| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is clpB [H]
Identifier: 197116967
GI number: 197116967
Start: 691256
End: 693850
Strand: Reverse
Name: clpB [H]
Synonym: Gbem_0570
Alternate gene names: 197116967
Gene position: 693850-691256 (Counterclockwise)
Preceding gene: 197116969
Following gene: 197116966
Centisome position: 15.03
GC content: 63.39
Gene sequence:
>2595_bases ATGATACGACCGGAAAAAATGACCGTTAAGACACAGGAAGCACTGGTGACGGCGCAGGAGAAAGCGGCAGAGATGTCCGC CGGCAGCATCGAGGCCGAACACCTGCTGCTCGCCCTCATAGACCAGGAGGGAGGGTTCGTCCCCGACCTTTTGAAGAAAA TAGGAGCGCCGCTGGCCAAGCTGCGCGAGAGCGTCGACGAGACGCTGAAGCGTCTGCCCAAGGTCACCGGAGCTGCCCAG GTCTCGCTCTCCGCCACGCTGAACCGGGTACTGGACCAGGCCCAGAAAGAGGCGGACTCCATGCACGACGCGTTCGTCTC CACGGAGCACCTGCTTTTGGCGCTGGTGGCAGCGAAGGACGCACCGAGTTCCCGGCTCTTGAGCCAGAACGGGGTTACCC GCGACGGGATCCTGTCGGCGCTCAAAGAACTGCGCGGCGGCGAGGCGGTGAACGAGCAGGACCCGGAGGGGAAATACCAG GCGCTTGCCAAGTACTGTCGCGACCTCACCGACCTGGCAAGGCAGGGGAAACTCGACCCGGTGATCGGGCGCGACGACGA AGTAAGAAGGGTGCTCCAGGTCCTGTCGCGCCGCACCAAGAACAACCCGGTGCTGATCGGGGAGCCTGGCGTCGGCAAGA CCGCCATCGTCGAGGGACTCGCCCAGCGCATCGTTTCGGGCGACGTCCCCGAATCGCTCAAGGACAAGGTGATCATGGCG CTCGACATGGGGGCGCTGATCGCAGGGGCGAAGTACCGCGGCGAGTTCGAGGAGCGCCTGAAGGCGGTGATCAAGGAGGT GGCGCGCTCGGAAGGTAAGATCATCCTCTTCATCGACGAGATGCACACGCTGGTGGGAGCCGGTGCCGCCGAGGGGGCGA TGGACGCCTCCAACATGCTGAAGCCGGCCCTGGCCCGCGGAGAGCTGCACTGCATCGGCGCCACGACCCTCAACGAATAC CGCAAGCACATCGAGAAGGACGCCGCCCTGGAACGCCGCTTCCAGCAGGTATTCGCCGGCGAGCCGAGCGTGGAGGAGAC CATCTCCATCCTCAGGGGGCTCAAGGAGAAGTACGAGAACTACCACAAGATACGGATCAAGGACGGCGCCATCATCGCCG CGGCCACCCTTTCGGACCGCTACATCACCGACCGCTTCCTCCCCGACAAAGCGATCGACCTGATCGACGAGGCCGCGTCC CGCCTACGGATCGAGATCGATTCGAAGCCGACCGAGATCGACGAAATCGACCGGCGCATCATCCAGCTCGAGATCGAGCG CCAGGCCATGCTGCGCGAGCAGGACACGAAGGTGCTGGACCGGCTCAAAAAGCTAGAGGAGGAACTGGACGGGTTGAAGG CGCAGTCGGCGAAGCTGAACGAACATTGGAAAAGGGAGACCAACCTCCTTAAGGATTTGGGGGAGCTGAAGCAGCGCAAG GAGGAGAAAGCCGAGGAAGCCAAGCGTGCGGAGCGCGACGGGCTCTTGGCCCGCACCGCCGAGATCCGCTACGGCGAGAT ACCCGCCATCGAGAAGGAGATGGAGGAGAAGCGGCTCACCCTGGAGTCGGTCCAGAAGGAAGAGAAGATGCTCCCGGAAG AAGTCGACGCCGAGATGGTGGCCGAGGTGGTGGCCAAGTGGACCGGCATACCGGTGAACCGGATGCTGGAGACCGAGTCC GACAAGCTGGTCAAGATGGAGGAGCGGCTCAAAAGCCGCGTGGTGGGGCAGGACGAGGCGCTCACCCTGGTGGCGAACGC GGTGCGGCGCGCCCGCAGCGGCCTATCCGACCCCAACCGCCCCATCGGCTCCTTCATCTTCCTGGGACCTACCGGCGTCG GCAAGACCGAGACGGCACGGGCCTTGGCCTCGTTTCTCTTCGACGACGATCAGGCCATCGTCCGCATCGACATGAGCGAA TACCAGGAGAAGCACACGGTCGCCCGCCTGATCGGAGCCCCTCCCGGGTACGTCGGCTACGAGGAGGGAGGGCAACTCAC CGAGGCGGTGCGCCGCCGCCCCTACTGCATCGTCCTATTCGACGAGATCGAGAAGGCGCACCCCGAGGTGTTCAACGTCT TCCTGCAAATATTGGACGACGGCCGGCTCACCGACGGCCAGGGGCGGACGGTCGATTTCAAGAACTCGGTCATCATCATG ACCAGCAACCTGGGGTCGCAGTGGATCCAGCAGTACGGGGCCGCCGACTACGGAAAAATGCAAAGCGAGGTCATGGAGAC CCTGCGGGAGGCATTCAAGCCCGAGTTCCTGAACCGGGTCGACGAGATCGTCATCTACCACTCGCTGCCGCTGGAAAGGA TCAAGGAAATCGTCTCCATCCAATTGCAGTCGCTCACCAAAAGACTGGAGGAAAAGGGACTCGGCTTGGAGGTGACCGAG CAGGCTCGCGAATTCCTGGCCCGGGAGGGATACGACCCTGCCTACGGGGCAAGGCCGCTCAAGCGCGCGCTGCAAAGGAA GATCCAGGACCCGCTGGCGCTCATGCTGCTTGAGAACAAGTTCGCCCCGGGCGACATAGTGGTGGTCGACCTCCCGGCGC AGGGAGACTCCCTGACCATCGGGAAAAAGGCATGA
Upstream 100 bases:
>100_bases CGGGCGCTCCCGCCCATACTCTCAAGCTAAAAACCTCGCCCAGCCTTGACACTACCCATCCCCCTACTTATCTTCTTCTA GGACTTTAGGAGGCACTGCC
Downstream 100 bases:
>100_bases TGCTGTAAACGGTAATTAATAAATTGCCAACTTTCGGCAAAGCTGATAGTGTACGCGGCGCAAAGCTGCTGCTTTGCGCC GCGCTTGCGGCACCTACCCT
Product: ATP-dependent chaperone ClpB
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 864; Mature: 864
Protein sequence:
>864_residues MIRPEKMTVKTQEALVTAQEKAAEMSAGSIEAEHLLLALIDQEGGFVPDLLKKIGAPLAKLRESVDETLKRLPKVTGAAQ VSLSATLNRVLDQAQKEADSMHDAFVSTEHLLLALVAAKDAPSSRLLSQNGVTRDGILSALKELRGGEAVNEQDPEGKYQ ALAKYCRDLTDLARQGKLDPVIGRDDEVRRVLQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVSGDVPESLKDKVIMA LDMGALIAGAKYRGEFEERLKAVIKEVARSEGKIILFIDEMHTLVGAGAAEGAMDASNMLKPALARGELHCIGATTLNEY RKHIEKDAALERRFQQVFAGEPSVEETISILRGLKEKYENYHKIRIKDGAIIAAATLSDRYITDRFLPDKAIDLIDEAAS RLRIEIDSKPTEIDEIDRRIIQLEIERQAMLREQDTKVLDRLKKLEEELDGLKAQSAKLNEHWKRETNLLKDLGELKQRK EEKAEEAKRAERDGLLARTAEIRYGEIPAIEKEMEEKRLTLESVQKEEKMLPEEVDAEMVAEVVAKWTGIPVNRMLETES DKLVKMEERLKSRVVGQDEALTLVANAVRRARSGLSDPNRPIGSFIFLGPTGVGKTETARALASFLFDDDQAIVRIDMSE YQEKHTVARLIGAPPGYVGYEEGGQLTEAVRRRPYCIVLFDEIEKAHPEVFNVFLQILDDGRLTDGQGRTVDFKNSVIIM TSNLGSQWIQQYGAADYGKMQSEVMETLREAFKPEFLNRVDEIVIYHSLPLERIKEIVSIQLQSLTKRLEEKGLGLEVTE QAREFLAREGYDPAYGARPLKRALQRKIQDPLALMLLENKFAPGDIVVVDLPAQGDSLTIGKKA
Sequences:
>Translated_864_residues MIRPEKMTVKTQEALVTAQEKAAEMSAGSIEAEHLLLALIDQEGGFVPDLLKKIGAPLAKLRESVDETLKRLPKVTGAAQ VSLSATLNRVLDQAQKEADSMHDAFVSTEHLLLALVAAKDAPSSRLLSQNGVTRDGILSALKELRGGEAVNEQDPEGKYQ ALAKYCRDLTDLARQGKLDPVIGRDDEVRRVLQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVSGDVPESLKDKVIMA LDMGALIAGAKYRGEFEERLKAVIKEVARSEGKIILFIDEMHTLVGAGAAEGAMDASNMLKPALARGELHCIGATTLNEY RKHIEKDAALERRFQQVFAGEPSVEETISILRGLKEKYENYHKIRIKDGAIIAAATLSDRYITDRFLPDKAIDLIDEAAS RLRIEIDSKPTEIDEIDRRIIQLEIERQAMLREQDTKVLDRLKKLEEELDGLKAQSAKLNEHWKRETNLLKDLGELKQRK EEKAEEAKRAERDGLLARTAEIRYGEIPAIEKEMEEKRLTLESVQKEEKMLPEEVDAEMVAEVVAKWTGIPVNRMLETES DKLVKMEERLKSRVVGQDEALTLVANAVRRARSGLSDPNRPIGSFIFLGPTGVGKTETARALASFLFDDDQAIVRIDMSE YQEKHTVARLIGAPPGYVGYEEGGQLTEAVRRRPYCIVLFDEIEKAHPEVFNVFLQILDDGRLTDGQGRTVDFKNSVIIM TSNLGSQWIQQYGAADYGKMQSEVMETLREAFKPEFLNRVDEIVIYHSLPLERIKEIVSIQLQSLTKRLEEKGLGLEVTE QAREFLAREGYDPAYGARPLKRALQRKIQDPLALMLLENKFAPGDIVVVDLPAQGDSLTIGKKA >Mature_864_residues MIRPEKMTVKTQEALVTAQEKAAEMSAGSIEAEHLLLALIDQEGGFVPDLLKKIGAPLAKLRESVDETLKRLPKVTGAAQ VSLSATLNRVLDQAQKEADSMHDAFVSTEHLLLALVAAKDAPSSRLLSQNGVTRDGILSALKELRGGEAVNEQDPEGKYQ ALAKYCRDLTDLARQGKLDPVIGRDDEVRRVLQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVSGDVPESLKDKVIMA LDMGALIAGAKYRGEFEERLKAVIKEVARSEGKIILFIDEMHTLVGAGAAEGAMDASNMLKPALARGELHCIGATTLNEY RKHIEKDAALERRFQQVFAGEPSVEETISILRGLKEKYENYHKIRIKDGAIIAAATLSDRYITDRFLPDKAIDLIDEAAS RLRIEIDSKPTEIDEIDRRIIQLEIERQAMLREQDTKVLDRLKKLEEELDGLKAQSAKLNEHWKRETNLLKDLGELKQRK EEKAEEAKRAERDGLLARTAEIRYGEIPAIEKEMEEKRLTLESVQKEEKMLPEEVDAEMVAEVVAKWTGIPVNRMLETES DKLVKMEERLKSRVVGQDEALTLVANAVRRARSGLSDPNRPIGSFIFLGPTGVGKTETARALASFLFDDDQAIVRIDMSE YQEKHTVARLIGAPPGYVGYEEGGQLTEAVRRRPYCIVLFDEIEKAHPEVFNVFLQILDDGRLTDGQGRTVDFKNSVIIM TSNLGSQWIQQYGAADYGKMQSEVMETLREAFKPEFLNRVDEIVIYHSLPLERIKEIVSIQLQSLTKRLEEKGLGLEVTE QAREFLAREGYDPAYGARPLKRALQRKIQDPLALMLLENKFAPGDIVVVDLPAQGDSLTIGKKA
Specific function: Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE. Acts before DnaK, in the processing of protein aggregates. Protein binding stimulates the ATPase
COG id: COG0542
COG function: function code O; ATPases with chaperone activity, ATP-binding subunit
Gene ontology:
Cell location: Cytoplasm (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the clpA/clpB family [H]
Homologues:
Organism=Homo sapiens, GI13540606, Length=314, Percent_Identity=36.624203821656, Blast_Score=213, Evalue=9e-55, Organism=Escherichia coli, GI1788943, Length=848, Percent_Identity=57.311320754717, Blast_Score=979, Evalue=0.0, Organism=Escherichia coli, GI1787109, Length=455, Percent_Identity=39.5604395604396, Blast_Score=291, Evalue=9e-80, Organism=Saccharomyces cerevisiae, GI6320464, Length=704, Percent_Identity=50.8522727272727, Blast_Score=718, Evalue=0.0, Organism=Saccharomyces cerevisiae, GI6323002, Length=855, Percent_Identity=42.6900584795322, Blast_Score=664, Evalue=0.0,
Paralogues:
None
Copy number: 560 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR013093 - InterPro: IPR003959 - InterPro: IPR018368 - InterPro: IPR017730 - InterPro: IPR001270 - InterPro: IPR019489 - InterPro: IPR004176 - InterPro: IPR023150 [H]
Pfam domain/function: PF00004 AAA; PF07724 AAA_2; PF02861 Clp_N; PF10431 ClpB_D2-small [H]
EC number: NA
Molecular weight: Translated: 96381; Mature: 96381
Theoretical pI: Translated: 5.20; Mature: 5.20
Prosite motif: PS00870 CLPAB_1 ; PS00871 CLPAB_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIRPEKMTVKTQEALVTAQEKAAEMSAGSIEAEHLLLALIDQEGGFVPDLLKKIGAPLAK CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHEECCCCCCHHHHHHHHCCCHHH LRESVDETLKRLPKVTGAAQVSLSATLNRVLDQAQKEADSMHDAFVSTEHLLLALVAAKD HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC APSSRLLSQNGVTRDGILSALKELRGGEAVNEQDPEGKYQALAKYCRDLTDLARQGKLDP CCHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC VIGRDDEVRRVLQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVSGDVPESLKDKVIMA CCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHEEHH LDMGALIAGAKYRGEFEERLKAVIKEVARSEGKIILFIDEMHTLVGAGAAEGAMDASNML CCHHHHHHCCHHCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHCCCCCCCCCCHHHHH KPALARGELHCIGATTLNEYRKHIEKDAALERRFQQVFAGEPSVEETISILRGLKEKYEN HHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC YHKIRIKDGAIIAAATLSDRYITDRFLPDKAIDLIDEAASRLRIEIDSKPTEIDEIDRRI CEEEEEECCCEEEEEECCCHHHHHHCCCHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHH IQLEIERQAMLREQDTKVLDRLKKLEEELDGLKAQSAKLNEHWKRETNLLKDLGELKQRK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH EEKAEEAKRAERDGLLARTAEIRYGEIPAIEKEMEEKRLTLESVQKEEKMLPEEVDAEMV HHHHHHHHHHHHCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHCCHHHH AEVVAKWTGIPVNRMLETESDKLVKMEERLKSRVVGQDEALTLVANAVRRARSGLSDPNR HHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCC PIGSFIFLGPTGVGKTETARALASFLFDDDQAIVRIDMSEYQEKHTVARLIGAPPGYVGY CCCCEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHCCCCCCCCC EEGGQLTEAVRRRPYCIVLFDEIEKAHPEVFNVFLQILDDGRLTDGQGRTVDFKNSVIIM CCCCHHHHHHHHCCEEEEEEHHHHHHCHHHHHHHHHHHCCCCCCCCCCCEEEECCCEEEE TSNLGSQWIQQYGAADYGKMQSEVMETLREAFKPEFLNRVDEIVIYHSLPLERIKEIVSI ECCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCHHHHHHHHHH QLQSLTKRLEEKGLGLEVTEQAREFLAREGYDPAYGARPLKRALQRKIQDPLALMLLENK HHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHCC FAPGDIVVVDLPAQGDSLTIGKKA CCCCCEEEEEECCCCCCCCCCCCC >Mature Secondary Structure MIRPEKMTVKTQEALVTAQEKAAEMSAGSIEAEHLLLALIDQEGGFVPDLLKKIGAPLAK CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHEECCCCCCHHHHHHHHCCCHHH LRESVDETLKRLPKVTGAAQVSLSATLNRVLDQAQKEADSMHDAFVSTEHLLLALVAAKD HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC APSSRLLSQNGVTRDGILSALKELRGGEAVNEQDPEGKYQALAKYCRDLTDLARQGKLDP CCHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC VIGRDDEVRRVLQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVSGDVPESLKDKVIMA CCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHEEHH LDMGALIAGAKYRGEFEERLKAVIKEVARSEGKIILFIDEMHTLVGAGAAEGAMDASNML CCHHHHHHCCHHCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHCCCCCCCCCCHHHHH KPALARGELHCIGATTLNEYRKHIEKDAALERRFQQVFAGEPSVEETISILRGLKEKYEN HHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC YHKIRIKDGAIIAAATLSDRYITDRFLPDKAIDLIDEAASRLRIEIDSKPTEIDEIDRRI CEEEEEECCCEEEEEECCCHHHHHHCCCHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHH IQLEIERQAMLREQDTKVLDRLKKLEEELDGLKAQSAKLNEHWKRETNLLKDLGELKQRK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH EEKAEEAKRAERDGLLARTAEIRYGEIPAIEKEMEEKRLTLESVQKEEKMLPEEVDAEMV HHHHHHHHHHHHCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHCCHHHH AEVVAKWTGIPVNRMLETESDKLVKMEERLKSRVVGQDEALTLVANAVRRARSGLSDPNR HHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCC PIGSFIFLGPTGVGKTETARALASFLFDDDQAIVRIDMSEYQEKHTVARLIGAPPGYVGY CCCCEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHCCCCCCCCC EEGGQLTEAVRRRPYCIVLFDEIEKAHPEVFNVFLQILDDGRLTDGQGRTVDFKNSVIIM CCCCHHHHHHHHCCEEEEEEHHHHHHCHHHHHHHHHHHCCCCCCCCCCCEEEECCCEEEE TSNLGSQWIQQYGAADYGKMQSEVMETLREAFKPEFLNRVDEIVIYHSLPLERIKEIVSI ECCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCHHHHHHHHHH QLQSLTKRLEEKGLGLEVTEQAREFLAREGYDPAYGARPLKRALQRKIQDPLALMLLENK HHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHCC FAPGDIVVVDLPAQGDSLTIGKKA CCCCCEEEEEECCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Hydrolase; Acting on peptide bonds (Peptidases); Serine endopeptidases [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA