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The map label for this gene is rlmL [C]

Identifier: 197116875

GI number: 197116875

Start: 577189

End: 578319

Strand: Direct

Name: rlmL [C]

Synonym: Gbem_0477

Alternate gene names: 197116875

Gene position: 577189-578319 (Clockwise)

Preceding gene: 197116873

Following gene: 197116876

Centisome position: 12.51

GC content: 65.87

Gene sequence:

>1131_bases
ATGGATCAGGAGCGTTTTTTCGCCACCACTGCAAAAGGGGTGGAAGAGGTTCTCGCTGCCGAGTTGACGCGGCTGGGTGC
AAGCGACGTGGCGGTCGACAGCGGCGGGGTCCGTTTCGGCGGGGGGATGGAAGCGGTCTACCGCGCCAACCTCTGGCTCA
GGAGCGCGAGCCGCGTGCTGATGCCTCTGGGGGAGTTCCCTTGCGAGACGCCGGAGCAGCTCTACCAGGGGGTGCGGGGG
CTGTCTTGGGTCAACTATTTGACGCCGGCCATGACGCTTGCGGTCGACTGCAGCCTGAGGGATTCGGCGCTCACCCATTC
CGGATTCGTGGCGCTGAAGGCGAAAGACGCCATCGTGGACGTTTTGCGGGACCATTTCGGCAGCCGCCCCAATGTCGACA
CCAAGGACCCTGACCTGCGGGTGAACCTGCGGCTGTTCCGCAACCGCTGCACGGTGAGTCTCGACTGCTCAGGTACGCCG
CTGGACCGGCGCGGCTACCGCTTGGACCGGCACGAGGCACCGCTCAAGGAGAACCTGGCCGCAGCCCTGGTCGAGCTTTC
CGGGTGGGACGCAACCACGCCGCTCATCGACCCCATGTGCGGCACCGGCACCATCGTCATCGAAGCGGCCATGAAGGCGC
TGCGCATCCCCCCCGGCCTGTCGCGCCAGGGGTTCGGCTTCCAGCGCTGGAGAGGGTTCGACCGCGCGCTCTGGGAGCGC
GTCGTCTCCGAGGCGCGCAGCGGCATGCTCACCTCTCTTCCCGCTCCGGTGCAGGGGACGGACATCTCGCATTCCGCCGT
GGGGATGGCCGCCCAAAACGCCAAACGTGCCGGCGTCCTGGAGCAGATCTCCCTGGGGCGGCAGCAGCTCTCCGAACTCG
CCCCTCCGCCGGGGCCGGGCGTCATCATCATGAATCCCCCCTACGGCAAGAGGCTGGGGGAGGAAGAAGCGCTCCGGCCG
CTCTACAAGGAGATCGGCGACGTGCTGAAAAAGCGCTGCAAGGGGTATACGGCCTACCTCTTCACCGGCAATCTCGAACT
TGCCAAGGGGGTGGGGTTGAAGGCAACCAGGCGCATAGTGCTCTACAACGGGCCGATCGAGTGCAGGCTGCTCAAGTACG
AGATGTATTAG

Upstream 100 bases:

>100_bases
TTGATGAAAATTTATCAAGCAAATGACGTGCCACCTCTCAGAGGGCGGAGTAGGGCAGTGTTGCCTCCGTTGCAGAAATG
GCAGCATTCGAGGAGTTCAG

Downstream 100 bases:

>100_bases
GAAAAGCGGCGGTGATCATTATAAATTGAGGCTTGACACGTTAATCCTTTTACTATATGTTGAAATTTCGCTTTTCGGGC
CTATAGCTCAGTTGGTTAGA

Product: 23S rRNA (2-N-methyl-G2445)-methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 376; Mature: 376

Protein sequence:

>376_residues
MDQERFFATTAKGVEEVLAAELTRLGASDVAVDSGGVRFGGGMEAVYRANLWLRSASRVLMPLGEFPCETPEQLYQGVRG
LSWVNYLTPAMTLAVDCSLRDSALTHSGFVALKAKDAIVDVLRDHFGSRPNVDTKDPDLRVNLRLFRNRCTVSLDCSGTP
LDRRGYRLDRHEAPLKENLAAALVELSGWDATTPLIDPMCGTGTIVIEAAMKALRIPPGLSRQGFGFQRWRGFDRALWER
VVSEARSGMLTSLPAPVQGTDISHSAVGMAAQNAKRAGVLEQISLGRQQLSELAPPPGPGVIIMNPPYGKRLGEEEALRP
LYKEIGDVLKKRCKGYTAYLFTGNLELAKGVGLKATRRIVLYNGPIECRLLKYEMY

Sequences:

>Translated_376_residues
MDQERFFATTAKGVEEVLAAELTRLGASDVAVDSGGVRFGGGMEAVYRANLWLRSASRVLMPLGEFPCETPEQLYQGVRG
LSWVNYLTPAMTLAVDCSLRDSALTHSGFVALKAKDAIVDVLRDHFGSRPNVDTKDPDLRVNLRLFRNRCTVSLDCSGTP
LDRRGYRLDRHEAPLKENLAAALVELSGWDATTPLIDPMCGTGTIVIEAAMKALRIPPGLSRQGFGFQRWRGFDRALWER
VVSEARSGMLTSLPAPVQGTDISHSAVGMAAQNAKRAGVLEQISLGRQQLSELAPPPGPGVIIMNPPYGKRLGEEEALRP
LYKEIGDVLKKRCKGYTAYLFTGNLELAKGVGLKATRRIVLYNGPIECRLLKYEMY
>Mature_376_residues
MDQERFFATTAKGVEEVLAAELTRLGASDVAVDSGGVRFGGGMEAVYRANLWLRSASRVLMPLGEFPCETPEQLYQGVRG
LSWVNYLTPAMTLAVDCSLRDSALTHSGFVALKAKDAIVDVLRDHFGSRPNVDTKDPDLRVNLRLFRNRCTVSLDCSGTP
LDRRGYRLDRHEAPLKENLAAALVELSGWDATTPLIDPMCGTGTIVIEAAMKALRIPPGLSRQGFGFQRWRGFDRALWER
VVSEARSGMLTSLPAPVQGTDISHSAVGMAAQNAKRAGVLEQISLGRQQLSELAPPPGPGVIIMNPPYGKRLGEEEALRP
LYKEIGDVLKKRCKGYTAYLFTGNLELAKGVGLKATRRIVLYNGPIECRLLKYEMY

Specific function: Unknown

COG id: COG0116

COG function: function code L; Predicted N6-adenine-specific DNA methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 THUMP domain [H]

Homologues:

Organism=Escherichia coli, GI1787181, Length=376, Percent_Identity=39.6276595744681, Blast_Score=253, Evalue=1e-68,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002052
- InterPro:   IPR002296
- InterPro:   IPR000241
- InterPro:   IPR004114 [H]

Pfam domain/function: PF02926 THUMP; PF01170 UPF0020 [H]

EC number: NA

Molecular weight: Translated: 41253; Mature: 41253

Theoretical pI: Translated: 8.81; Mature: 8.81

Prosite motif: PS51165 THUMP ; PS00092 N6_MTASE ; PS01261 UPF0020

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDQERFFATTAKGVEEVLAAELTRLGASDVAVDSGGVRFGGGMEAVYRANLWLRSASRVL
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCEEECCCHHHHHHHHHHHHHHHHHH
MPLGEFPCETPEQLYQGVRGLSWVNYLTPAMTLAVDCSLRDSALTHSGFVALKAKDAIVD
HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCEEEEEHHHHHHH
VLRDHFGSRPNVDTKDPDLRVNLRLFRNRCTVSLDCSGTPLDRRGYRLDRHEAPLKENLA
HHHHHCCCCCCCCCCCCCEEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHH
AALVELSGWDATTPLIDPMCGTGTIVIEAAMKALRIPPGLSRQGFGFQRWRGFDRALWER
HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHCCHHHHHHHH
VVSEARSGMLTSLPAPVQGTDISHSAVGMAAQNAKRAGVLEQISLGRQQLSELAPPPGPG
HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
VIIMNPPYGKRLGEEEALRPLYKEIGDVLKKRCKGYTAYLFTGNLELAKGVGLKATRRIV
EEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCHHHCCCCCCCEEEEE
LYNGPIECRLLKYEMY
EECCCCEEEEEEEECC
>Mature Secondary Structure
MDQERFFATTAKGVEEVLAAELTRLGASDVAVDSGGVRFGGGMEAVYRANLWLRSASRVL
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCEEECCCHHHHHHHHHHHHHHHHHH
MPLGEFPCETPEQLYQGVRGLSWVNYLTPAMTLAVDCSLRDSALTHSGFVALKAKDAIVD
HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCEEEEEHHHHHHH
VLRDHFGSRPNVDTKDPDLRVNLRLFRNRCTVSLDCSGTPLDRRGYRLDRHEAPLKENLA
HHHHHCCCCCCCCCCCCCEEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHH
AALVELSGWDATTPLIDPMCGTGTIVIEAAMKALRIPPGLSRQGFGFQRWRGFDRALWER
HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHCCHHHHHHHH
VVSEARSGMLTSLPAPVQGTDISHSAVGMAAQNAKRAGVLEQISLGRQQLSELAPPPGPG
HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
VIIMNPPYGKRLGEEEALRPLYKEIGDVLKKRCKGYTAYLFTGNLELAKGVGLKATRRIV
EEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCHHHCCCCCCCEEEEE
LYNGPIECRLLKYEMY
EECCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]