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The map label for this gene is yfiO [C]

Identifier: 197116873

GI number: 197116873

Start: 574767

End: 575537

Strand: Direct

Name: yfiO [C]

Synonym: Gbem_0475

Alternate gene names: 197116873

Gene position: 574767-575537 (Clockwise)

Preceding gene: 197116872

Following gene: 197116875

Centisome position: 12.45

GC content: 60.31

Gene sequence:

>771_bases
ATGCAGCTTCGACCCCTGCGTCACCTTGCCCTTTGCTCTGCACTTTGCCTGATCAGTGCCTGCGCCTCGACCCCCGCACC
GGTTAAAAGCGCGGACGCCCATTTCAAGGAAGGCGAGGCCGCCTACGCCTCGCGCAACTACGCCGAGGCGATCGAGAGTT
GGAAGAAGGTGAAGGAGAGCGACACCGCCCCGGGGTTGACCAGCCAGGCGGAGCTGAAGATCGCCGACGCCCATTTCGAA
AACAAGGCATACATCGAGGCGGCGGCAGCCTATGAAGACTTCCGCAAACTCCACCCGACCCACCCCCAGGCACCTTACGC
GCTTTACCGGCTTGCCTTGAGCCACTACCAGCAGATAACCGGCACCGATACGGACCAGACCCCGGTGAAAAACGCGGTGG
CGACCCTGGAGGCTTTTCTGGGGCAATACCCGCGGTCGGAATATGCCCCCGAACTCTCTGGAAAGCTTGCCGACTGCCGC
GACAAACAGCTCGCCTACGAAAACTACGTAGGGAACTTCTACCTGAGGACCGAGAAATACCAGTCGGCGATCAAACGGCT
GAACGAGGCGCTGGTGCGTTTCCCTGGACTGACCAGGCTGGACGACACCCTTTTTTATCTGGGGAAGGCATATCTTAAGG
CGGGTGATGTGAAGCAGGGGAAGGTCGTTTTACAGAGGCTGGCCGCCGAGCATCCGGGAAGCCCCAGGAACAAGGAAGCT
GCCGCACTGCTGCAGAAAGGCTTCGCCGACTACTCCTCTCACGGGGTGTAG

Upstream 100 bases:

>100_bases
AGCGCGCCAACCGCAGCTAGAGAAAAATAGGTCCCCGGGGCACGAGCCGTCCCGGGGACCTTTGTCGCTGGGCCACCACC
ACCTGGAAAGGAGTCACCTC

Downstream 100 bases:

>100_bases
CCGGGCAGGTTCGGTCGCAGTGAAGCGGGGAGCGGCGATTCGCCTCAGACGCTTATGTGGCGCTGCCTGAAGTGGGGAGT
GCCGGCGCTGCGCCCTTTTT

Product: outer membrane protein assembly lipoprotein YfiO

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 256; Mature: 256

Protein sequence:

>256_residues
MQLRPLRHLALCSALCLISACASTPAPVKSADAHFKEGEAAYASRNYAEAIESWKKVKESDTAPGLTSQAELKIADAHFE
NKAYIEAAAAYEDFRKLHPTHPQAPYALYRLALSHYQQITGTDTDQTPVKNAVATLEAFLGQYPRSEYAPELSGKLADCR
DKQLAYENYVGNFYLRTEKYQSAIKRLNEALVRFPGLTRLDDTLFYLGKAYLKAGDVKQGKVVLQRLAAEHPGSPRNKEA
AALLQKGFADYSSHGV

Sequences:

>Translated_256_residues
MQLRPLRHLALCSALCLISACASTPAPVKSADAHFKEGEAAYASRNYAEAIESWKKVKESDTAPGLTSQAELKIADAHFE
NKAYIEAAAAYEDFRKLHPTHPQAPYALYRLALSHYQQITGTDTDQTPVKNAVATLEAFLGQYPRSEYAPELSGKLADCR
DKQLAYENYVGNFYLRTEKYQSAIKRLNEALVRFPGLTRLDDTLFYLGKAYLKAGDVKQGKVVLQRLAAEHPGSPRNKEA
AALLQKGFADYSSHGV
>Mature_256_residues
MQLRPLRHLALCSALCLISACASTPAPVKSADAHFKEGEAAYASRNYAEAIESWKKVKESDTAPGLTSQAELKIADAHFE
NKAYIEAAAAYEDFRKLHPTHPQAPYALYRLALSHYQQITGTDTDQTPVKNAVATLEAFLGQYPRSEYAPELSGKLADCR
DKQLAYENYVGNFYLRTEKYQSAIKRLNEALVRFPGLTRLDDTLFYLGKAYLKAGDVKQGKVVLQRLAAEHPGSPRNKEA
AALLQKGFADYSSHGV

Specific function: Unknown

COG id: COG4105

COG function: function code R; DNA uptake lipoprotein

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 TPR repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017689
- InterPro:   IPR013026
- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28330; Mature: 28330

Theoretical pI: Translated: 8.54; Mature: 8.54

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLRPLRHLALCSALCLISACASTPAPVKSADAHFKEGEAAYASRNYAEAIESWKKVKES
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHC
DTAPGLTSQAELKIADAHFENKAYIEAAAAYEDFRKLHPTHPQAPYALYRLALSHYQQIT
CCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHC
GTDTDQTPVKNAVATLEAFLGQYPRSEYAPELSGKLADCRDKQLAYENYVGNFYLRTEKY
CCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCEEEHHHH
QSAIKRLNEALVRFPGLTRLDDTLFYLGKAYLKAGDVKQGKVVLQRLAAEHPGSPRNKEA
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHH
AALLQKGFADYSSHGV
HHHHHHHHHHHHCCCC
>Mature Secondary Structure
MQLRPLRHLALCSALCLISACASTPAPVKSADAHFKEGEAAYASRNYAEAIESWKKVKES
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHC
DTAPGLTSQAELKIADAHFENKAYIEAAAAYEDFRKLHPTHPQAPYALYRLALSHYQQIT
CCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHC
GTDTDQTPVKNAVATLEAFLGQYPRSEYAPELSGKLADCRDKQLAYENYVGNFYLRTEKY
CCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCEEEHHHH
QSAIKRLNEALVRFPGLTRLDDTLFYLGKAYLKAGDVKQGKVVLQRLAAEHPGSPRNKEA
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHH
AALLQKGFADYSSHGV
HHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11214968 [H]