| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197118180
Identifier: 197118180
GI number: 197118180
Start: 2072732
End: 2073901
Strand: Direct
Name: 197118180
Synonym: Gbem_1795
Alternate gene names: NA
Gene position: 2072732-2073901 (Clockwise)
Preceding gene: 197118179
Following gene: 197118181
Centisome position: 44.91
GC content: 59.49
Gene sequence:
>1170_bases ATGAATCTGATAGAAAAAAGCGCAAGCGGCAAGGTCGATGCGATCTACACCAAGGCGATAGCTTCCGCCTCGCAACTCGG CGGGACCCTTACCCCGCATCTCAGGAGGTTCATCCGTTTCCTCGCGCTCCCCTACTACTTCTTTTGCGGCATCGATTGGA GGATCTGCCGCAAGAACAAGCTCGCCGTGTGCCTCGACCTCCTGTACATCTTCTTCGTCCTGAAGCACTACCCCGACCAC TACTTCTACTGCCGCCTGTGGGAAAAGAAGAGGGAGGAATGGAAGTATTACTTCGGCTCGATATACGACGCGTACCAGCG GCGGCAGTTCAAGAAGTTCATCTACAGCAGGGAAAACTTCGTGCTCTTCGCCAACAAGCAGATCTGCTACCAGTTGTGCC ACGACGCCGGTTTCCCGCTTCCCGCGCAGTTCGCTACGCTCTACCCCCACGAGGACTACCGCTCCGGGCTCGCCGCTTGT GTCGCGCAAATGCCCCCCGGGGAGCGGCTCATCGTAAAGGCCGTGGACGGGATGGGAGGGAAGGGGATCGTCGTCGCCTT CCGCGACGGCGACCGGATCAAGGTCAGACGCAACGAGGAGGTCTGCGACCTCTCCGAGTTCGAGCTCAACCACCCCGCCG TGGTGCAGCAATACGTCAGGCAGCACCATCTGGTGCAGCAGTTTTCCATCACCACCAACACCATCAGGTTGTCCACGATG TTGAAGTCGGACTATTCAGGCGTGGTGCTGGTCTGCGCCATCATGAGGTTCGGTGTCGGCGGCTCCGTGGTCGATAACCT TTGTTCCGGCGGGCTTGCCGTTGGGGTCGACCTCGTCACCGGCAGGCTCGGCGAATTCGCCGTCGGTTTTGCCGCGACGC TGCACGCGCGGCACCCCGACTCCGGGATGCCGTTCAAGGACTTCCAGGTACCTTACTGGCCGGAGGTGGTCGACTTGGCC AAAAGGGTGCAGCAGCACTTCCACTACCACAAGTTACTGGGCCTCGACTTTTGCATCACGGAGGAAGGGCCGCTCTTGAT AGAGATCAACGAGGAGCAGGACCTGGGCGGAACCGAGATGGTCTACGGTCCCGTCCTGAAAAACCGGGAGGTGCTGGAGC AGTTCAAGGCCTACAACCTACTCGTCAGCAGGGTGCAGCAGACAATGTGA
Upstream 100 bases:
>100_bases CTGAAGAGCTCGAGAACCACGTGAAGCATGCACCTCAAACCGGGCGCCCTCCCGGATCTTTTGCCTGCTACGGATCTTTC CGTAGCCCGAGGTCGTTTTT
Downstream 100 bases:
>100_bases GGCAGAAGCAACGATTCATGTTATGGGAATGGAGAAGATCATGTTACGGAGACTAAAGAACGTCATCATTGCGGCAGCTC TCGTCCTGTTCGGGGTGCAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 389; Mature: 389
Protein sequence:
>389_residues MNLIEKSASGKVDAIYTKAIASASQLGGTLTPHLRRFIRFLALPYYFFCGIDWRICRKNKLAVCLDLLYIFFVLKHYPDH YFYCRLWEKKREEWKYYFGSIYDAYQRRQFKKFIYSRENFVLFANKQICYQLCHDAGFPLPAQFATLYPHEDYRSGLAAC VAQMPPGERLIVKAVDGMGGKGIVVAFRDGDRIKVRRNEEVCDLSEFELNHPAVVQQYVRQHHLVQQFSITTNTIRLSTM LKSDYSGVVLVCAIMRFGVGGSVVDNLCSGGLAVGVDLVTGRLGEFAVGFAATLHARHPDSGMPFKDFQVPYWPEVVDLA KRVQQHFHYHKLLGLDFCITEEGPLLIEINEEQDLGGTEMVYGPVLKNREVLEQFKAYNLLVSRVQQTM
Sequences:
>Translated_389_residues MNLIEKSASGKVDAIYTKAIASASQLGGTLTPHLRRFIRFLALPYYFFCGIDWRICRKNKLAVCLDLLYIFFVLKHYPDH YFYCRLWEKKREEWKYYFGSIYDAYQRRQFKKFIYSRENFVLFANKQICYQLCHDAGFPLPAQFATLYPHEDYRSGLAAC VAQMPPGERLIVKAVDGMGGKGIVVAFRDGDRIKVRRNEEVCDLSEFELNHPAVVQQYVRQHHLVQQFSITTNTIRLSTM LKSDYSGVVLVCAIMRFGVGGSVVDNLCSGGLAVGVDLVTGRLGEFAVGFAATLHARHPDSGMPFKDFQVPYWPEVVDLA KRVQQHFHYHKLLGLDFCITEEGPLLIEINEEQDLGGTEMVYGPVLKNREVLEQFKAYNLLVSRVQQTM >Mature_389_residues MNLIEKSASGKVDAIYTKAIASASQLGGTLTPHLRRFIRFLALPYYFFCGIDWRICRKNKLAVCLDLLYIFFVLKHYPDH YFYCRLWEKKREEWKYYFGSIYDAYQRRQFKKFIYSRENFVLFANKQICYQLCHDAGFPLPAQFATLYPHEDYRSGLAAC VAQMPPGERLIVKAVDGMGGKGIVVAFRDGDRIKVRRNEEVCDLSEFELNHPAVVQQYVRQHHLVQQFSITTNTIRLSTM LKSDYSGVVLVCAIMRFGVGGSVVDNLCSGGLAVGVDLVTGRLGEFAVGFAATLHARHPDSGMPFKDFQVPYWPEVVDLA KRVQQHFHYHKLLGLDFCITEEGPLLIEINEEQDLGGTEMVYGPVLKNREVLEQFKAYNLLVSRVQQTM
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44578; Mature: 44578
Theoretical pI: Translated: 8.33; Mature: 8.33
Prosite motif: PS50975 ATP_GRASP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.8 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 2.8 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNLIEKSASGKVDAIYTKAIASASQLGGTLTPHLRRFIRFLALPYYFFCGIDWRICRKNK CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCC LAVCLDLLYIFFVLKHYPDHYFYCRLWEKKREEWKYYFGSIYDAYQRRQFKKFIYSRENF HHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE VLFANKQICYQLCHDAGFPLPAQFATLYPHEDYRSGLAACVAQMPPGERLIVKAVDGMGG EEEECHHHHHHHHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCC KGIVVAFRDGDRIKVRRNEEVCDLSEFELNHPAVVQQYVRQHHLVQQFSITTNTIRLSTM CEEEEEEECCCEEEEECCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHEEEHHH LKSDYSGVVLVCAIMRFGVGGSVVDNLCSGGLAVGVDLVTGRLGEFAVGFAATLHARHPD HHCCCCCHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHEECCCCC SGMPFKDFQVPYWPEVVDLAKRVQQHFHYHKLLGLDFCITEEGPLLIEINEEQDLGGTEM CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCCCCCCCEE VYGPVLKNREVLEQFKAYNLLVSRVQQTM EECCHHCCHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MNLIEKSASGKVDAIYTKAIASASQLGGTLTPHLRRFIRFLALPYYFFCGIDWRICRKNK CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCC LAVCLDLLYIFFVLKHYPDHYFYCRLWEKKREEWKYYFGSIYDAYQRRQFKKFIYSRENF HHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE VLFANKQICYQLCHDAGFPLPAQFATLYPHEDYRSGLAACVAQMPPGERLIVKAVDGMGG EEEECHHHHHHHHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCC KGIVVAFRDGDRIKVRRNEEVCDLSEFELNHPAVVQQYVRQHHLVQQFSITTNTIRLSTM CEEEEEEECCCEEEEECCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHEEEHHH LKSDYSGVVLVCAIMRFGVGGSVVDNLCSGGLAVGVDLVTGRLGEFAVGFAATLHARHPD HHCCCCCHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHEECCCCC SGMPFKDFQVPYWPEVVDLAKRVQQHFHYHKLLGLDFCITEEGPLLIEINEEQDLGGTEM CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCCCCCCCEE VYGPVLKNREVLEQFKAYNLLVSRVQQTM EECCHHCCHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA