| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197117280
Identifier: 197117280
GI number: 197117280
Start: 1042947
End: 1045445
Strand: Reverse
Name: 197117280
Synonym: Gbem_0890
Alternate gene names: NA
Gene position: 1045445-1042947 (Counterclockwise)
Preceding gene: 197117281
Following gene: 197117279
Centisome position: 22.65
GC content: 69.19
Gene sequence:
>2499_bases ATGACAAGGCAGACGCAACGTGTGCTTTGCTGCATCATCCTGCTCCTGGCGCTCGCCGGGTGCGGTTACGACGGCGCGGT CTCCCAGGAGGCGAGCCCCAACACCGCCCTCTTCGACCCCGCCAGCGGCACTATCCCGCTCCCCAACGTCCTCGCCACCG CGAACGCCAAGGACCCCCTCACCCAGTACACGGACCCCGTTACCGGCAACGTCGGGCTACGCCCCCCCAACACGCCCATG AGCCCGCTGGAGGCGCTGGCCTACGTCAACATCTACGAGGTCGGCGGCAGCGGCGCCGTCGCCGGCGTCAACGCCCCGAT CTACATCCGGTTCGCCAGCCCCCTGGTCCCAGCCAGCGTCACCGGCGACAACATCAAGGTGTTCCGGATCCAAGCCGACA CCCCCGCACCCGATGCGACGGAGAACCAGCCGCTGCGCTTCGCCGATGTCACCGGCAACTTCAGCTTCAGCTACACCCCC GGCAGCAGCGACGTCTCTTTATTCCCGAGGTTTCCACTGCTTCCGGCCACCCGCTACCTCTACCTGGTTTCCGACCGGGT GCGGGACGCCTCGACCGGCGGCGCGGTGAGCAGTTCGGTCTACTTCGCAGCCCTCAAGTCCCCGCTCCCGCTGGCAGGGC CGTTCCAGCCGCTGGAGGCAATCCGCGCCAACCGCACCGACCAGGCCGGCAACGTCGTCTTCTCCGGATACCGGAAGGTC CTCGACGATCTCACCGCCGCCCCGGCTCAAACCAGCGTGTCGAGCCGGGACCAGGTCGCGCTGATCGGGCGCTTCAATAC CACCGCCGCGCAGTTCATAGCCACGGACCCGGCGGCGCCGGTGGCAAGTATCGTCCCGGTGGAGAGCGCCTTGCGCGCCT TCGCCGCGGGGAGCGGGGTGCCCGGGGGGCTTCCCGGCAAGAACTGGATCGGCGCCGGCCTCAACTCGGTCACCGTAACC ACCCCAGCCGGCCTTACCCCGCAGGGTTACTGGTCAGCTGTGCTTGCGGGGACAGGTCTCAGCGCCTCCCCACCGGCGAG CGTCGGCGCCGTCGCGACCGGCAGCTTCACCAGCGCCGATATCTCGGTGAGCCCTACGGTCGCGCGCGGGAGTACTACCA TGAATCTCAACCTCCCCTTCGGGCGCTACAGCGCGGCCAGCGCCGTGCTGCAGCCGTTCAGAGATCCGGCGACGCACAGG CTCACCGGCTTCTACCACTCCGAGCGCCAGATCCCCTTCGTGTACCTCGCACCGGCCGGCGCTCCCCCTGCAGGGGGATG GCCGCTCGCCATCTACCAGCCCAGCATCAACCGCCCCAAGGAGGACGTCATCGCCCTGGCCGGGAGTCTCACTGGGGCGG GTTTCGCTGTGGTCGCCATCGACCTCCCGCTGCATGGCGCACTCGCCCTCCCGGGGCACACGACCGGCACCGCATGGGGG GAGGACTTCATAGCGCTCGGCGCGCCGCTTGCCACCCGCACCAACATACAGCAGGCGGCCTTGAACCTGCACCGGTTAGA ACTGGTGGCGGCCCCCCCCTCCTTCGACCCGGCGCTCGCCTCGCAGGGGTTCGCGGCGCTCGGGGCCAACGCCCCCAACC CGCTCGTGAAACCTAAGTTCGTCGGCATGAGCCTGGGCGCCATCGTCGGCGCCTACTTCCTCGCCGGGAACACCACCTTG TCGGCAGCGCCGGGTACCCCTCCCTACACGCAGGCAACGCTCGACGCCGACATGAAAGGGCTCCTGAACGTCCCCGGCGG CCGCGTCGCCTACCTCTTGAGGGACAGCCCCGACTTCGGCCCGGGAATCGTCGCCGGGCTCGCGGCTCACGGCATCGAGC CGGGGACGCCGCTCTACCACCAGTTCTTCCAGCTCACCCAGTCGGTTGTCGACCCGGCCGACCCGGCCACCATGACCACG CCGCTTCCCAACCTAGCGAACGGGACTCCGCTGCCGTCGCGCCTCTCCGGAAGGGTCCTGATGCAGGAGGCGACCAGCAC GAGCTTCGACGCCTCAGGCCGCCCTACTAACGGCGACATAGTCATCCCCAACTCCAGCACGCGCTATCTCGGCAACGCGC TTGGGGGGCGCGAGGTGCTGGGAACCCCGGAGGCGCGGGCGACGGCACCGGGCTTCGACCAGTTGAGCTACCTCTCCGGG CGGGTCCCCGCCCCCTTCATGATGACCCTCGCCGGCGGCCTGCCGGTCCCCAAGGTGGCGCCCGCCGCCGGGAGCGCGAC GGCGACCGCCCCCCGCGAAGGGTACTTCCAGTTCGACCAGCCGGACGCCAAGCACGGCTCCTTCATCGACCTCGCCGGCT CGCCGGAAACGCTCAGGCTCATGCAGAGGCAGATGGTGTATTTCGTCCTGAACGGGATTGCCGTCGACCCGACCGTGGTC TCGCCTGCCCTCCCCAAGGTCCCGGTCGGGACCGGAGGGAGGATAGAGTACCGCATCACCCCGCCCCGTACCATGAAGGT GTTCGGCTCTCCCAAGTAG
Upstream 100 bases:
>100_bases ATGGCTGCGCTGCGCGGGTCCAACGGCACCTTCAAAAGCGACGCCTACCTGCTGGCGGCGAACCTTAACTTCAAGTTCTG ACGCCAGACGAGGAGGTCAT
Downstream 100 bases:
>100_bases ACGGAGAGCTCCGCCTCCCGCCGCAGTTCATGAAAGCCCCCCTCCGCCCGGCAGGGGGGCTTTTCTGCTCCAGGGGCGCG CTTGGCTTCAATTCCCTCTC
Product: lipoprotein
Products: NA
Alternate protein names: Alpha/Beta Hydrolase Superfamily Protein
Number of amino acids: Translated: 832; Mature: 831
Protein sequence:
>832_residues MTRQTQRVLCCIILLLALAGCGYDGAVSQEASPNTALFDPASGTIPLPNVLATANAKDPLTQYTDPVTGNVGLRPPNTPM SPLEALAYVNIYEVGGSGAVAGVNAPIYIRFASPLVPASVTGDNIKVFRIQADTPAPDATENQPLRFADVTGNFSFSYTP GSSDVSLFPRFPLLPATRYLYLVSDRVRDASTGGAVSSSVYFAALKSPLPLAGPFQPLEAIRANRTDQAGNVVFSGYRKV LDDLTAAPAQTSVSSRDQVALIGRFNTTAAQFIATDPAAPVASIVPVESALRAFAAGSGVPGGLPGKNWIGAGLNSVTVT TPAGLTPQGYWSAVLAGTGLSASPPASVGAVATGSFTSADISVSPTVARGSTTMNLNLPFGRYSAASAVLQPFRDPATHR LTGFYHSERQIPFVYLAPAGAPPAGGWPLAIYQPSINRPKEDVIALAGSLTGAGFAVVAIDLPLHGALALPGHTTGTAWG EDFIALGAPLATRTNIQQAALNLHRLELVAAPPSFDPALASQGFAALGANAPNPLVKPKFVGMSLGAIVGAYFLAGNTTL SAAPGTPPYTQATLDADMKGLLNVPGGRVAYLLRDSPDFGPGIVAGLAAHGIEPGTPLYHQFFQLTQSVVDPADPATMTT PLPNLANGTPLPSRLSGRVLMQEATSTSFDASGRPTNGDIVIPNSSTRYLGNALGGREVLGTPEARATAPGFDQLSYLSG RVPAPFMMTLAGGLPVPKVAPAAGSATATAPREGYFQFDQPDAKHGSFIDLAGSPETLRLMQRQMVYFVLNGIAVDPTVV SPALPKVPVGTGGRIEYRITPPRTMKVFGSPK
Sequences:
>Translated_832_residues MTRQTQRVLCCIILLLALAGCGYDGAVSQEASPNTALFDPASGTIPLPNVLATANAKDPLTQYTDPVTGNVGLRPPNTPM SPLEALAYVNIYEVGGSGAVAGVNAPIYIRFASPLVPASVTGDNIKVFRIQADTPAPDATENQPLRFADVTGNFSFSYTP GSSDVSLFPRFPLLPATRYLYLVSDRVRDASTGGAVSSSVYFAALKSPLPLAGPFQPLEAIRANRTDQAGNVVFSGYRKV LDDLTAAPAQTSVSSRDQVALIGRFNTTAAQFIATDPAAPVASIVPVESALRAFAAGSGVPGGLPGKNWIGAGLNSVTVT TPAGLTPQGYWSAVLAGTGLSASPPASVGAVATGSFTSADISVSPTVARGSTTMNLNLPFGRYSAASAVLQPFRDPATHR LTGFYHSERQIPFVYLAPAGAPPAGGWPLAIYQPSINRPKEDVIALAGSLTGAGFAVVAIDLPLHGALALPGHTTGTAWG EDFIALGAPLATRTNIQQAALNLHRLELVAAPPSFDPALASQGFAALGANAPNPLVKPKFVGMSLGAIVGAYFLAGNTTL SAAPGTPPYTQATLDADMKGLLNVPGGRVAYLLRDSPDFGPGIVAGLAAHGIEPGTPLYHQFFQLTQSVVDPADPATMTT PLPNLANGTPLPSRLSGRVLMQEATSTSFDASGRPTNGDIVIPNSSTRYLGNALGGREVLGTPEARATAPGFDQLSYLSG RVPAPFMMTLAGGLPVPKVAPAAGSATATAPREGYFQFDQPDAKHGSFIDLAGSPETLRLMQRQMVYFVLNGIAVDPTVV SPALPKVPVGTGGRIEYRITPPRTMKVFGSPK >Mature_831_residues TRQTQRVLCCIILLLALAGCGYDGAVSQEASPNTALFDPASGTIPLPNVLATANAKDPLTQYTDPVTGNVGLRPPNTPMS PLEALAYVNIYEVGGSGAVAGVNAPIYIRFASPLVPASVTGDNIKVFRIQADTPAPDATENQPLRFADVTGNFSFSYTPG SSDVSLFPRFPLLPATRYLYLVSDRVRDASTGGAVSSSVYFAALKSPLPLAGPFQPLEAIRANRTDQAGNVVFSGYRKVL DDLTAAPAQTSVSSRDQVALIGRFNTTAAQFIATDPAAPVASIVPVESALRAFAAGSGVPGGLPGKNWIGAGLNSVTVTT PAGLTPQGYWSAVLAGTGLSASPPASVGAVATGSFTSADISVSPTVARGSTTMNLNLPFGRYSAASAVLQPFRDPATHRL TGFYHSERQIPFVYLAPAGAPPAGGWPLAIYQPSINRPKEDVIALAGSLTGAGFAVVAIDLPLHGALALPGHTTGTAWGE DFIALGAPLATRTNIQQAALNLHRLELVAAPPSFDPALASQGFAALGANAPNPLVKPKFVGMSLGAIVGAYFLAGNTTLS AAPGTPPYTQATLDADMKGLLNVPGGRVAYLLRDSPDFGPGIVAGLAAHGIEPGTPLYHQFFQLTQSVVDPADPATMTTP LPNLANGTPLPSRLSGRVLMQEATSTSFDASGRPTNGDIVIPNSSTRYLGNALGGREVLGTPEARATAPGFDQLSYLSGR VPAPFMMTLAGGLPVPKVAPAAGSATATAPREGYFQFDQPDAKHGSFIDLAGSPETLRLMQRQMVYFVLNGIAVDPTVVS PALPKVPVGTGGRIEYRITPPRTMKVFGSPK
Specific function: Unknown
COG id: COG1073
COG function: function code R; Hydrolases of the alpha/beta superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 85883; Mature: 85752
Theoretical pI: Translated: 8.04; Mature: 8.04
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRQTQRVLCCIILLLALAGCGYDGAVSQEASPNTALFDPASGTIPLPNVLATANAKDPL CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCEEECCCCCCH TQYTDPVTGNVGLRPPNTPMSPLEALAYVNIYEVGGSGAVAGVNAPIYIRFASPLVPASV HHCCCCCCCCCCCCCCCCCCCHHHHHHEEEEEEECCCCEEEECCCCEEEEECCCCCCCEE TGDNIKVFRIQADTPAPDATENQPLRFADVTGNFSFSYTPGSSDVSLFPRFPLLPATRYL CCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCEEEEECCCCCCCEECCCCCCCCCCEEE YLVSDRVRDASTGGAVSSSVYFAALKSPLPLAGPFQPLEAIRANRTDQAGNVVFSGYRKV EEEEHHHCCCCCCCCHHHHEEEEECCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHH LDDLTAAPAQTSVSSRDQVALIGRFNTTAAQFIATDPAAPVASIVPVESALRAFAAGSGV HHHHHCCCCCCCCCCCCCEEEEEECCCCHHHEEECCCCCCHHHHHHHHHHHHHHHCCCCC PGGLPGKNWIGAGLNSVTVTTPAGLTPQGYWSAVLAGTGLSASPPASVGAVATGSFTSAD CCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCC ISVSPTVARGSTTMNLNLPFGRYSAASAVLQPFRDPATHRLTGFYHSERQIPFVYLAPAG EEECCEEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCEEEEECCC APPAGGWPLAIYQPSINRPKEDVIALAGSLTGAGFAVVAIDLPLHGALALPGHTTGTAWG CCCCCCCEEEEECCCCCCCHHHHHHHHCCCCCCCEEEEEEECCCCCEEECCCCCCCCCCC EDFIALGAPLATRTNIQQAALNLHRLELVAAPPSFDPALASQGFAALGANAPNPLVKPKF CCHHHHCCCCHHHCCHHHHHHCEEEEEEEECCCCCCHHHHHCCCEEECCCCCCCCCCCEE VGMSLGAIVGAYFLAGNTTLSAAPGTPPYTQATLDADMKGLLNVPGGRVAYLLRDSPDFG CCCHHHHHHHHHHHCCCCEEECCCCCCCCCEEECCCCCHHHEECCCCEEEEEEECCCCCC PGIVAGLAAHGIEPGTPLYHQFFQLTQSVVDPADPATMTTPLPNLANGTPLPSRLSGRVL CHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCHHHCCCEE MQEATSTSFDASGRPTNGDIVIPNSSTRYLGNALGGREVLGTPEARATAPGFDQLSYLSG EEECCCCCCCCCCCCCCCCEEECCCCCHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCC RVPAPFMMTLAGGLPVPKVAPAAGSATATAPREGYFQFDQPDAKHGSFIDLAGSPETLRL CCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCEEEECCCCHHHHH MQRQMVYFVLNGIAVDPTVVSPALPKVPVGTGGRIEYRITPPRTMKVFGSPK HHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCCEEEEEECCCCEEEECCCCC >Mature Secondary Structure TRQTQRVLCCIILLLALAGCGYDGAVSQEASPNTALFDPASGTIPLPNVLATANAKDPL CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCEEECCCCCCH TQYTDPVTGNVGLRPPNTPMSPLEALAYVNIYEVGGSGAVAGVNAPIYIRFASPLVPASV HHCCCCCCCCCCCCCCCCCCCHHHHHHEEEEEEECCCCEEEECCCCEEEEECCCCCCCEE TGDNIKVFRIQADTPAPDATENQPLRFADVTGNFSFSYTPGSSDVSLFPRFPLLPATRYL CCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCEEEEECCCCCCCEECCCCCCCCCCEEE YLVSDRVRDASTGGAVSSSVYFAALKSPLPLAGPFQPLEAIRANRTDQAGNVVFSGYRKV EEEEHHHCCCCCCCCHHHHEEEEECCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHH LDDLTAAPAQTSVSSRDQVALIGRFNTTAAQFIATDPAAPVASIVPVESALRAFAAGSGV HHHHHCCCCCCCCCCCCCEEEEEECCCCHHHEEECCCCCCHHHHHHHHHHHHHHHCCCCC PGGLPGKNWIGAGLNSVTVTTPAGLTPQGYWSAVLAGTGLSASPPASVGAVATGSFTSAD CCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCC ISVSPTVARGSTTMNLNLPFGRYSAASAVLQPFRDPATHRLTGFYHSERQIPFVYLAPAG EEECCEEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCEEEEECCC APPAGGWPLAIYQPSINRPKEDVIALAGSLTGAGFAVVAIDLPLHGALALPGHTTGTAWG CCCCCCCEEEEECCCCCCCHHHHHHHHCCCCCCCEEEEEEECCCCCEEECCCCCCCCCCC EDFIALGAPLATRTNIQQAALNLHRLELVAAPPSFDPALASQGFAALGANAPNPLVKPKF CCHHHHCCCCHHHCCHHHHHHCEEEEEEEECCCCCCHHHHHCCCEEECCCCCCCCCCCEE VGMSLGAIVGAYFLAGNTTLSAAPGTPPYTQATLDADMKGLLNVPGGRVAYLLRDSPDFG CCCHHHHHHHHHHHCCCCEEECCCCCCCCCEEECCCCCHHHEECCCCEEEEEEECCCCCC PGIVAGLAAHGIEPGTPLYHQFFQLTQSVVDPADPATMTTPLPNLANGTPLPSRLSGRVL CHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCHHHCCCEE MQEATSTSFDASGRPTNGDIVIPNSSTRYLGNALGGREVLGTPEARATAPGFDQLSYLSG EEECCCCCCCCCCCCCCCCEEECCCCCHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCC RVPAPFMMTLAGGLPVPKVAPAAGSATATAPREGYFQFDQPDAKHGSFIDLAGSPETLRL CCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCEEEECCCCHHHHH MQRQMVYFVLNGIAVDPTVVSPALPKVPVGTGGRIEYRITPPRTMKVFGSPK HHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCCEEEEEECCCCEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA