Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
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Accession | NC_011146 |
Length | 4,615,150 |
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The map label for this gene is thiG
Identifier: 197117050
GI number: 197117050
Start: 775367
End: 776149
Strand: Reverse
Name: thiG
Synonym: Gbem_0653
Alternate gene names: 197117050
Gene position: 776149-775367 (Counterclockwise)
Preceding gene: 197117051
Following gene: 197117049
Centisome position: 16.82
GC content: 64.37
Gene sequence:
>783_bases ATGACCCAGACAAACGACAAGCTCGTTATTGCAGGACGCGAATTCGACTCCCGCCTCATGGTCGGCACCGGAAAATATGC CGACTTCCAGCAGATGGTGCGCGCCATCGAGGTTTCCGGGGCGCAGATCATCACCGTGGCGGTGAGAAGGGTCAACATCT CGGACCGCAGCAAGGAGTCGCTGCTCGACCATATCGACCTGAAGAAGTACACGCTCCTTCCCAACACCGCCGGCTGCTAC ACCGCCGAGGACGCCATCCGCACCTGCCGCCTGGCGCGCGAGGCAGGGCTCTCCGATTTCGTGAAACTCGAGGTGCTGGG CGACGAGAAGACGCTCTATCCCAACAACGAGGAGCTCCTGAAGGCGGCCAAGGTGCTTCTGGCCGAGGGATTCACCGTCC TTCCCTACACAAGCGACGACCCCATCATCTGCAAAAAGCTGGAGGACATGGGATGCGCCGCGGTGATGCCGCTGGGAGCC CCCATAGGCTCCGGTCTCGGCATCCGCAACCCCTATAACATCCAGATCATCCTGGAGAGCGTCAAGGTGCCGGTCATCGT GGACGCGGGGGTCGGGACAGCCTCGGACGCTGCCATCGCCATGGAGCTCGGCTGCCACGGCGTCCTCATGAACACCGCCA TCGCCGGGGCCAAGGACCCGGTCGCCATGGCAGAGGCGATGAACTGCGCGGTGCGCGCGGGGAGGCTCGCCTACCTGGCC GGGCGCATCCCGAGGAAGCTCTACGCCAGCGCCTCCTCCCCCTTGGCGGGGCTCATCGGGTGA
Upstream 100 bases:
>100_bases CCTTCCGGCTTCCCTGCCCAAGGCAGGATAACGAGCGCCCGCCGCACCCGGGCCGGGGTCCCCCGGATCCTTCCGGGAAA TAGATAATTGGAGAATCGAG
Downstream 100 bases:
>100_bases AAGAGCTGGAATCCCCCTGGATAGACTTCAACCTCTACCTGATTACCGGCAGGGAGGAGACGCAGGGGCGCCCCCTCGGG TACGTGGTCGAGGAAGCGCT
Product: thiazole synthase
Products: 4-methyl-5-(beta-hydroxyethyl)thiazole phosphate; 4-hydroxy-benzyl-alcohol; C1 of tyrosine; ThiS protein [C]
Alternate protein names: NA
Number of amino acids: Translated: 260; Mature: 259
Protein sequence:
>260_residues MTQTNDKLVIAGREFDSRLMVGTGKYADFQQMVRAIEVSGAQIITVAVRRVNISDRSKESLLDHIDLKKYTLLPNTAGCY TAEDAIRTCRLAREAGLSDFVKLEVLGDEKTLYPNNEELLKAAKVLLAEGFTVLPYTSDDPIICKKLEDMGCAAVMPLGA PIGSGLGIRNPYNIQIILESVKVPVIVDAGVGTASDAAIAMELGCHGVLMNTAIAGAKDPVAMAEAMNCAVRAGRLAYLA GRIPRKLYASASSPLAGLIG
Sequences:
>Translated_260_residues MTQTNDKLVIAGREFDSRLMVGTGKYADFQQMVRAIEVSGAQIITVAVRRVNISDRSKESLLDHIDLKKYTLLPNTAGCY TAEDAIRTCRLAREAGLSDFVKLEVLGDEKTLYPNNEELLKAAKVLLAEGFTVLPYTSDDPIICKKLEDMGCAAVMPLGA PIGSGLGIRNPYNIQIILESVKVPVIVDAGVGTASDAAIAMELGCHGVLMNTAIAGAKDPVAMAEAMNCAVRAGRLAYLA GRIPRKLYASASSPLAGLIG >Mature_259_residues TQTNDKLVIAGREFDSRLMVGTGKYADFQQMVRAIEVSGAQIITVAVRRVNISDRSKESLLDHIDLKKYTLLPNTAGCYT AEDAIRTCRLAREAGLSDFVKLEVLGDEKTLYPNNEELLKAAKVLLAEGFTVLPYTSDDPIICKKLEDMGCAAVMPLGAP IGSGLGIRNPYNIQIILESVKVPVIVDAGVGTASDAAIAMELGCHGVLMNTAIAGAKDPVAMAEAMNCAVRAGRLAYLAG RIPRKLYASASSPLAGLIG
Specific function: Catalyzes the rearrangement of 1-deoxy-D-xylulose 5- phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S
COG id: COG2022
COG function: function code H; Uncharacterized enzyme of thiazole biosynthesis
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the thiG family
Homologues:
Organism=Escherichia coli, GI48994993, Length=252, Percent_Identity=49.6031746031746, Blast_Score=240, Evalue=8e-65,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): THIG_GEOBB (B5ED95)
Other databases:
- EMBL: CP001124 - RefSeq: YP_002137477.1 - ProteinModelPortal: B5ED95 - SMR: B5ED95 - GeneID: 6783486 - GenomeReviews: CP001124_GR - KEGG: gbm:Gbem_0653 - HOGENOM: HBG296821 - OMA: VAIRRTN - ProtClustDB: PRK00208 - GO: GO:0005737 - HAMAP: MF_00443 - InterPro: IPR013785 - InterPro: IPR008867 - Gene3D: G3DSA:3.20.20.70
Pfam domain/function: PF05690 ThiG; SSF110399 ThiG
EC number: NA
Molecular weight: Translated: 27657; Mature: 27525
Theoretical pI: Translated: 6.52; Mature: 6.52
Prosite motif: NA
Important sites: ACT_SITE 102-102 BINDING 163-163
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 5.8 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQTNDKLVIAGREFDSRLMVGTGKYADFQQMVRAIEVSGAQIITVAVRRVNISDRSKES CCCCCCEEEEEECCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCHHH LLDHIDLKKYTLLPNTAGCYTAEDAIRTCRLAREAGLSDFVKLEVLGDEKTLYPNNEELL HHHHCCCCEEEECCCCCCCEEHHHHHHHHHHHHHCCCCCEEEEEEECCCCEECCCCHHHH KAAKVLLAEGFTVLPYTSDDPIICKKLEDMGCAAVMPLGAPIGSGLGIRNPYNIQIILES HHHHHHHHCCCEEEEECCCCCHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCEEEEEEEC VKVPVIVDAGVGTASDAAIAMELGCHGVLMNTAIAGAKDPVAMAEAMNCAVRAGRLAYLA CCCCEEEECCCCCCCCCEEEEECCCCEEEEHHHHCCCCCHHHHHHHHHHHHHHCHHHHHH GRIPRKLYASASSPLAGLIG HHCCHHHHHCCCCCCCCCCC >Mature Secondary Structure TQTNDKLVIAGREFDSRLMVGTGKYADFQQMVRAIEVSGAQIITVAVRRVNISDRSKES CCCCCEEEEEECCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCHHH LLDHIDLKKYTLLPNTAGCYTAEDAIRTCRLAREAGLSDFVKLEVLGDEKTLYPNNEELL HHHHCCCCEEEECCCCCCCEEHHHHHHHHHHHHHCCCCCEEEEEEECCCCEECCCCHHHH KAAKVLLAEGFTVLPYTSDDPIICKKLEDMGCAAVMPLGAPIGSGLGIRNPYNIQIILES HHHHHHHHCCCEEEEECCCCCHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCEEEEEEEC VKVPVIVDAGVGTASDAAIAMELGCHGVLMNTAIAGAKDPVAMAEAMNCAVRAGRLAYLA CCCCEEEECCCCCCCCCEEEEECCCCEEEEHHHHCCCCCHHHHHHHHHHHHHHCHHHHHH GRIPRKLYASASSPLAGLIG HHCCHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: deoxyxylulose-5-phosphate; ThiS-COSH; L-tyrosine [C]
Specific reaction: deoxyxylulose-5-phosphate + ThiS-COSH + L-tyrosine = 4-methyl-5-(beta-hydroxyethyl)thiazole phosphate + 4-hydroxy-benzyl-alcohol + C1 of tyrosine + ThiS protein [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA