| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197117093
Identifier: 197117093
GI number: 197117093
Start: 825957
End: 826763
Strand: Reverse
Name: 197117093
Synonym: Gbem_0697
Alternate gene names: NA
Gene position: 826763-825957 (Counterclockwise)
Preceding gene: 197117094
Following gene: 197117089
Centisome position: 17.91
GC content: 63.94
Gene sequence:
>807_bases ATGTCAGAAGCACTGAAGCTAGCAGGGGGGATTCCCGTCTTCGACAGCCATTTCCACATCGTGGATCGCCGCTTCCCCCT GGTGCCGAACCAGGGGTATCTCCCCGACGACTTCGCCTGCGGGGACTACCTCGCGCGCACCGGCGACATGGCCCTTTGCG GCGGCGCCGTCGTTTCCGGATCCTTCCAGGCCATGGACCAAGCCTACCTGCTGGACGCGCTCGCCACCCTTGGGCCGGCC TTCGTCGGCGTCACGCAGCTGCCGTCGACGGTGAGCGACGCCGAACTGGCGAAGCTGGACGCGGCCGGGGTGCGGGCGGT TCGTTTCAACATCAAGCGGGGGGGATCGGAAGGGATCGAGCACCTGGAGCAGATGGCGCACAGGGTCTACCAGTTGCTGC GCTGGCACGTAGAGCTTTATATCGATTCGAGGGAGCTTGCGGGATTGGAGCAGACCCTGCTCACGCTGCCGGCGGTGAGC ATCGACCATCTTGGGCTGTCAAAAGAGGGGTTCAAGACGCTGTTGAAGCTGGCCGAGCGTGGGGTGCGGGTAAAGGCGAC CGGTTTTGGGCGGGTGGACTTCGACGTGAAGCAGGCTCTGAGGGATATAGCCTCGGCAAACCCCGAGGCGCTCATGTTCG GTACCGATCTTCCCTCGACCCGGGCGCCGCGCCCTTACCGGGACGAGGATCTGCTCCTGGTGCTGGATACGCTGGGGGAG GAATTGGCAAGGAAGGCGCTTTACCAAAACGCCCTGTCGTTCTACCGGCCGGCGAAGGACAGCTCTGCGGCCTTTGTTTC GGCTTAG
Upstream 100 bases:
>100_bases CTGATGGTTGTGGGGCTGATCAATTTCCTGCGCGAGATCTTCATCGCCAAGGGAAGCCTCAAGATAGGACCTAACTAAGG CGGCAACCCCGGAGGTATCC
Downstream 100 bases:
>100_bases GTTCAGGCCCCAGCCAGACGCTGGCAGGCCTCCTGCAACAACTCCAGGCGCTTACTGTTGGTGATCGCCAGGAAGGATTT CTCGTAGGTCTCGTCCGCGA
Product: PDC hydrolase-like protein
Products: NA
Alternate protein names: 2-Pyrone-4 6-Dicarboxylic Acid Hydrolase; Amidohydrolase; Dicarboxylic Acid Hydrolase; Metal-Dependent Hydrolase; Amidohydrolase Family Protein; 2-Pyrone-4 6-Dicarbaxylate Hydrolase; (2-Pyrone-4 6-)Dicarboxylic Acid Hydrolase; Amidase; 2-Pyrone-4 6-Dicarboxylate Lactonase; 2-Pyrone-4 6-Dicarboxylate Hydrolase; Transcriptional Regulator GntR; Metal-Dependent Transmembrane Hydrolase; PDC Hydrolase-Like Protein; Exported Protein
Number of amino acids: Translated: 268; Mature: 267
Protein sequence:
>268_residues MSEALKLAGGIPVFDSHFHIVDRRFPLVPNQGYLPDDFACGDYLARTGDMALCGGAVVSGSFQAMDQAYLLDALATLGPA FVGVTQLPSTVSDAELAKLDAAGVRAVRFNIKRGGSEGIEHLEQMAHRVYQLLRWHVELYIDSRELAGLEQTLLTLPAVS IDHLGLSKEGFKTLLKLAERGVRVKATGFGRVDFDVKQALRDIASANPEALMFGTDLPSTRAPRPYRDEDLLLVLDTLGE ELARKALYQNALSFYRPAKDSSAAFVSA
Sequences:
>Translated_268_residues MSEALKLAGGIPVFDSHFHIVDRRFPLVPNQGYLPDDFACGDYLARTGDMALCGGAVVSGSFQAMDQAYLLDALATLGPA FVGVTQLPSTVSDAELAKLDAAGVRAVRFNIKRGGSEGIEHLEQMAHRVYQLLRWHVELYIDSRELAGLEQTLLTLPAVS IDHLGLSKEGFKTLLKLAERGVRVKATGFGRVDFDVKQALRDIASANPEALMFGTDLPSTRAPRPYRDEDLLLVLDTLGE ELARKALYQNALSFYRPAKDSSAAFVSA >Mature_267_residues SEALKLAGGIPVFDSHFHIVDRRFPLVPNQGYLPDDFACGDYLARTGDMALCGGAVVSGSFQAMDQAYLLDALATLGPAF VGVTQLPSTVSDAELAKLDAAGVRAVRFNIKRGGSEGIEHLEQMAHRVYQLLRWHVELYIDSRELAGLEQTLLTLPAVSI DHLGLSKEGFKTLLKLAERGVRVKATGFGRVDFDVKQALRDIASANPEALMFGTDLPSTRAPRPYRDEDLLLVLDTLGEE LARKALYQNALSFYRPAKDSSAAFVSA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29168; Mature: 29036
Theoretical pI: Translated: 5.65; Mature: 5.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEALKLAGGIPVFDSHFHIVDRRFPLVPNQGYLPDDFACGDYLARTGDMALCGGAVVSG CCCHHHHHCCCCEECCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCEEEECCHHHCC SFQAMDQAYLLDALATLGPAFVGVTQLPSTVSDAELAKLDAAGVRAVRFNIKRGGSEGIE CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCEEEEEEEECCCCHHHHH HLEQMAHRVYQLLRWHVELYIDSRELAGLEQTLLTLPAVSIDHLGLSKEGFKTLLKLAER HHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHHC GVRVKATGFGRVDFDVKQALRDIASANPEALMFGTDLPSTRAPRPYRDEDLLLVLDTLGE CCEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCEEEHHHHHH ELARKALYQNALSFYRPAKDSSAAFVSA HHHHHHHHHHHHHHHCCCCCCCCCCCCC >Mature Secondary Structure SEALKLAGGIPVFDSHFHIVDRRFPLVPNQGYLPDDFACGDYLARTGDMALCGGAVVSG CCHHHHHCCCCEECCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCEEEECCHHHCC SFQAMDQAYLLDALATLGPAFVGVTQLPSTVSDAELAKLDAAGVRAVRFNIKRGGSEGIE CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCEEEEEEEECCCCHHHHH HLEQMAHRVYQLLRWHVELYIDSRELAGLEQTLLTLPAVSIDHLGLSKEGFKTLLKLAER HHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHHC GVRVKATGFGRVDFDVKQALRDIASANPEALMFGTDLPSTRAPRPYRDEDLLLVLDTLGE CCEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCEEEHHHHHH ELARKALYQNALSFYRPAKDSSAAFVSA HHHHHHHHHHHHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA