| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is yjgN [H]
Identifier: 197116911
GI number: 197116911
Start: 620497
End: 621723
Strand: Direct
Name: yjgN [H]
Synonym: Gbem_0513
Alternate gene names: 197116911
Gene position: 620497-621723 (Clockwise)
Preceding gene: 197116910
Following gene: 197116912
Centisome position: 13.44
GC content: 59.41
Gene sequence:
>1227_bases ATGCCTTCAATAACTTTGACCTGCCCCGTTTGCAACTTCACAAAGCAGATGGACGTCAGCGCCATCCCGCGGCCGGGGAC AACGGTCACCTGTCCCGTATGCAAGTCCCTTTTCCCGCTGCAAACCGATGCGCAGGGAGTTGCCTCGGAAGCAGGGAATA CGCCTGCACTTCCTGAAGAGAACCAGACCCCGCCATCCTCGAAACCCGTCCGGCAAAGGCCGCGCACCCTCACTTTCGCA TTCACCGGTGATGCCAGGGAATACTTCGGCATCTGGATCGTGAACACGCTGCTGCGCATCGTCACCTTGGGCTTTTATTC TCCGTGGGCCAAGGTCCGGAAGCGGCGCTACTTTTGCGGCAACACGCTGCTCGACGGAGCGCCCTTCGATTACCTTGCGG ACCCTTGGGCCATCCTCAAGGGGTGGCTGGTCGCTGGCCTGTTTTTCGGCCTCTATTCCCTTACCTCGAGGATCAGCCCG CTCATATTCGCGGCTATCTCACTTCTTTTTCTGGGGATCTTCCCCTGGGTTGTGGTGCGGTCGCGTATCTTCAACCTCAG GAACTCCACCCACCGCAATATCCATTTCGGCTTCAACCCGGAGTACCGCGAGGCGTATCGGGTTTTCCTCGGCTGGCAGT TGCTGCTCCCGTTGACCATAGGCATCCTGGGTCCCTACGTTTTTTACCGCCAGTCCCGTTTCCTGGTGGAAAACAGCCGC TACGGCACCACTCCATTCAGCTTCCACGCCACCGCCACGGATTACTTCAAGATCTTCCTCCCCCTGCTCGTCCTGATACC TGTGGGGTTCGGTGCCGCCGTAGGGATCGGAGTCGGAGCGGGGGTGGGATTCCACAACGAGAAAGGCGCCGCAGTGGGTA TCGTCTTCCTGCTTTTCGCCCTGGTATATCTGATAGCCGGCATTTATGTCAGAACCGCTCTCACCAACCTTGCCTGGAAT TCAACCTCTCTGGGCCAGCACCGGTTCGCCTCTGCGCTCCGGGTACGCGATCTGCTTTGGATCTATCTCTCCAGCGCCGT TGCCGTCATCTGCACGCTGGGGTTGCTTGCGCCTTGGGCTGTTGTGCGCATGGTCAGGTATCGCTTGGAGCGGACCACCG TATCGGGTGTGGGCGGTTTCGATGCCATCCGGGCTTCAGAGGACCAGCAGGTAGGCGCCGGGCCTGAGGAACTGGTGGAC ATGGTGGGGTTCGACCTGGGACTATGA
Upstream 100 bases:
>100_bases GAAGTAGCTCTGCTACCCTCTGCCAACTGACCGGATACTTGCGTGAATGCAAGAACGGGCACTTCAGATCCTGTGAGTCC CGTGCATTAAAGGAAAAAGG
Downstream 100 bases:
>100_bases TCGATTCCTGCGCTGCATTCTGGTACGACGGCCGTACCTCGCAAAGGCGGGAGGTGACGGTGAGTCTCGTCGAGTGTTCT TTGATAGTGTCCGGGCCGGA
Product: membrane protein
Products: NA
Alternate protein names: ORF X [H]
Number of amino acids: Translated: 408; Mature: 407
Protein sequence:
>408_residues MPSITLTCPVCNFTKQMDVSAIPRPGTTVTCPVCKSLFPLQTDAQGVASEAGNTPALPEENQTPPSSKPVRQRPRTLTFA FTGDAREYFGIWIVNTLLRIVTLGFYSPWAKVRKRRYFCGNTLLDGAPFDYLADPWAILKGWLVAGLFFGLYSLTSRISP LIFAAISLLFLGIFPWVVVRSRIFNLRNSTHRNIHFGFNPEYREAYRVFLGWQLLLPLTIGILGPYVFYRQSRFLVENSR YGTTPFSFHATATDYFKIFLPLLVLIPVGFGAAVGIGVGAGVGFHNEKGAAVGIVFLLFALVYLIAGIYVRTALTNLAWN STSLGQHRFASALRVRDLLWIYLSSAVAVICTLGLLAPWAVVRMVRYRLERTTVSGVGGFDAIRASEDQQVGAGPEELVD MVGFDLGL
Sequences:
>Translated_408_residues MPSITLTCPVCNFTKQMDVSAIPRPGTTVTCPVCKSLFPLQTDAQGVASEAGNTPALPEENQTPPSSKPVRQRPRTLTFA FTGDAREYFGIWIVNTLLRIVTLGFYSPWAKVRKRRYFCGNTLLDGAPFDYLADPWAILKGWLVAGLFFGLYSLTSRISP LIFAAISLLFLGIFPWVVVRSRIFNLRNSTHRNIHFGFNPEYREAYRVFLGWQLLLPLTIGILGPYVFYRQSRFLVENSR YGTTPFSFHATATDYFKIFLPLLVLIPVGFGAAVGIGVGAGVGFHNEKGAAVGIVFLLFALVYLIAGIYVRTALTNLAWN STSLGQHRFASALRVRDLLWIYLSSAVAVICTLGLLAPWAVVRMVRYRLERTTVSGVGGFDAIRASEDQQVGAGPEELVD MVGFDLGL >Mature_407_residues PSITLTCPVCNFTKQMDVSAIPRPGTTVTCPVCKSLFPLQTDAQGVASEAGNTPALPEENQTPPSSKPVRQRPRTLTFAF TGDAREYFGIWIVNTLLRIVTLGFYSPWAKVRKRRYFCGNTLLDGAPFDYLADPWAILKGWLVAGLFFGLYSLTSRISPL IFAAISLLFLGIFPWVVVRSRIFNLRNSTHRNIHFGFNPEYREAYRVFLGWQLLLPLTIGILGPYVFYRQSRFLVENSRY GTTPFSFHATATDYFKIFLPLLVLIPVGFGAAVGIGVGAGVGFHNEKGAAVGIVFLLFALVYLIAGIYVRTALTNLAWNS TSLGQHRFASALRVRDLLWIYLSSAVAVICTLGLLAPWAVVRMVRYRLERTTVSGVGGFDAIRASEDQQVGAGPEELVDM VGFDLGL
Specific function: Unknown
COG id: COG4269
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010295 [H]
Pfam domain/function: PF05987 DUF898 [H]
EC number: NA
Molecular weight: Translated: 45113; Mature: 44982
Theoretical pI: Translated: 9.76; Mature: 9.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPSITLTCPVCNFTKQMDVSAIPRPGTTVTCPVCKSLFPLQTDAQGVASEAGNTPALPEE CCCEEEECCCCCCHHHCCCCCCCCCCCEEEHHHHHHHCCCCCCHHHHHHHCCCCCCCCCC NQTPPSSKPVRQRPRTLTFAFTGDAREYFGIWIVNTLLRIVTLGFYSPWAKVRKRRYFCG CCCCCCCCCHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC NTLLDGAPFDYLADPWAILKGWLVAGLFFGLYSLTSRISPLIFAAISLLFLGIFPWVVVR CCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SRIFNLRNSTHRNIHFGFNPEYREAYRVFLGWQLLLPLTIGILGPYVFYRQSRFLVENSR HHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEECCC YGTTPFSFHATATDYFKIFLPLLVLIPVGFGAAVGIGVGAGVGFHNEKGAAVGIVFLLFA CCCCCCEEECCHHHHHHHHHHHHHHHHCCCHHHHHCCHHCCCCCCCCCCHHHHHHHHHHH LVYLIAGIYVRTALTNLAWNSTSLGQHRFASALRVRDLLWIYLSSAVAVICTLGLLAPWA HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VVRMVRYRLERTTVSGVGGFDAIRASEDQQVGAGPEELVDMVGFDLGL HHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHCCC >Mature Secondary Structure PSITLTCPVCNFTKQMDVSAIPRPGTTVTCPVCKSLFPLQTDAQGVASEAGNTPALPEE CCEEEECCCCCCHHHCCCCCCCCCCCEEEHHHHHHHCCCCCCHHHHHHHCCCCCCCCCC NQTPPSSKPVRQRPRTLTFAFTGDAREYFGIWIVNTLLRIVTLGFYSPWAKVRKRRYFCG CCCCCCCCCHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC NTLLDGAPFDYLADPWAILKGWLVAGLFFGLYSLTSRISPLIFAAISLLFLGIFPWVVVR CCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SRIFNLRNSTHRNIHFGFNPEYREAYRVFLGWQLLLPLTIGILGPYVFYRQSRFLVENSR HHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEECCC YGTTPFSFHATATDYFKIFLPLLVLIPVGFGAAVGIGVGAGVGFHNEKGAAVGIVFLLFA CCCCCCEEECCHHHHHHHHHHHHHHHHCCCHHHHHCCHHCCCCCCCCCCHHHHHHHHHHH LVYLIAGIYVRTALTNLAWNSTSLGQHRFASALRVRDLLWIYLSSAVAVICTLGLLAPWA HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VVRMVRYRLERTTVSGVGGFDAIRASEDQQVGAGPEELVDMVGFDLGL HHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11677609; 8253666 [H]