| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197117072
Identifier: 197117072
GI number: 197117072
Start: 800274
End: 801353
Strand: Direct
Name: 197117072
Synonym: Gbem_0676
Alternate gene names: NA
Gene position: 800274-801353 (Clockwise)
Preceding gene: 197117071
Following gene: 197117073
Centisome position: 17.34
GC content: 60.83
Gene sequence:
>1080_bases GTGAGATACAGGGAAACCGCATTTTTTCTTACGCTGTCGATTGCCGCCTGGGTCTGCCTGAGCGTGTTGGCGCAACCCGG CGCATCGGCTTTTTCCTACGGTGAGGAGGCCGGCAAGAACGAGAGTTGCCTAGCCTGCCACGGCGATTCGGCGCAGGTGC CCAAAGGCTTCTTCATCGACACCAAGCACTTCAACCAGACCACCCACGCCAGGATCGGGTGCGAGGCCTGTCACGCGGCG GTCCCGGCCACCCATCCGGACGGCGCGAAGGTGGCAAGGGCTGGGTGCGGCGAGTGCCATGCCGACGTGGACCGGGAATA CGCCACTGGGCTGCACGTCAAAAAGACCACCTGCAACGGTTGCCACAACCCGCACATGGTGCACAGCCCCAAGGAGATCT CCGGGCAGGAGATCAACGCCATGTGCTCCAACTGCCACAACACGCTGGAAATGACGGCCAGGCACGGCGAGTGGCTCCCC CAGTCGGAACTGCACCTGCGGATGCTGCCGTGCATAACCTGCCATACCGGATCGAAGGAGTATTTCATCAGCATGTACAT AGTGAAGAGCAAGAACGGTTCGATGTTCGGCAAGCAGGAGGTGGCGGGGTACGACGAGTTGAAGCAGATGTCCGGGGGGA AGGAGATCGTCTCGCTGATCGACAAAAACCGCGACAACTACGTCTCGCTTGAGGAGCTGCGCGTCTTCAACCGCAGCCAG AATTCGCTGCGCCTGCACGGCATGATGACGCCGGTCTCCGTCTCGCACAAGTTCGAGATCCTCGACGACCGCCGCAACTG CACCTTCTGCCACACCTCAGGCCCGGCCCTGATGCAGACAAGCTTCATCGCGGTGCCGGAAGCCGACGGCAGCTACAGCC GCGTGCCGGTGGAAAAGGGAGCGGTCCTGGACGCACTTTACGGCACGCCCGACTTCTACATGATGGGGTCGACCAAGAAC GGCGCCTTGAACAAGATCGGCCTCGCCATCATCTGCGGCGGACTGATCATGCCGGTAGGCCACGGCTTTGTGCGCTTCTT GACCCGTAAAAACAGGAACACAAAGGAGCATAAGTCATGA
Upstream 100 bases:
>100_bases GATGCGCAAGCTGGGGGCGGTGCGAAAACAGGAAGCGAAGGGCGAAAAGAAATAACCCAAAGCCGCTGGGGGAAGCGATC CCCGGCAAAAGGAGGGGTAC
Downstream 100 bases:
>100_bases GCGAAAATTCGAGCGAGAAAAAGAGGATCTACCTCCAGCCCTGGCCGGTCCGCATCTGGCACTGGATCAACGCCACCGGC ATCATCGTCCTGATCGTAAC
Product: cytochrome c
Products: NA
Alternate protein names: Multiheme Cytochrome; Cytochrome C
Number of amino acids: Translated: 359; Mature: 359
Protein sequence:
>359_residues MRYRETAFFLTLSIAAWVCLSVLAQPGASAFSYGEEAGKNESCLACHGDSAQVPKGFFIDTKHFNQTTHARIGCEACHAA VPATHPDGAKVARAGCGECHADVDREYATGLHVKKTTCNGCHNPHMVHSPKEISGQEINAMCSNCHNTLEMTARHGEWLP QSELHLRMLPCITCHTGSKEYFISMYIVKSKNGSMFGKQEVAGYDELKQMSGGKEIVSLIDKNRDNYVSLEELRVFNRSQ NSLRLHGMMTPVSVSHKFEILDDRRNCTFCHTSGPALMQTSFIAVPEADGSYSRVPVEKGAVLDALYGTPDFYMMGSTKN GALNKIGLAIICGGLIMPVGHGFVRFLTRKNRNTKEHKS
Sequences:
>Translated_359_residues MRYRETAFFLTLSIAAWVCLSVLAQPGASAFSYGEEAGKNESCLACHGDSAQVPKGFFIDTKHFNQTTHARIGCEACHAA VPATHPDGAKVARAGCGECHADVDREYATGLHVKKTTCNGCHNPHMVHSPKEISGQEINAMCSNCHNTLEMTARHGEWLP QSELHLRMLPCITCHTGSKEYFISMYIVKSKNGSMFGKQEVAGYDELKQMSGGKEIVSLIDKNRDNYVSLEELRVFNRSQ NSLRLHGMMTPVSVSHKFEILDDRRNCTFCHTSGPALMQTSFIAVPEADGSYSRVPVEKGAVLDALYGTPDFYMMGSTKN GALNKIGLAIICGGLIMPVGHGFVRFLTRKNRNTKEHKS >Mature_359_residues MRYRETAFFLTLSIAAWVCLSVLAQPGASAFSYGEEAGKNESCLACHGDSAQVPKGFFIDTKHFNQTTHARIGCEACHAA VPATHPDGAKVARAGCGECHADVDREYATGLHVKKTTCNGCHNPHMVHSPKEISGQEINAMCSNCHNTLEMTARHGEWLP QSELHLRMLPCITCHTGSKEYFISMYIVKSKNGSMFGKQEVAGYDELKQMSGGKEIVSLIDKNRDNYVSLEELRVFNRSQ NSLRLHGMMTPVSVSHKFEILDDRRNCTFCHTSGPALMQTSFIAVPEADGSYSRVPVEKGAVLDALYGTPDFYMMGSTKN GALNKIGLAIICGGLIMPVGHGFVRFLTRKNRNTKEHKS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39485; Mature: 39485
Theoretical pI: Translated: 7.93; Mature: 7.93
Prosite motif: PS00018 EF_HAND_1 ; PS50222 EF_HAND_2 ; PS51008 MULTIHEME_CYTC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
4.5 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 8.4 %Cys+Met (Translated Protein) 4.5 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 8.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRYRETAFFLTLSIAAWVCLSVLAQPGASAFSYGEEAGKNESCLACHGDSAQVPKGFFID CCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHCCCCCCEEEECCCCCCCCCCEEEE TKHFNQTTHARIGCEACHAAVPATHPDGAKVARAGCGECHADVDREYATGLHVKKTTCNG CCCCCCCHHHHHCHHHHHHCCCCCCCCCHHHHHCCCCCHHHHCCHHHHCCCEEEECCCCC CHNPHMVHSPKEISGQEINAMCSNCHNTLEMTARHGEWLPQSELHLRMLPCITCHTGSKE CCCCCEECCCHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEECCCCE YFISMYIVKSKNGSMFGKQEVAGYDELKQMSGGKEIVSLIDKNRDNYVSLEELRVFNRSQ EEEEEEEEECCCCCCCCHHHHCCHHHHHHHCCHHHHHHHHHCCCCCEEEHHHHHHHHCCC NSLRLHGMMTPVSVSHKFEILDDRRNCTFCHTSGPALMQTSFIAVPEADGSYSRVPVEKG CCEEEEEEECCEECCEEEEEEECCCCEEEEECCCCCCEEEEEEEEECCCCCCCCCCCCCC AVLDALYGTPDFYMMGSTKNGALNKIGLAIICGGLIMPVGHGFVRFLTRKNRNTKEHKS CEEEHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure MRYRETAFFLTLSIAAWVCLSVLAQPGASAFSYGEEAGKNESCLACHGDSAQVPKGFFID CCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHCCCCCCEEEECCCCCCCCCCEEEE TKHFNQTTHARIGCEACHAAVPATHPDGAKVARAGCGECHADVDREYATGLHVKKTTCNG CCCCCCCHHHHHCHHHHHHCCCCCCCCCHHHHHCCCCCHHHHCCHHHHCCCEEEECCCCC CHNPHMVHSPKEISGQEINAMCSNCHNTLEMTARHGEWLPQSELHLRMLPCITCHTGSKE CCCCCEECCCHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEECCCCE YFISMYIVKSKNGSMFGKQEVAGYDELKQMSGGKEIVSLIDKNRDNYVSLEELRVFNRSQ EEEEEEEEECCCCCCCCHHHHCCHHHHHHHCCHHHHHHHHHCCCCCEEEHHHHHHHHCCC NSLRLHGMMTPVSVSHKFEILDDRRNCTFCHTSGPALMQTSFIAVPEADGSYSRVPVEKG CCEEEEEEECCEECCEEEEEEECCCCEEEEECCCCCCEEEEEEEEECCCCCCCCCCCCCC AVLDALYGTPDFYMMGSTKNGALNKIGLAIICGGLIMPVGHGFVRFLTRKNRNTKEHKS CEEEHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA