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The map label for this gene is ycaL [H]

Identifier: 197116912

GI number: 197116912

Start: 621720

End: 622751

Strand: Direct

Name: ycaL [H]

Synonym: Gbem_0514

Alternate gene names: 197116912

Gene position: 621720-622751 (Clockwise)

Preceding gene: 197116911

Following gene: 308535170

Centisome position: 13.47

GC content: 62.21

Gene sequence:

>1032_bases
ATGATCGATTCCTGCGCTGCATTCTGGTACGACGGCCGTACCTCGCAAAGGCGGGAGGTGACGGTGAGTCTCGTCGAGTG
TTCTTTGATAGTGTCCGGGCCGGATCTGGAACGCGCGTATCCTCTGGCGGAGGTCCGGATCGACCAGCGCCTGGGGAGGG
TGCGGCGCACGCTGCGATTCCCCGACGGCGCGTCCGCGGAGACCGGTGCAGATGACTTTCTGGACGAGCTGCTGAAAACA
CAGGGGAGGGGCGGTTTCGTCGGGCGTTTGCACCGCTGGGAAATGAGTCTTGGCAAGGCAGGCGCTGCTTTGCTCCTCAC
GCTGGCTGTCGTCTTTTGCCTGGTTCGATACGGCGTTCCCTTGTTAGCGCAGAGGGTAGCCTTCGCCCTACCTGCTGCGA
CCGAGGAGGCTATCGGCCGGGAAACCCTGCAGATCCTCGACAAGGTGGCCTTGCAGCCGAGCGCGCTCCCCAAAGAACGC
CGGCTGGAGTTGGAGCGCCTTTTCCGCGCCATGGTCTCGCAGCATCCCGAACGCCGCGGGTGGCGCCTGGAGTTTAGGGC
TTCCAGGGAGATAGGCGCCAATGCCTTCGCACTCCCCTCCGGCATCGTCATCCTGACCGATCGCATGGTGGAAATTGCCG
AAAACGATCACCAACTGGCCGGGGTGCTGGCCCATGAGACGGGGCATGTAACCCACAGGCACGCCCTGCGCCATCTGCTG
CAGAATTCGGCCACAGCTCTCGTGGTCGCCGGCTTGACCGGAGACATCGTCTCGGTCAGCTCTTTTGCTGCAACCATGCC
TGCAGTCATCATCAATGCAAAATACTCGCGCGATTTCGAGCGGGAAGCGGATGCCGCTGCAGTTGAGTACCTGAAGGGAA
GGGGTATCCCGGTGCGCCGCTACGCCGAGATCTTGGCGCGGCTCGATGCGGATCATTACAAAGAGCGGGACGCAGTTCCC
CGCCTCGGGGAGATGCTTGGCAGTCATCCTTTGATGCTGGAAAGGGTGCAAAACGTGTTGGCCGCCGAGTAG

Upstream 100 bases:

>100_bases
CGGGTGTGGGCGGTTTCGATGCCATCCGGGCTTCAGAGGACCAGCAGGTAGGCGCCGGGCCTGAGGAACTGGTGGACATG
GTGGGGTTCGACCTGGGACT

Downstream 100 bases:

>100_bases
GTGCGGCTGCGCCAGCGGAGTTGCTTGTCGTTCCGCGAAAACTAACCAATCAACTACAAGCTCTGTACGATGGAGGGAGC
GTGAAAACTTTATTTCGAAC

Product: peptidase M48 family peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 343; Mature: 343

Protein sequence:

>343_residues
MIDSCAAFWYDGRTSQRREVTVSLVECSLIVSGPDLERAYPLAEVRIDQRLGRVRRTLRFPDGASAETGADDFLDELLKT
QGRGGFVGRLHRWEMSLGKAGAALLLTLAVVFCLVRYGVPLLAQRVAFALPAATEEAIGRETLQILDKVALQPSALPKER
RLELERLFRAMVSQHPERRGWRLEFRASREIGANAFALPSGIVILTDRMVEIAENDHQLAGVLAHETGHVTHRHALRHLL
QNSATALVVAGLTGDIVSVSSFAATMPAVIINAKYSRDFEREADAAAVEYLKGRGIPVRRYAEILARLDADHYKERDAVP
RLGEMLGSHPLMLERVQNVLAAE

Sequences:

>Translated_343_residues
MIDSCAAFWYDGRTSQRREVTVSLVECSLIVSGPDLERAYPLAEVRIDQRLGRVRRTLRFPDGASAETGADDFLDELLKT
QGRGGFVGRLHRWEMSLGKAGAALLLTLAVVFCLVRYGVPLLAQRVAFALPAATEEAIGRETLQILDKVALQPSALPKER
RLELERLFRAMVSQHPERRGWRLEFRASREIGANAFALPSGIVILTDRMVEIAENDHQLAGVLAHETGHVTHRHALRHLL
QNSATALVVAGLTGDIVSVSSFAATMPAVIINAKYSRDFEREADAAAVEYLKGRGIPVRRYAEILARLDADHYKERDAVP
RLGEMLGSHPLMLERVQNVLAAE
>Mature_343_residues
MIDSCAAFWYDGRTSQRREVTVSLVECSLIVSGPDLERAYPLAEVRIDQRLGRVRRTLRFPDGASAETGADDFLDELLKT
QGRGGFVGRLHRWEMSLGKAGAALLLTLAVVFCLVRYGVPLLAQRVAFALPAATEEAIGRETLQILDKVALQPSALPKER
RLELERLFRAMVSQHPERRGWRLEFRASREIGANAFALPSGIVILTDRMVEIAENDHQLAGVLAHETGHVTHRHALRHLL
QNSATALVVAGLTGDIVSVSSFAATMPAVIINAKYSRDFEREADAAAVEYLKGRGIPVRRYAEILARLDADHYKERDAVP
RLGEMLGSHPLMLERVQNVLAAE

Specific function: Unknown

COG id: COG0501

COG function: function code O; Zn-dependent protease with chaperone function

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M48B family [H]

Homologues:

Organism=Escherichia coli, GI87081800, Length=173, Percent_Identity=31.7919075144509, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001915 [H]

Pfam domain/function: PF01435 Peptidase_M48 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 37973; Mature: 37973

Theoretical pI: Translated: 7.72; Mature: 7.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDSCAAFWYDGRTSQRREVTVSLVECSLIVSGPDLERAYPLAEVRIDQRLGRVRRTLRF
CCCCHHHHEECCCCCCCHHHEEEEEEEEEEECCCCCHHHCCHHHHHHHHHHHHHHHHHCC
PDGASAETGADDFLDELLKTQGRGGFVGRLHRWEMSLGKAGAALLLTLAVVFCLVRYGVP
CCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCHH
LLAQRVAFALPAATEEAIGRETLQILDKVALQPSALPKERRLELERLFRAMVSQHPERRG
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC
WRLEFRASREIGANAFALPSGIVILTDRMVEIAENDHQLAGVLAHETGHVTHRHALRHLL
CEEEEEECCCCCCCCEECCCCEEEEHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHH
QNSATALVVAGLTGDIVSVSSFAATMPAVIINAKYSRDFEREADAAAVEYLKGRGIPVRR
HCCCCEEEEECCCCCHHHHHHHHHHHHHHEEECHHCCCHHHHHHHHHHHHHHCCCCCHHH
YAEILARLDADHYKERDAVPRLGEMLGSHPLMLERVQNVLAAE
HHHHHHHHCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MIDSCAAFWYDGRTSQRREVTVSLVECSLIVSGPDLERAYPLAEVRIDQRLGRVRRTLRF
CCCCHHHHEECCCCCCCHHHEEEEEEEEEEECCCCCHHHCCHHHHHHHHHHHHHHHHHCC
PDGASAETGADDFLDELLKTQGRGGFVGRLHRWEMSLGKAGAALLLTLAVVFCLVRYGVP
CCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCHH
LLAQRVAFALPAATEEAIGRETLQILDKVALQPSALPKERRLELERLFRAMVSQHPERRG
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC
WRLEFRASREIGANAFALPSGIVILTDRMVEIAENDHQLAGVLAHETGHVTHRHALRHLL
CEEEEEECCCCCCCCEECCCCEEEEHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHH
QNSATALVVAGLTGDIVSVSSFAATMPAVIINAKYSRDFEREADAAAVEYLKGRGIPVRR
HCCCCEEEEECCCCCHHHHHHHHHHHHHHEEECHHCCCHHHHHHHHHHHHHHCCCCCHHH
YAEILARLDADHYKERDAVPRLGEMLGSHPLMLERVQNVLAAE
HHHHHHHHCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Zn [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 7836281 [H]