| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is yjlA [H]
Identifier: 197117089
GI number: 197117089
Start: 821056
End: 821997
Strand: Reverse
Name: yjlA [H]
Synonym: Gbem_0693
Alternate gene names: 197117089
Gene position: 821997-821056 (Counterclockwise)
Preceding gene: 197117093
Following gene: 197117088
Centisome position: 17.81
GC content: 60.08
Gene sequence:
>942_bases ATGACGCAACTGATAATAACCGGCGTATTTTCCGCACTTTTTTTCAGCAGCACCTTCGTCCTCAACCGAGCCATGAGCCT GCAGGGAGGGCACTGGCTCTGGAGTGCAAGCCTTCGATACCTTTACATGTTCGCCATGTTCAGCGCTTGGCTGGTGCTGA CAGGAAAGTCGCGCCTGCTTCGTGAGGTTTTCACCACCTACCGGAAAAACTGGTTTTTCTGGACCATTGCAGGGAGTACC GGGTTCGGGCTTTTTTACTCCCTGCTCACCTTCAGTTCGTCCTTCGCCCCGGGATGGGTGGTCGCCACCACCTGGCAATC GACGATTTTGGCCACGCCGCTGGTGCTGCTCCTTTTCGGCAAGCGGGTACCTGTGCGGGGGATCCTCTTCACGCTTTTGA TCTTCACCGGCATCGTCCTTGTCACCTGCGAGCAGGCAACCGCCGCGTCATGGAAGGAAACCCTGCTGGGCATCCTCCCG GTCCTTGCCGCCGCGTTCGCCTACCCCCTCGGCAACCAGCTGATGTGGGAGGCAAGACACGGGAGCATTGGGATCATCCC GAAAGTGGAAAGTTGCGTGCTTGACAGTGGCATCGGCAGGGTCTTGATCATGGTGATTGGCTCCCTCCCTTTCTGGGTGG TGCTGACAGTCGTACTGCGGCCTCCCGCACCGACCGGGGGGCAACTGCTCAATACCGCCATCGTTGCCGTCTTCTCCGGC GTCATCGCCACCACGCTTTTCTTCAAGGCGCGGCACTTGGCGCGGACCCCTTTCGAGCTTTCCGCGGTGGATGCCACCCA GGCTATGGAGGTGGTCTTCTCGCTGTTAGGGGAGATCGTCTTTCTGGGCGGGGCGTGGCCGGGATACGCGGGGGGCGCCG GGGTCGCGCTGTCGTTATTGGGACTCGTGCTCTATGTCAGATCGCAGGCCGTTGCCGATTGA
Upstream 100 bases:
>100_bases GCTTGCCCTAGCCCCGGAGTTTTCTCTTTACCTGGAGCGGGATTTCAGTTACAGAGTTACGCCTCAGGCAGAATTGATCG TTTACCAAGTAAAGGCCCCA
Downstream 100 bases:
>100_bases GATGGCACGTCCCCTGGAGCATTGACACCTCATCCGTTGTTGGCTACAGTCGCGTCCGTCGCACGCATTTCTTTGTCTTT GTCTAAATCGATGAAAGCGG
Product: membrane protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 313; Mature: 312
Protein sequence:
>313_residues MTQLIITGVFSALFFSSTFVLNRAMSLQGGHWLWSASLRYLYMFAMFSAWLVLTGKSRLLREVFTTYRKNWFFWTIAGST GFGLFYSLLTFSSSFAPGWVVATTWQSTILATPLVLLLFGKRVPVRGILFTLLIFTGIVLVTCEQATAASWKETLLGILP VLAAAFAYPLGNQLMWEARHGSIGIIPKVESCVLDSGIGRVLIMVIGSLPFWVVLTVVLRPPAPTGGQLLNTAIVAVFSG VIATTLFFKARHLARTPFELSAVDATQAMEVVFSLLGEIVFLGGAWPGYAGGAGVALSLLGLVLYVRSQAVAD
Sequences:
>Translated_313_residues MTQLIITGVFSALFFSSTFVLNRAMSLQGGHWLWSASLRYLYMFAMFSAWLVLTGKSRLLREVFTTYRKNWFFWTIAGST GFGLFYSLLTFSSSFAPGWVVATTWQSTILATPLVLLLFGKRVPVRGILFTLLIFTGIVLVTCEQATAASWKETLLGILP VLAAAFAYPLGNQLMWEARHGSIGIIPKVESCVLDSGIGRVLIMVIGSLPFWVVLTVVLRPPAPTGGQLLNTAIVAVFSG VIATTLFFKARHLARTPFELSAVDATQAMEVVFSLLGEIVFLGGAWPGYAGGAGVALSLLGLVLYVRSQAVAD >Mature_312_residues TQLIITGVFSALFFSSTFVLNRAMSLQGGHWLWSASLRYLYMFAMFSAWLVLTGKSRLLREVFTTYRKNWFFWTIAGSTG FGLFYSLLTFSSSFAPGWVVATTWQSTILATPLVLLLFGKRVPVRGILFTLLIFTGIVLVTCEQATAASWKETLLGILPV LAAAFAYPLGNQLMWEARHGSIGIIPKVESCVLDSGIGRVLIMVIGSLPFWVVLTVVLRPPAPTGGQLLNTAIVAVFSGV IATTLFFKARHLARTPFELSAVDATQAMEVVFSLLGEIVFLGGAWPGYAGGAGVALSLLGLVLYVRSQAVAD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33964; Mature: 33832
Theoretical pI: Translated: 10.18; Mature: 10.18
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQLIITGVFSALFFSSTFVLNRAMSLQGGHWLWSASLRYLYMFAMFSAWLVLTGKSRLL CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHH REVFTTYRKNWFFWTIAGSTGFGLFYSLLTFSSSFAPGWVVATTWQSTILATPLVLLLFG HHHHHHHHCCEEEEEEECCCHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHC KRVPVRGILFTLLIFTGIVLVTCEQATAASWKETLLGILPVLAAAFAYPLGNQLMWEARH CCCCHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECC GSIGIIPKVESCVLDSGIGRVLIMVIGSLPFWVVLTVVLRPPAPTGGQLLNTAIVAVFSG CCEECCCCHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH VIATTLFFKARHLARTPFELSAVDATQAMEVVFSLLGEIVFLGGAWPGYAGGAGVALSLL HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCHHHHHHHHH GLVLYVRSQAVAD HHHHHHHHHHCCC >Mature Secondary Structure TQLIITGVFSALFFSSTFVLNRAMSLQGGHWLWSASLRYLYMFAMFSAWLVLTGKSRLL CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHH REVFTTYRKNWFFWTIAGSTGFGLFYSLLTFSSSFAPGWVVATTWQSTILATPLVLLLFG HHHHHHHHCCEEEEEEECCCHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHC KRVPVRGILFTLLIFTGIVLVTCEQATAASWKETLLGILPVLAAAFAYPLGNQLMWEARH CCCCHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECC GSIGIIPKVESCVLDSGIGRVLIMVIGSLPFWVVLTVVLRPPAPTGGQLLNTAIVAVFSG CCEECCCCHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH VIATTLFFKARHLARTPFELSAVDATQAMEVVFSLLGEIVFLGGAWPGYAGGAGVALSLL HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCHHHHHHHHH GLVLYVRSQAVAD HHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]