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The map label for this gene is rfbE [H]

Identifier: 197118176

GI number: 197118176

Start: 2067619

End: 2069133

Strand: Direct

Name: rfbE [H]

Synonym: Gbem_1791

Alternate gene names: 197118176

Gene position: 2067619-2069133 (Clockwise)

Preceding gene: 197118175

Following gene: 197118177

Centisome position: 44.8

GC content: 60.79

Gene sequence:

>1515_bases
ATGCACTTGCGCAAAGTAATAGAAAACATCCTCTCCAACTGGGTCAACCTGGTGGTGACCATCGCCATAGCCTTCGTCGT
GAGCCCGGTAGTGGTGCAGACACTGGGCAAGGAACTGTACGGCGTATGGACCCTCGTGGTGTCGGTCACCGGGTATTTCA
CCGTGCTCGATTTCGGGGTCAACACGGCGATCGTGCGCTATATCTCCAGCAGCGCCGCCCGGAACGATGACGACCGTGCG
CGCTCCGTCTACTCCACCTCGATGGCGATCTTCGGGATAACCTCCTCCGTGGTGCTCGCCTTCTCGCTGGTTTTCGGCTA
CTTCTTCCAGGATCTGTTCCAGCTCTATCACATCCCCAGGTCCTACCTTTACGCCGTATTCCTGATCTCAGCCCTGGATC
TTGCGGGGGGGCTCGTCTGCTCCGTGTTCCTCGGTGCGCTGGCAGGGCTGCAGGAATTCAAGTTCATAAACGGCACCTCC
CTCTCGATCAACATCGTCAAGAGCGTGGTCCTGGTGCTGATGCTCAAAAGCGGCTACACCCTCCTTGCCCTTGCCTTGCT
GCAACTGGTGGCGAGTGTCGCGCGGGCGCTATGCCAGTACGCCCTCCTGCGCCGGAAGTACGGGCATCTCCGCTTCGACC
GGCAGGCGGTGAACCGGGACACGGTGAAGCTCATCTACAACTACAGCGTGTACAGCTTCGTCATCGCCGTCGCCCTAAAG
CTCCTTTTCTACACCGACTCGGTGGTGATAGGCGCCCTGATCGGGGTCTCCCAGGTCGCCTTCTACGCCATTCCTTCGTC
CTTGCTGGACTACCTAGAGAAGTTCGTCTGGGCCATAATCTCGGTGCTGATACCGATGATCAGCGCCAACGAGGCTACCG
GGGCGGGGGGCGCCAACGAGAGGCTCTACGTCACCGGCACCCGCTATACGCTTCTTCTCAGCATGCCGGTGGTGATCTCG
CTCTACTGCTACGGGGGGGATTTCATCACCCTCTGGATGGGCCCGGAGTTCGGCGAGCGCTCCCTTTGGGTATTGAGGCT
CCTGCTGATCGGTTTCGGCTTCTCCTTCTCGCAGCTGATAGCCCACGGGATCCTGAAGGGGATCAGCAGGCATCGGGTGC
TGGCTTACATTCTGGCCTTCGAGGCACTAGCCAATTTCGGGATGAGCGTCGCGCTCGCCAAGCCCTACGGCATCGAGGGA
GTCGCCGTGGGGACGTTGGTCCCCTTGGTGCTGGCGTCGGCCTGCATCGTCTGCTACAGCTGCCGCCTGCTCAACATCGG
CATCTGGCGCTACCTCGCCAGGGCCTATAGCGCGGCGCTCGCCGGGACCCTGGCCGCGCTCCTCTTCATCGCCTGGAACC
CGTACCGGATTACCGGCTTTTTTTCGCTTTTCGCCACCTGTGCCGTGGTTGCCGCCGTTTTCCTGGCGGTCGCTTTCCCG
GCGTCCTTGGAAAGGGAGCACAGGGATCTTTTGCTCAAGAAGCTTTTCGGCAGGGCGGCCGTTTCGGGGAGCTGA

Upstream 100 bases:

>100_bases
CCGAGTTCGGCAGGGAGGCGATGGCCGTCGCCAGGAGCAAATTCTCCTTTGCCGCGAGGAACCGCGCCATGCAGCAAATC
TACCGTGAGGCGCTGGGCTG

Downstream 100 bases:

>100_bases
CCCGGAGGCCCGATCAAACGCCCCACCGGGGCGTACACGGAGTAAGCAGTGCAAAACGTCTTGTTTTATTACTCGTCCCA
GCAGGTGCACACCGGCTCGC

Product: polysaccharide biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 504; Mature: 504

Protein sequence:

>504_residues
MHLRKVIENILSNWVNLVVTIAIAFVVSPVVVQTLGKELYGVWTLVVSVTGYFTVLDFGVNTAIVRYISSSAARNDDDRA
RSVYSTSMAIFGITSSVVLAFSLVFGYFFQDLFQLYHIPRSYLYAVFLISALDLAGGLVCSVFLGALAGLQEFKFINGTS
LSINIVKSVVLVLMLKSGYTLLALALLQLVASVARALCQYALLRRKYGHLRFDRQAVNRDTVKLIYNYSVYSFVIAVALK
LLFYTDSVVIGALIGVSQVAFYAIPSSLLDYLEKFVWAIISVLIPMISANEATGAGGANERLYVTGTRYTLLLSMPVVIS
LYCYGGDFITLWMGPEFGERSLWVLRLLLIGFGFSFSQLIAHGILKGISRHRVLAYILAFEALANFGMSVALAKPYGIEG
VAVGTLVPLVLASACIVCYSCRLLNIGIWRYLARAYSAALAGTLAALLFIAWNPYRITGFFSLFATCAVVAAVFLAVAFP
ASLEREHRDLLLKKLFGRAAVSGS

Sequences:

>Translated_504_residues
MHLRKVIENILSNWVNLVVTIAIAFVVSPVVVQTLGKELYGVWTLVVSVTGYFTVLDFGVNTAIVRYISSSAARNDDDRA
RSVYSTSMAIFGITSSVVLAFSLVFGYFFQDLFQLYHIPRSYLYAVFLISALDLAGGLVCSVFLGALAGLQEFKFINGTS
LSINIVKSVVLVLMLKSGYTLLALALLQLVASVARALCQYALLRRKYGHLRFDRQAVNRDTVKLIYNYSVYSFVIAVALK
LLFYTDSVVIGALIGVSQVAFYAIPSSLLDYLEKFVWAIISVLIPMISANEATGAGGANERLYVTGTRYTLLLSMPVVIS
LYCYGGDFITLWMGPEFGERSLWVLRLLLIGFGFSFSQLIAHGILKGISRHRVLAYILAFEALANFGMSVALAKPYGIEG
VAVGTLVPLVLASACIVCYSCRLLNIGIWRYLARAYSAALAGTLAALLFIAWNPYRITGFFSLFATCAVVAAVFLAVAFP
ASLEREHRDLLLKKLFGRAAVSGS
>Mature_504_residues
MHLRKVIENILSNWVNLVVTIAIAFVVSPVVVQTLGKELYGVWTLVVSVTGYFTVLDFGVNTAIVRYISSSAARNDDDRA
RSVYSTSMAIFGITSSVVLAFSLVFGYFFQDLFQLYHIPRSYLYAVFLISALDLAGGLVCSVFLGALAGLQEFKFINGTS
LSINIVKSVVLVLMLKSGYTLLALALLQLVASVARALCQYALLRRKYGHLRFDRQAVNRDTVKLIYNYSVYSFVIAVALK
LLFYTDSVVIGALIGVSQVAFYAIPSSLLDYLEKFVWAIISVLIPMISANEATGAGGANERLYVTGTRYTLLLSMPVVIS
LYCYGGDFITLWMGPEFGERSLWVLRLLLIGFGFSFSQLIAHGILKGISRHRVLAYILAFEALANFGMSVALAKPYGIEG
VAVGTLVPLVLASACIVCYSCRLLNIGIWRYLARAYSAALAGTLAALLFIAWNPYRITGFFSLFATCAVVAAVFLAVAFP
ASLEREHRDLLLKKLFGRAAVSGS

Specific function: Could be an O-antigen transporter [H]

COG id: COG2244

COG function: function code R; Membrane protein involved in the export of O-antigen and teichoic acid

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide synthase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002797 [H]

Pfam domain/function: PF01943 Polysacc_synt [H]

EC number: NA

Molecular weight: Translated: 55122; Mature: 55122

Theoretical pI: Translated: 9.55; Mature: 9.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHLRKVIENILSNWVNLVVTIAIAFVVSPVVVQTLGKELYGVWTLVVSVTGYFTVLDFGV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
NTAIVRYISSSAARNDDDRARSVYSTSMAIFGITSSVVLAFSLVFGYFFQDLFQLYHIPR
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
SYLYAVFLISALDLAGGLVCSVFLGALAGLQEFKFINGTSLSINIVKSVVLVLMLKSGYT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHCCHH
LLALALLQLVASVARALCQYALLRRKYGHLRFDRQAVNRDTVKLIYNYSVYSFVIAVALK
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHEEHHHHHHHHHHHHHH
LLFYTDSVVIGALIGVSQVAFYAIPSSLLDYLEKFVWAIISVLIPMISANEATGAGGANE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
RLYVTGTRYTLLLSMPVVISLYCYGGDFITLWMGPEFGERSLWVLRLLLIGFGFSFSQLI
EEEEEECHHHHHHHHHHHHHHHEECCCEEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHH
AHGILKGISRHRVLAYILAFEALANFGMSVALAKPYGIEGVAVGTLVPLVLASACIVCYS
HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH
CRLLNIGIWRYLARAYSAALAGTLAALLFIAWNPYRITGFFSLFATCAVVAAVFLAVAFP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
ASLEREHRDLLLKKLFGRAAVSGS
HHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MHLRKVIENILSNWVNLVVTIAIAFVVSPVVVQTLGKELYGVWTLVVSVTGYFTVLDFGV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
NTAIVRYISSSAARNDDDRARSVYSTSMAIFGITSSVVLAFSLVFGYFFQDLFQLYHIPR
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
SYLYAVFLISALDLAGGLVCSVFLGALAGLQEFKFINGTSLSINIVKSVVLVLMLKSGYT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHCCHH
LLALALLQLVASVARALCQYALLRRKYGHLRFDRQAVNRDTVKLIYNYSVYSFVIAVALK
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHEEHHHHHHHHHHHHHH
LLFYTDSVVIGALIGVSQVAFYAIPSSLLDYLEKFVWAIISVLIPMISANEATGAGGANE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
RLYVTGTRYTLLLSMPVVISLYCYGGDFITLWMGPEFGERSLWVLRLLLIGFGFSFSQLI
EEEEEECHHHHHHHHHHHHHHHEECCCEEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHH
AHGILKGISRHRVLAYILAFEALANFGMSVALAKPYGIEGVAVGTLVPLVLASACIVCYS
HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH
CRLLNIGIWRYLARAYSAALAGTLAALLFIAWNPYRITGFFSLFATCAVVAAVFLAVAFP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
ASLEREHRDLLLKKLFGRAAVSGS
HHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7507920; 12384590; 12704152 [H]