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The map label for this gene is nodV [H]

Identifier: 197116997

GI number: 197116997

Start: 719436

End: 721619

Strand: Direct

Name: nodV [H]

Synonym: Gbem_0600

Alternate gene names: 197116997

Gene position: 719436-721619 (Clockwise)

Preceding gene: 197116996

Following gene: 197116998

Centisome position: 15.59

GC content: 62.68

Gene sequence:

>2184_bases
ATGTTAAAGACGTTGAAATTGAAGAAGGGGCATGCGCTGTTGGCGGCCGGTCTCTCCCTGCTGTTCTGGCTCGGGGACAC
ATTTGTCGACGCCTATGTGTTCGGGAGGAGGTCGTTCGTCGACCAGCTACTGGCCCCCGAGCCGTTCGAGATATCCATGC
GCATTTTCTACGCCACCCTGGCCGGTATCTTCTTCACCGGACTTTTCCAGCTCTGGGAAAAGGGGCGCAAGGTGGAAACG
GCCCTGCGGCATTCCGACGATCTCTCCAAGATCTTCTTCGGCTCCTCCCGCGACGCCATCTGCGTGATCAAGACCGACAC
CCTCTCCGTCTCCGACGCCAACAGCGTTTTCGTGCAGAAATACGCGCTGAAGGACGCGCAGTCCGCCGGAAGCTTCCCCG
AACTCCTTGCCCGCAACGGTCTCACGGACCAGGTGCTGGGGCAGCTCGCGGCCTGCGCCGGGGGCGCCGCCCCGGTCAGC
TTCGAGATCAACTACCGCGGGGCAGATGGCGGCACCTGTTACGAGGAGGTCTCCATTCACCCGGTGGGCGAAATGCAGCA
GGATGTGGAGACGGTGCTCTACGTGGCTAGGGACATCACGGTGCGCAGGCGCTCGCAGGAGATGCTGGTGGCCTCGGAGG
CGAGGTACCGCGCCATCTTCGAGAACACCGGGACCGCGATGGCCATCATAGAGCCGGGAGGGATGCTGCAGACGGTGAAC
CGCGGCTTCGAGGCGGCCAGCGGGTACAGCCGCAGCGAGATCGAAGGGAAAAAGGTCTGGACCGATTTCGTCAAAAGCCC
GGAGGGAGGCGTGCTCGACCGTGGAGCGGGCGCACAACGCCGCACCTTCGAGGCGCTGCTGGAGGATAAAACCGGCACGC
AGCGCAGCATGGCCGGTAACTGGGCGCCCGTCGACGGGACCGAACAGGCTGTGCTGTCGCTGCTCGACATCAGTGCGAAC
AAGGAGGCGGAGGAGGAGCTCAGGAAGAGCCGGGCCACCCTCGCCGTCGCCCAGCGCATCGCCCGGCTCGGTAACTGGGA
CTGGGACCTCTGCACCAACTCGCTCAACTGGTCCGAGGAGATGTACCGCATTTTCGGGCTCGACCCGGCAGGATTCACCC
CCACCTATGACTGGTTCCTGCAGGTGGTGCACCCGCAGGACCTGGAGCGCGTGGTTCGTTCGACGAACGACGCGATCTAC
AACAGCAAGCCCTACCAGATCGACTACCGTATCTTGCTCCCAAGCGGCGCCGCGCGAACCATCTCGGCCAGCGCCGAGGT
GACCTACGACGCCCAGGGGAACCCGCTGCACATGGTGGGTACCAACCAGGACATCACTTGGCGCATCGAAGCGGAAGAGG
CGCTCAGGAGCTCTGAGGAGAAGTTCTCCAAGGCTTTCCACGCAAGCCCCGACTCCATCGTCATCACCCGCGCCGCGGAC
GGAACCTACATCGACGTCAACGAGGCGTTCCAGGTGATCACCGGGTACTCGCGAGACGAGGTGATCGGCAAGAGTTCCAC
CGAGGTCGGGCTTTGGGCAGACCCCGATGCGCGCATGGTGATGCTGAAGCTTTTGAACCAGCACGAGCACGTACGCAACC
TGGATGTCCGCTTCCGGGTGAAATCGGGGGAAGTCCGGGAGATGATCTGGTCTGCGGACGTCATCGAGTACGACGGGGAA
GCCTGCCTGATCGCCATATCCCGCGACGTGACGGACCAGAGGCAGATGGAGAAGGAGCTTCTGGAGAGCGACGCCCGCCT
CTACATGAAGCACGAGGAGCTGAAGAACGTCTTTCACCAGATGGAGGTGATCCGCCGCGAGTGGGAGGAGATCATGGACT
GCATCAGCGACATGTTCATCCTCGCCGACCAGTTCGGCAAGATCCGCAGGTTCAATCGCGCCGTGGAGACCTTCACCGGC
AAGGCGCACCGCGACATCGTGGGGAGGGACTGCGAAGCGTTCCTTAAAGAGCACGGCCTGGGGGCGCACCTTGCATCGCC
GGACCTGGAGTTGCTGCACAAGGAAACGGGCAAATGGTTCGTGGTGAAGCGCCATGCCTTCCCGAACGCCGAAGTCGACG
GCTCGTCGCGGGAGGTGGTTATCATTAACGAGACCACCAGCATACGGCGCAGGACGGGCCATGAGGCGCCACAAGCGGCA
ACAGAGGTTTCCGCTGCTAATTAG

Upstream 100 bases:

>100_bases
GCTGCTGATCTGATCCCTGTGGGAGGGAATGGCTAAAGTTATCCTTTCCCGCTGTCGATACGTGGAAGCGGCAGTGCTGG
CTGCCTGGAGGTCGGTTCGG

Downstream 100 bases:

>100_bases
AAACCATCGGCAACTCGGCAGGTTAGGGCGCTGCGGGCTCCTGAAAGCTTGACTTAAGGCCGAGAGCGTGCTATACGGGA
GCCTCGCCCAACAAAGGAGG

Product: sensor protein, PAS/PAS domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 727; Mature: 727

Protein sequence:

>727_residues
MLKTLKLKKGHALLAAGLSLLFWLGDTFVDAYVFGRRSFVDQLLAPEPFEISMRIFYATLAGIFFTGLFQLWEKGRKVET
ALRHSDDLSKIFFGSSRDAICVIKTDTLSVSDANSVFVQKYALKDAQSAGSFPELLARNGLTDQVLGQLAACAGGAAPVS
FEINYRGADGGTCYEEVSIHPVGEMQQDVETVLYVARDITVRRRSQEMLVASEARYRAIFENTGTAMAIIEPGGMLQTVN
RGFEAASGYSRSEIEGKKVWTDFVKSPEGGVLDRGAGAQRRTFEALLEDKTGTQRSMAGNWAPVDGTEQAVLSLLDISAN
KEAEEELRKSRATLAVAQRIARLGNWDWDLCTNSLNWSEEMYRIFGLDPAGFTPTYDWFLQVVHPQDLERVVRSTNDAIY
NSKPYQIDYRILLPSGAARTISASAEVTYDAQGNPLHMVGTNQDITWRIEAEEALRSSEEKFSKAFHASPDSIVITRAAD
GTYIDVNEAFQVITGYSRDEVIGKSSTEVGLWADPDARMVMLKLLNQHEHVRNLDVRFRVKSGEVREMIWSADVIEYDGE
ACLIAISRDVTDQRQMEKELLESDARLYMKHEELKNVFHQMEVIRREWEEIMDCISDMFILADQFGKIRRFNRAVETFTG
KAHRDIVGRDCEAFLKEHGLGAHLASPDLELLHKETGKWFVVKRHAFPNAEVDGSSREVVIINETTSIRRRTGHEAPQAA
TEVSAAN

Sequences:

>Translated_727_residues
MLKTLKLKKGHALLAAGLSLLFWLGDTFVDAYVFGRRSFVDQLLAPEPFEISMRIFYATLAGIFFTGLFQLWEKGRKVET
ALRHSDDLSKIFFGSSRDAICVIKTDTLSVSDANSVFVQKYALKDAQSAGSFPELLARNGLTDQVLGQLAACAGGAAPVS
FEINYRGADGGTCYEEVSIHPVGEMQQDVETVLYVARDITVRRRSQEMLVASEARYRAIFENTGTAMAIIEPGGMLQTVN
RGFEAASGYSRSEIEGKKVWTDFVKSPEGGVLDRGAGAQRRTFEALLEDKTGTQRSMAGNWAPVDGTEQAVLSLLDISAN
KEAEEELRKSRATLAVAQRIARLGNWDWDLCTNSLNWSEEMYRIFGLDPAGFTPTYDWFLQVVHPQDLERVVRSTNDAIY
NSKPYQIDYRILLPSGAARTISASAEVTYDAQGNPLHMVGTNQDITWRIEAEEALRSSEEKFSKAFHASPDSIVITRAAD
GTYIDVNEAFQVITGYSRDEVIGKSSTEVGLWADPDARMVMLKLLNQHEHVRNLDVRFRVKSGEVREMIWSADVIEYDGE
ACLIAISRDVTDQRQMEKELLESDARLYMKHEELKNVFHQMEVIRREWEEIMDCISDMFILADQFGKIRRFNRAVETFTG
KAHRDIVGRDCEAFLKEHGLGAHLASPDLELLHKETGKWFVVKRHAFPNAEVDGSSREVVIINETTSIRRRTGHEAPQAA
TEVSAAN
>Mature_727_residues
MLKTLKLKKGHALLAAGLSLLFWLGDTFVDAYVFGRRSFVDQLLAPEPFEISMRIFYATLAGIFFTGLFQLWEKGRKVET
ALRHSDDLSKIFFGSSRDAICVIKTDTLSVSDANSVFVQKYALKDAQSAGSFPELLARNGLTDQVLGQLAACAGGAAPVS
FEINYRGADGGTCYEEVSIHPVGEMQQDVETVLYVARDITVRRRSQEMLVASEARYRAIFENTGTAMAIIEPGGMLQTVN
RGFEAASGYSRSEIEGKKVWTDFVKSPEGGVLDRGAGAQRRTFEALLEDKTGTQRSMAGNWAPVDGTEQAVLSLLDISAN
KEAEEELRKSRATLAVAQRIARLGNWDWDLCTNSLNWSEEMYRIFGLDPAGFTPTYDWFLQVVHPQDLERVVRSTNDAIY
NSKPYQIDYRILLPSGAARTISASAEVTYDAQGNPLHMVGTNQDITWRIEAEEALRSSEEKFSKAFHASPDSIVITRAAD
GTYIDVNEAFQVITGYSRDEVIGKSSTEVGLWADPDARMVMLKLLNQHEHVRNLDVRFRVKSGEVREMIWSADVIEYDGE
ACLIAISRDVTDQRQMEKELLESDARLYMKHEELKNVFHQMEVIRREWEEIMDCISDMFILADQFGKIRRFNRAVETFTG
KAHRDIVGRDCEAFLKEHGLGAHLASPDLELLHKETGKWFVVKRHAFPNAEVDGSSREVVIINETTSIRRRTGHEAPQAA
TEVSAAN

Specific function: Member of the two-component regulatory system nodV/nodW probably involved in the regulation of the transcription of genes involved in the nodulation process. NodV may function as a membrane-associated protein kinase that phosphorylates nodW in response to

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI1788381, Length=472, Percent_Identity=20.5508474576271, Blast_Score=78, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013767
- InterPro:   IPR004358
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 81425; Mature: 81425

