH RLRNGVATVWTMATNTEPKEFIQL HHHCCCEEEEEEECCCCHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA