Click here to switch to the map view.

The map label for this gene is rfbU [H]

Identifier: 197117245

GI number: 197117245

Start: 1008220

End: 1009401

Strand: Direct

Name: rfbU [H]

Synonym: Gbem_0853

Alternate gene names: 197117245

Gene position: 1008220-1009401 (Clockwise)

Preceding gene: 308535197

Following gene: 197117246

Centisome position: 21.85

GC content: 60.49

Gene sequence:

>1182_bases
ATGAAGATTGGCTTGAGCCTTGTCAACTTTAATCCCGGCAAAATGGGGGGAGTGGAGGTCTATTTCAGGAACCTGCTGGA
ACATTTGCAGCGCGTGGACCCGGTGAACCAGTATTCGCTGCTGTGCGACGAACGGAGCGCCGGGCATTTTCGTCTTCATG
CCGAGAACTTCGACGAGCGCCTCATCCGGTGGCGCCACCCCCGCCCCTTGCGCTGGATCCGCAGCCTGTTGCGCCACGCC
TGCGGGGTTGATCTGCTGACCTCCCGGATCGACGCACTGGGGCTCGACATGGTGCATCACCCGTTCTCCATGATGAGCCT
GAAACCCGGGCAGACGCCGATAGTGGTCACCATACACGACATTCAGTACGAGTATTTCCCCGACTTCTTCGGGGAGGCGG
AGTGCCGCAGGCGGCGTGAGGGCGTTCTTGCAGCCATTTCCGCAGCGCGGGTGGTGCTGACCATCTCCGAATTCACCAGG
AGGTCCTTGGTCGAGCGGTACGGCGTCCCCGCCGAGAAAATAGTGGTGGCCTACATGGGGTGTGATCGAGATTTCAGGCG
CATCGAAGACCAGGCGGCACTGTCGGCGCTGCGGCAGAAATACGGCATCGATCGACCCTTTATCTACTTTCCGGCGGCCT
CTTGGCCGCACAAGAACCATACGGGCCTGTTGAGGGCGCTGAGGCTTCTCATCGACCGGTACCAGTTCGAGGGTGGACTG
GTCCTCACCGGCATTGCGCGCAACGGGCAGGAGGATATCGAGAGGCTGGTCGTAGAGCTGGGGCTCCAGGGCCGGGTCCG
GATGCTTGGTTATCTTGAGCGCGATGAACTGCCCGTCCTGTATTCCCTGGCCCGTATGCTGGTCTACCCCAGCTTTTTCG
AAGGGTTCGGCATTCCGCTTTTGGAGGCCATGGCTTGCGGGTGTCCCATCGCCTGTTCCAACGTCACATCGCTACCCGAG
GTGGCCGGGGACGCGGCCTTGATGTTCGATCCCGGCAGCACTGAAGATATGGCACGCGCCATTTGGGATGTGTGGTCCGA
CGAAGGGGTGCGTTCCTCTCTTTTGTCTGCGGCCAAGGAGAGGGAGAAGTTGTTCGATCTGGATGCCTTTGCCAGGGTGA
CAGCTGCCGCTTACAGCGCGGCGGCTGAACCGTCACGATTGACGCCACTTGATCCGCTTTAA

Upstream 100 bases:

>100_bases
GCAGTGTCGGCAAAAAGCACTACATCGTCATCAAACAGATCAATTGGTGGTTCAAGAGGTATCTCAAGTCTCCGATTTTA
AAGATGTTTGAGGGAGCTCC

Downstream 100 bases:

>100_bases
GGAGTCGCAATGACTTGCAGCCGTTTTCTCTTATCCATCTGCATCCCTACCTTCAACCGGGATTCGCTCCTTCGGGAGAC
ACTGAAAAGTCTGACCAGTC

Product: group glycosyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 393; Mature: 393

Protein sequence:

>393_residues
MKIGLSLVNFNPGKMGGVEVYFRNLLEHLQRVDPVNQYSLLCDERSAGHFRLHAENFDERLIRWRHPRPLRWIRSLLRHA
CGVDLLTSRIDALGLDMVHHPFSMMSLKPGQTPIVVTIHDIQYEYFPDFFGEAECRRRREGVLAAISAARVVLTISEFTR
RSLVERYGVPAEKIVVAYMGCDRDFRRIEDQAALSALRQKYGIDRPFIYFPAASWPHKNHTGLLRALRLLIDRYQFEGGL
VLTGIARNGQEDIERLVVELGLQGRVRMLGYLERDELPVLYSLARMLVYPSFFEGFGIPLLEAMACGCPIACSNVTSLPE
VAGDAALMFDPGSTEDMARAIWDVWSDEGVRSSLLSAAKEREKLFDLDAFARVTAAAYSAAAEPSRLTPLDPL

Sequences:

>Translated_393_residues
MKIGLSLVNFNPGKMGGVEVYFRNLLEHLQRVDPVNQYSLLCDERSAGHFRLHAENFDERLIRWRHPRPLRWIRSLLRHA
CGVDLLTSRIDALGLDMVHHPFSMMSLKPGQTPIVVTIHDIQYEYFPDFFGEAECRRRREGVLAAISAARVVLTISEFTR
RSLVERYGVPAEKIVVAYMGCDRDFRRIEDQAALSALRQKYGIDRPFIYFPAASWPHKNHTGLLRALRLLIDRYQFEGGL
VLTGIARNGQEDIERLVVELGLQGRVRMLGYLERDELPVLYSLARMLVYPSFFEGFGIPLLEAMACGCPIACSNVTSLPE
VAGDAALMFDPGSTEDMARAIWDVWSDEGVRSSLLSAAKEREKLFDLDAFARVTAAAYSAAAEPSRLTPLDPL
>Mature_393_residues
MKIGLSLVNFNPGKMGGVEVYFRNLLEHLQRVDPVNQYSLLCDERSAGHFRLHAENFDERLIRWRHPRPLRWIRSLLRHA
CGVDLLTSRIDALGLDMVHHPFSMMSLKPGQTPIVVTIHDIQYEYFPDFFGEAECRRRREGVLAAISAARVVLTISEFTR
RSLVERYGVPAEKIVVAYMGCDRDFRRIEDQAALSALRQKYGIDRPFIYFPAASWPHKNHTGLLRALRLLIDRYQFEGGL
VLTGIARNGQEDIERLVVELGLQGRVRMLGYLERDELPVLYSLARMLVYPSFFEGFGIPLLEAMACGCPIACSNVTSLPE
VAGDAALMFDPGSTEDMARAIWDVWSDEGVRSSLLSAAKEREKLFDLDAFARVTAAAYSAAAEPSRLTPLDPL

Specific function: May Be A Glycosyltransferase Involved In The Transfer Of UDP-Galf And UDP-Glucose. [C]

COG id: COG0438

COG function: function code M; Glycosyltransferase

Gene ontology:

Cell location: Inner Membrane-Associated [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001296 [H]

Pfam domain/function: PF00534 Glycos_transf_1 [H]

EC number: NA

Molecular weight: Translated: 44416; Mature: 44416

Theoretical pI: Translated: 6.85; Mature: 6.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIGLSLVNFNPGKMGGVEVYFRNLLEHLQRVDPVNQYSLLCDERSAGHFRLHAENFDER
CCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHEECCCCCCEEEEECCCHHHH
LIRWRHPRPLRWIRSLLRHACGVDLLTSRIDALGLDMVHHPFSMMSLKPGQTPIVVTIHD
HHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCEEEEEEE
IQYEYFPDFFGEAECRRRREGVLAAISAARVVLTISEFTRRSLVERYGVPAEKIVVAYMG
CCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEEEEEC
CDRDFRRIEDQAALSALRQKYGIDRPFIYFPAASWPHKNHTGLLRALRLLIDRYQFEGGL
CCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCE
VLTGIARNGQEDIERLVVELGLQGRVRMLGYLERDELPVLYSLARMLVYPSFFEGFGIPL
EEEEECCCCHHHHHHHHHHHCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHH
LEAMACGCPIACSNVTSLPEVAGDAALMFDPGSTEDMARAIWDVWSDEGVRSSLLSAAKE
HHHHHCCCCCCCCCCCCCHHHCCCEEEEECCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH
REKLFDLDAFARVTAAAYSAAAEPSRLTPLDPL
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MKIGLSLVNFNPGKMGGVEVYFRNLLEHLQRVDPVNQYSLLCDERSAGHFRLHAENFDER
CCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHEECCCCCCEEEEECCCHHHH
LIRWRHPRPLRWIRSLLRHACGVDLLTSRIDALGLDMVHHPFSMMSLKPGQTPIVVTIHD
HHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCEEEEEEE
IQYEYFPDFFGEAECRRRREGVLAAISAARVVLTISEFTRRSLVERYGVPAEKIVVAYMG
CCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEEEEEC
CDRDFRRIEDQAALSALRQKYGIDRPFIYFPAASWPHKNHTGLLRALRLLIDRYQFEGGL
CCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCE
VLTGIARNGQEDIERLVVELGLQGRVRMLGYLERDELPVLYSLARMLVYPSFFEGFGIPL
EEEEECCCCHHHHHHHHHHHCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHH
LEAMACGCPIACSNVTSLPEVAGDAALMFDPGSTEDMARAIWDVWSDEGVRSSLLSAAKE
HHHHHCCCCCCCCCCCCCHHHCCCEEEEECCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH
REKLFDLDAFARVTAAAYSAAAEPSRLTPLDPL
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1710759; 11677609 [H]