Theoretical pI: Translated: 5.14; Mature: 5.14

Prosite motif: PS50112 PAS ; PS50113 PAC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKTLKLKKGHALLAAGLSLLFWLGDTFVDAYVFGRRSFVDQLLAPEPFEISMRIFYATL
CCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
AGIFFTGLFQLWEKGRKVETALRHSDDLSKIFFGSSRDAICVIKTDTLSVSDANSVFVQK
HHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHCCCCCCEEEEEEECEEECCCCCHHHHHH
YALKDAQSAGSFPELLARNGLTDQVLGQLAACAGGAAPVSFEINYRGADGGTCYEEVSIH
HHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCHHHCCCC
PVGEMQQDVETVLYVARDITVRRRSQEMLVASEARYRAIFENTGTAMAIIEPGGMLQTVN
CCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHEECCCCEEEEECCCCHHHHHH
RGFEAASGYSRSEIEGKKVWTDFVKSPEGGVLDRGAGAQRRTFEALLEDKTGTQRSMAGN
HCHHHCCCCCCCCCCHHHHHHHHHCCCCCCCEECCCCCHHHHHHHHHHCCCCCCHHCCCC
WAPVDGTEQAVLSLLDISANKEAEEELRKSRATLAVAQRIARLGNWDWDLCTNSLNWSEE
CCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCHHHH
MYRIFGLDPAGFTPTYDWFLQVVHPQDLERVVRSTNDAIYNSKPYQIDYRILLPSGAART
HHHHCCCCCCCCCCCHHHHEEECCHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCCE
ISASAEVTYDAQGNPLHMVGTNQDITWRIEAEEALRSSEEKFSKAFHASPDSIVITRAAD
EECCCEEEECCCCCEEEEEECCCCEEEEEEHHHHHCCHHHHHHHHHCCCCCCEEEEEECC
GTYIDVNEAFQVITGYSRDEVIGKSSTEVGLWADPDARMVMLKLLNQHEHVRNLDVRFRV
CCEEEHHHHHHHHHCCCHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCEEEEEE
KSGEVREMIWSADVIEYDGEACLIAISRDVTDQRQMEKELLESDARLYMKHEELKNVFHQ
CCCHHHHHHHHCCCEEECCCEEEEEEECCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
MEVIRREWEEIMDCISDMFILADQFGKIRRFNRAVETFTGKAHRDIVGRDCEAFLKEHGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCHHHHHHHCCC
GAHLASPDLELLHKETGKWFVVKRHAFPNAEVDGSSREVVIINETTSIRRRTGHEAPQAA
CCCCCCCCHHHHHHCCCCEEEEEECCCCCCCCCCCCCEEEEEECCHHHHHHCCCCCCHHH
TEVSAAN
HHCCCCC
>Mature Secondary Structure
MLKTLKLKKGHALLAAGLSLLFWLGDTFVDAYVFGRRSFVDQLLAPEPFEISMRIFYATL
CCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
AGIFFTGLFQLWEKGRKVETALRHSDDLSKIFFGSSRDAICVIKTDTLSVSDANSVFVQK
HHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHCCCCCCEEEEEEECEEECCCCCHHHHHH
YALKDAQSAGSFPELLARNGLTDQVLGQLAACAGGAAPVSFEINYRGADGGTCYEEVSIH
HHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCHHHCCCC
PVGEMQQDVETVLYVARDITVRRRSQEMLVASEARYRAIFENTGTAMAIIEPGGMLQTVN
CCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHEECCCCEEEEECCCCHHHHHH
RGFEAASGYSRSEIEGKKVWTDFVKSPEGGVLDRGAGAQRRTFEALLEDKTGTQRSMAGN
HCHHHCCCCCCCCCCHHHHHHHHHCCCCCCCEECCCCCHHHHHHHHHHCCCCCCHHCCCC
WAPVDGTEQAVLSLLDISANKEAEEELRKSRATLAVAQRIARLGNWDWDLCTNSLNWSEE
CCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCHHHH
MYRIFGLDPAGFTPTYDWFLQVVHPQDLERVVRSTNDAIYNSKPYQIDYRILLPSGAART
HHHHCCCCCCCCCCCHHHHEEECCHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCCE
ISASAEVTYDAQGNPLHMVGTNQDITWRIEAEEALRSSEEKFSKAFHASPDSIVITRAAD
EECCCEEEECCCCCEEEEEECCCCEEEEEEHHHHHCCHHHHHHHHHCCCCCCEEEEEECC
GTYIDVNEAFQVITGYSRDEVIGKSSTEVGLWADPDARMVMLKLLNQHEHVRNLDVRFRV
CCEEEHHHHHHHHHCCCHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCEEEEEE
KSGEVREMIWSADVIEYDGEACLIAISRDVTDQRQMEKELLESDARLYMKHEELKNVFHQ
CCCHHHHHHHHCCCEEECCCEEEEEEECCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
MEVIRREWEEIMDCISDMFILADQFGKIRRFNRAVETFTGKAHRDIVGRDCEAFLKEHGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCHHHHHHHCCC
GAHLASPDLELLHKETGKWFVVKRHAFPNAEVDGSSREVVIINETTSIRRRTGHEAPQAA
CCCCCCCCHHHHHHCCCCEEEEEECCCCCCCCCCCCCEEEEEECCHHHHHHCCCCCCHHH
TEVSAAN
HHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2320582; 11157954; 12597275 [H]