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The map label for this gene is lpsB [H]

Identifier: 197118177

GI number: 197118177

Start: 2069182

End: 2070279

Strand: Direct

Name: lpsB [H]

Synonym: Gbem_1792

Alternate gene names: 197118177

Gene position: 2069182-2070279 (Clockwise)

Preceding gene: 197118176

Following gene: 197118178

Centisome position: 44.83

GC content: 63.11

Gene sequence:

>1098_bases
GTGCAAAACGTCTTGTTTTATTACTCGTCCCAGCAGGTGCACACCGGCTCGCCCAAGGTGCTGGCGCGCCTCATCGAGGG
GCTGGACCGTACCCTTTACGTGCCTTATTTCATCGCCGGGCGTCCCGGCGACCTGTCGCGCAGGCTCGCTGCAAACGGAA
CCGTGATCCTTGAAGGGGAGGTGGGGCAGGTTTCCGCCACTACCCTCTTGAACAACACGGCGAACCTTTTCCGGCTGACG
AGGCTTTTAAAGCGCAACAAGATCTCTCTGGTGCACATAAACCAGCTGGGGTGGAACCTCGATCTCGCCGTCGCAGCGAG
GCTCCTCTCCATCCCGGTCGTGTTCCACATCCACAACCACGAGCAGATCAACCTGCGCAACCTCGACTGCCGGCTGGGAT
CGCGCTACCTGTTCGTTTCCCGGGCGCTCGCCGAGCAGTGCGACGCCTACCGTTTCCACCCGGTGAAGACGCAGGTGCTC
TACAACCCCATCGACATCGACAGGTTCCGCGCCGGGCGCCCAATCCGGCAGGAGCTGAACCTCCCTCAAAATGCACCGGT
GGTGGGGACCGTGGCCCAGATCTGCCACCGGAAGGGGATCGACATCATCGTCAACTGCGCGCAGAAGGTGCTCTCCTCGG
TACCCGAGGCGGTATTCGTCATCGCCGGACCGGACGGGCTCGGGGAGGAGCGCTTCGCGCAGGAGCTCCGCGCGGAGATT
GCCGGCAATGGACTCTCGGAAAAAATCCGCCTCGTCGGCCCGCGCGACGACATCGAGGACTTCATGGCCAGCCTGGACCT
CTTCTTTCTCCCCACCCGTGCGGAGCCGTTCGGCATGGTCTTTGTGGAGGCCATGGCGGCGGGGGTCCCCGTCGTGGCCA
GCAACGTCGGGGGGATCCCCGAGATCATACCTGCGGAGGAGTTCGGCATCCTCTTGGACTCGGAATCCCCGCGTTATCCG
GAAGTTATCGCGGGGCTCCTGGTCGACGCCGACCGGAGAAGGCGCATGGCGGCAGCTGCCTTCGAGCGCGCGCGGGACAA
CTTTTCACACTCGATCTTCAACCGGAAGATCGGGTCGCTCTACCGTGAACTGATCTGA

Upstream 100 bases:

>100_bases
GGATCTTTTGCTCAAGAAGCTTTTCGGCAGGGCGGCCGTTTCGGGGAGCTGACCCGGAGGCCCGATCAAACGCCCCACCG
GGGCGTACACGGAGTAAGCA

Downstream 100 bases:

>100_bases
TCCAGCGACCGGGGGACTAAGCCGCTGCACCGTAGGCGGATAGGGTGGGCCGCCGAGAGGTCATATGAGGAACGAGATCG
CGAAAAACCTGCTGTTTTAC

Product: glycosyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 365; Mature: 365

Protein sequence:

>365_residues
MQNVLFYYSSQQVHTGSPKVLARLIEGLDRTLYVPYFIAGRPGDLSRRLAANGTVILEGEVGQVSATTLLNNTANLFRLT
RLLKRNKISLVHINQLGWNLDLAVAARLLSIPVVFHIHNHEQINLRNLDCRLGSRYLFVSRALAEQCDAYRFHPVKTQVL
YNPIDIDRFRAGRPIRQELNLPQNAPVVGTVAQICHRKGIDIIVNCAQKVLSSVPEAVFVIAGPDGLGEERFAQELRAEI
AGNGLSEKIRLVGPRDDIEDFMASLDLFFLPTRAEPFGMVFVEAMAAGVPVVASNVGGIPEIIPAEEFGILLDSESPRYP
EVIAGLLVDADRRRRMAAAAFERARDNFSHSIFNRKIGSLYRELI

Sequences:

>Translated_365_residues
MQNVLFYYSSQQVHTGSPKVLARLIEGLDRTLYVPYFIAGRPGDLSRRLAANGTVILEGEVGQVSATTLLNNTANLFRLT
RLLKRNKISLVHINQLGWNLDLAVAARLLSIPVVFHIHNHEQINLRNLDCRLGSRYLFVSRALAEQCDAYRFHPVKTQVL
YNPIDIDRFRAGRPIRQELNLPQNAPVVGTVAQICHRKGIDIIVNCAQKVLSSVPEAVFVIAGPDGLGEERFAQELRAEI
AGNGLSEKIRLVGPRDDIEDFMASLDLFFLPTRAEPFGMVFVEAMAAGVPVVASNVGGIPEIIPAEEFGILLDSESPRYP
EVIAGLLVDADRRRRMAAAAFERARDNFSHSIFNRKIGSLYRELI
>Mature_365_residues
MQNVLFYYSSQQVHTGSPKVLARLIEGLDRTLYVPYFIAGRPGDLSRRLAANGTVILEGEVGQVSATTLLNNTANLFRLT
RLLKRNKISLVHINQLGWNLDLAVAARLLSIPVVFHIHNHEQINLRNLDCRLGSRYLFVSRALAEQCDAYRFHPVKTQVL
YNPIDIDRFRAGRPIRQELNLPQNAPVVGTVAQICHRKGIDIIVNCAQKVLSSVPEAVFVIAGPDGLGEERFAQELRAEI
AGNGLSEKIRLVGPRDDIEDFMASLDLFFLPTRAEPFGMVFVEAMAAGVPVVASNVGGIPEIIPAEEFGILLDSESPRYP
EVIAGLLVDADRRRRMAAAAFERARDNFSHSIFNRKIGSLYRELI

Specific function: Acts at transfer of mannose group to a 3-deoxy-D-mono octulonic acid (KDO) via an alpha-1,5 linkage [H]

COG id: COG0438

COG function: function code M; Glycosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 1 family [H]

Homologues:

Organism=Caenorhabditis elegans, GI17532709, Length=187, Percent_Identity=27.807486631016, Blast_Score=67, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001296 [H]

Pfam domain/function: PF00534 Glycos_transf_1 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 40604; Mature: 40604

Theoretical pI: Translated: 8.32; Mature: 8.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNVLFYYSSQQVHTGSPKVLARLIEGLDRTLYVPYFIAGRPGDLSRRLAANGTVILEGE
CCCEEEEEECCEEECCCHHHHHHHHHCCCCEEEEEEEEECCCCCHHHHHHCCCEEEEECC
VGQVSATTLLNNTANLFRLTRLLKRNKISLVHINQLGWNLDLAVAARLLSIPVVFHIHNH
CCCEEHHHHHHCHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHCCEEEEECCC
EQINLRNLDCRLGSRYLFVSRALAEQCDAYRFHPVKTQVLYNPIDIDRFRAGRPIRQELN
CEEEEEECCCCCCCCHHHHHHHHHHHCCCCEECCEEHEEEECCCCHHHHCCCCCHHHHCC
LPQNAPVVGTVAQICHRKGIDIIVNCAQKVLSSVPEAVFVIAGPDGLGEERFAQELRAEI
CCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHH
AGNGLSEKIRLVGPRDDIEDFMASLDLFFLPTRAEPFGMVFVEAMAAGVPVVASNVGGIP
HCCCCCCCEEEECCCCHHHHHHHHCCEEEEECCCCCHHHHHHHHHHCCCCEEECCCCCCC
EIIPAEEFGILLDSESPRYPEVIAGLLVDADRRRRMAAAAFERARDNFSHSIFNRKIGSL
CCCCHHHCCEEECCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YRELI
HHHHC
>Mature Secondary Structure
MQNVLFYYSSQQVHTGSPKVLARLIEGLDRTLYVPYFIAGRPGDLSRRLAANGTVILEGE
CCCEEEEEECCEEECCCHHHHHHHHHCCCCEEEEEEEEECCCCCHHHHHHCCCEEEEECC
VGQVSATTLLNNTANLFRLTRLLKRNKISLVHINQLGWNLDLAVAARLLSIPVVFHIHNH
CCCEEHHHHHHCHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHCCEEEEECCC
EQINLRNLDCRLGSRYLFVSRALAEQCDAYRFHPVKTQVLYNPIDIDRFRAGRPIRQELN
CEEEEEECCCCCCCCHHHHHHHHHHHCCCCEECCEEHEEEECCCCHHHHCCCCCHHHHCC
LPQNAPVVGTVAQICHRKGIDIIVNCAQKVLSSVPEAVFVIAGPDGLGEERFAQELRAEI
CCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHH
AGNGLSEKIRLVGPRDDIEDFMASLDLFFLPTRAEPFGMVFVEAMAAGVPVVASNVGGIP
HCCCCCCCEEEECCCCHHHHHHHHCCEEEEECCCCCHHHHHHHHHHCCCCEEECCCCCCC
EIIPAEEFGILLDSESPRYPEVIAGLLVDADRRRRMAAAAFERARDNFSHSIFNRKIGSL
CCCCHHHCCEEECCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YRELI
HHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11157937; 11481430 [H]