| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
Click here to switch to the map view.
The map label for this gene is metG [H]
Identifier: 197119575
GI number: 197119575
Start: 3697211
End: 3698740
Strand: Direct
Name: metG [H]
Synonym: Gbem_3207
Alternate gene names: 197119575
Gene position: 3697211-3698740 (Clockwise)
Preceding gene: 197119574
Following gene: 197119577
Centisome position: 80.11
GC content: 62.42
Gene sequence:
>1530_bases ATGAAGCCCGCCTACTACGTCACCACCCCCATCTACTACGTAAACGACGTCCCGCACATAGGCCACGCATACACCACGCT TGCCGCGGACGTACTGGCGCGCTACAAGCGGCTCAAGGGCTTCGACGTCTTCTTCCTGACCGGCACCGACGAGCACGGAC AGAAGGTGGAGAAGGCTGCCATCGCCGCCGGCGAGACCCCGCTGGAGCTGGCCGACCGCGTCATGAAGCGTTTCCAGTCG CTTTGGGAGAAGCTGGAGATCTCCAACACCGACTTCATCAGGACCACCCAGGAGCGCCACAAGAAAGGCGTTTCGGTGCT CTTCGAGAGGGTGATGGAGAAAGGGGACATCTACCTCGGGGAGTATGAGGACTGGTACTGCACCCCGTGCGAAACCTTCT GGACCGAGACGCAGTTGATCGACTACAAGTGCCCTGACTGCAACAGGCCTACCGAGAAGCTGAAGGAGGAGTCGTACTTC TTCAGGATGAGCAAGTATCAGGACCAGCTTCTGGCCCACATAGAGGCGAACCCGGACTTCATCCAGCCCAAGAGCCGCAG AAACGAGATCATCTCCTTCGTCAAGGAAGGGCTTCGCGACCTCTCCGTCTCCCGCACCACCTTCCAGTGGGGGATCCCGG TCCCGGGCAACGACAAGCACGTGGTCTACGTCTGGTTCGATGCGCTGACGAACTACATCACCGCGCTCGGCTACCCCGAC GAGCAAGGGAACTTCGGCAAGTACTGGCCCTGCGACGTGCACCTGATCGGCAAGGACATCCTGCGTTTCCACACCGTCTA CTGGCCCACCTTCCTGATGGCGGCCGGGCTCCCGATCCCCAAGAAGGTGTTCGCCCACGGCTGGTGGACCGTCGAAGGGC AGAAGATGAGCAAGAGCCTGCAGAACGTGGTCGAGCCCAACATGCTGGTCGACAAGTACGGGGTGGACGCGGTGCGCTAC TTCCTGCTGCGCGAAGTCCCCTTCGGCCTGGACGGCGACTTCTCGCACCAGGCGCTGGTGCACAGGATCAACTCCGATCT CGCCAACGACCTCGGTAACCTCCTGAACCGTTCCACCGCGATGCTGGGGAAATACTTCGGAGGCGTTTTGCAGGCCCCCG GCGAGGAGACCGACCTGGACGCGGCCTACCGCGAGAAAACCGCGGCCATGATCGGCCAGGTGGACGGGTTCATCGAGGAC CTAGCCTTCAGCCGCGCGCTGCAGGCGATCTGGGAGGTCATCTCCGCCGGCAACAAGTACATCGACGAGACCGCCCCCTG GACCCTCGCCAAGGACCCGGAAAAAAGGGAGCGCCTGGCGACCGTCATGTACTACATGCTGGAGTCGCAGAGGGTGGTCT ACTCGCTTCTCTCCGCCTTCATGCCCAAGACCTCCGAGAAGGGGCTTTGCTGCCTGGGTTGGCCGCAGGCGCCCGACGCC GGCGACCTCGCCTGGGGTGGGCTCAAGCCCGGCACCCCCATAGCCAAGGCCGAGGCGCTCTTCCCGAGGATCGAGGAAAA AGCGGAATAG
Upstream 100 bases:
>100_bases AGCAGCAGCAGGGCGACAAGGGCAAAGGCCCGCAGGGCTCCGGCAAGCAGCGCCGCAACAGGCCCCAGGACGTTAAGGAA AGAAAAAAGGAGAAACCACA
Downstream 100 bases:
>100_bases CAAAACCAGTTCACGCAAAGACGCGAAGACGCAAAGAAAGACAAAAGGCGCTGCACAGGGTCCCCCTTGTGAAGCGCCTT TTTTGCTTTTGCAGTTCTTT
Product: methionyl-tRNA synthetase
Products: NA
Alternate protein names: Methionine--tRNA ligase; MetRS [H]
Number of amino acids: Translated: 509; Mature: 509
Protein sequence:
>509_residues MKPAYYVTTPIYYVNDVPHIGHAYTTLAADVLARYKRLKGFDVFFLTGTDEHGQKVEKAAIAAGETPLELADRVMKRFQS LWEKLEISNTDFIRTTQERHKKGVSVLFERVMEKGDIYLGEYEDWYCTPCETFWTETQLIDYKCPDCNRPTEKLKEESYF FRMSKYQDQLLAHIEANPDFIQPKSRRNEIISFVKEGLRDLSVSRTTFQWGIPVPGNDKHVVYVWFDALTNYITALGYPD EQGNFGKYWPCDVHLIGKDILRFHTVYWPTFLMAAGLPIPKKVFAHGWWTVEGQKMSKSLQNVVEPNMLVDKYGVDAVRY FLLREVPFGLDGDFSHQALVHRINSDLANDLGNLLNRSTAMLGKYFGGVLQAPGEETDLDAAYREKTAAMIGQVDGFIED LAFSRALQAIWEVISAGNKYIDETAPWTLAKDPEKRERLATVMYYMLESQRVVYSLLSAFMPKTSEKGLCCLGWPQAPDA GDLAWGGLKPGTPIAKAEALFPRIEEKAE
Sequences:
>Translated_509_residues MKPAYYVTTPIYYVNDVPHIGHAYTTLAADVLARYKRLKGFDVFFLTGTDEHGQKVEKAAIAAGETPLELADRVMKRFQS LWEKLEISNTDFIRTTQERHKKGVSVLFERVMEKGDIYLGEYEDWYCTPCETFWTETQLIDYKCPDCNRPTEKLKEESYF FRMSKYQDQLLAHIEANPDFIQPKSRRNEIISFVKEGLRDLSVSRTTFQWGIPVPGNDKHVVYVWFDALTNYITALGYPD EQGNFGKYWPCDVHLIGKDILRFHTVYWPTFLMAAGLPIPKKVFAHGWWTVEGQKMSKSLQNVVEPNMLVDKYGVDAVRY FLLREVPFGLDGDFSHQALVHRINSDLANDLGNLLNRSTAMLGKYFGGVLQAPGEETDLDAAYREKTAAMIGQVDGFIED LAFSRALQAIWEVISAGNKYIDETAPWTLAKDPEKRERLATVMYYMLESQRVVYSLLSAFMPKTSEKGLCCLGWPQAPDA GDLAWGGLKPGTPIAKAEALFPRIEEKAE >Mature_509_residues MKPAYYVTTPIYYVNDVPHIGHAYTTLAADVLARYKRLKGFDVFFLTGTDEHGQKVEKAAIAAGETPLELADRVMKRFQS LWEKLEISNTDFIRTTQERHKKGVSVLFERVMEKGDIYLGEYEDWYCTPCETFWTETQLIDYKCPDCNRPTEKLKEESYF FRMSKYQDQLLAHIEANPDFIQPKSRRNEIISFVKEGLRDLSVSRTTFQWGIPVPGNDKHVVYVWFDALTNYITALGYPD EQGNFGKYWPCDVHLIGKDILRFHTVYWPTFLMAAGLPIPKKVFAHGWWTVEGQKMSKSLQNVVEPNMLVDKYGVDAVRY FLLREVPFGLDGDFSHQALVHRINSDLANDLGNLLNRSTAMLGKYFGGVLQAPGEETDLDAAYREKTAAMIGQVDGFIED LAFSRALQAIWEVISAGNKYIDETAPWTLAKDPEKRERLATVMYYMLESQRVVYSLLSAFMPKTSEKGLCCLGWPQAPDA GDLAWGGLKPGTPIAKAEALFPRIEEKAE
Specific function: Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation [H]
COG id: COG0143
COG function: function code J; Methionyl-tRNA synthetase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 tRNA-binding domain [H]
Homologues:
Organism=Homo sapiens, GI24308436, Length=501, Percent_Identity=39.9201596806387, Blast_Score=362, Evalue=1e-100, Organism=Homo sapiens, GI14043022, Length=505, Percent_Identity=26.7326732673267, Blast_Score=162, Evalue=9e-40, Organism=Escherichia coli, GI1788432, Length=544, Percent_Identity=25.5514705882353, Blast_Score=195, Evalue=5e-51, Organism=Caenorhabditis elegans, GI212645096, Length=494, Percent_Identity=35.6275303643725, Blast_Score=302, Evalue=2e-82, Organism=Caenorhabditis elegans, GI71992781, Length=384, Percent_Identity=32.2916666666667, Blast_Score=204, Evalue=1e-52, Organism=Caenorhabditis elegans, GI17540794, Length=547, Percent_Identity=27.7879341864717, Blast_Score=174, Evalue=1e-43, Organism=Saccharomyces cerevisiae, GI6321610, Length=514, Percent_Identity=34.6303501945525, Blast_Score=295, Evalue=2e-80, Organism=Saccharomyces cerevisiae, GI6321704, Length=555, Percent_Identity=26.3063063063063, Blast_Score=152, Evalue=9e-38, Organism=Drosophila melanogaster, GI21358483, Length=494, Percent_Identity=37.246963562753, Blast_Score=324, Evalue=1e-88, Organism=Drosophila melanogaster, GI24655311, Length=554, Percent_Identity=27.4368231046931, Blast_Score=173, Evalue=3e-43,
Paralogues:
None
Copy number: 871 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001412 - InterPro: IPR015413 - InterPro: IPR004495 - InterPro: IPR014758 - InterPro: IPR012340 - InterPro: IPR016027 - InterPro: IPR014729 - InterPro: IPR002547 - InterPro: IPR009080 - InterPro: IPR013155 [H]
Pfam domain/function: PF08264 Anticodon_1; PF09334 tRNA-synt_1g; PF01588 tRNA_bind [H]
EC number: =6.1.1.10 [H]
Molecular weight: Translated: 58073; Mature: 58073
Theoretical pI: Translated: 5.68; Mature: 5.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKPAYYVTTPIYYVNDVPHIGHAYTTLAADVLARYKRLKGFDVFFLTGTDEHGQKVEKAA CCCCEEEECCEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHH IAAGETPLELADRVMKRFQSLWEKLEISNTDFIRTTQERHKKGVSVLFERVMEKGDIYLG HHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHCHHHHHHHHHHHHHHHHHHHCCEEEE EYEDWYCTPCETFWTETQLIDYKCPDCNRPTEKLKEESYFFRMSKYQDQLLAHIEANPDF CCCCCEECCCHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC IQPKSRRNEIISFVKEGLRDLSVSRTTFQWGIPVPGNDKHVVYVWFDALTNYITALGYPD CCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEEEEEEHHHHHHHHHHCCCCC EQGNFGKYWPCDVHLIGKDILRFHTVYWPTFLMAAGLPIPKKVFAHGWWTVEGQKMSKSL CCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCEEECHHHHHHHH QNVVEPNMLVDKYGVDAVRYFLLREVPFGLDGDFSHQALVHRINSDLANDLGNLLNRSTA HHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH MLGKYFGGVLQAPGEETDLDAAYREKTAAMIGQVDGFIEDLAFSRALQAIWEVISAGNKY HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC IDETAPWTLAKDPEKRERLATVMYYMLESQRVVYSLLSAFMPKTSEKGLCCLGWPQAPDA CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCC GDLAWGGLKPGTPIAKAEALFPRIEEKAE CCCCCCCCCCCCCHHHHHHHHHHHHHCCC >Mature Secondary Structure MKPAYYVTTPIYYVNDVPHIGHAYTTLAADVLARYKRLKGFDVFFLTGTDEHGQKVEKAA CCCCEEEECCEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHH IAAGETPLELADRVMKRFQSLWEKLEISNTDFIRTTQERHKKGVSVLFERVMEKGDIYLG HHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHCHHHHHHHHHHHHHHHHHHHCCEEEE EYEDWYCTPCETFWTETQLIDYKCPDCNRPTEKLKEESYFFRMSKYQDQLLAHIEANPDF CCCCCEECCCHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC IQPKSRRNEIISFVKEGLRDLSVSRTTFQWGIPVPGNDKHVVYVWFDALTNYITALGYPD CCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEEEEEEHHHHHHHHHHCCCCC EQGNFGKYWPCDVHLIGKDILRFHTVYWPTFLMAAGLPIPKKVFAHGWWTVEGQKMSKSL CCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCEEECHHHHHHHH QNVVEPNMLVDKYGVDAVRYFLLREVPFGLDGDFSHQALVHRINSDLANDLGNLLNRSTA HHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH MLGKYFGGVLQAPGEETDLDAAYREKTAAMIGQVDGFIEDLAFSRALQAIWEVISAGNKY HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC IDETAPWTLAKDPEKRERLATVMYYMLESQRVVYSLLSAFMPKTSEKGLCCLGWPQAPDA CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCC GDLAWGGLKPGTPIAKAEALFPRIEEKAE CCCCCCCCCCCCCHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11997336 [H]