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The map label for this gene is yddU [C]

Identifier: 197116864

GI number: 197116864

Start: 560086

End: 560529

Strand: Reverse

Name: yddU [C]

Synonym: Gbem_0466

Alternate gene names: 197116864

Gene position: 560529-560086 (Counterclockwise)

Preceding gene: 197116868

Following gene: 197116854

Centisome position: 12.15

GC content: 61.49

Gene sequence:

>444_bases
ATGAATGAATTACAGGACGATGAACTGCACCGGCAACTGGTGCAAGAGTGCAACGACGCCATCATCTTCTCCGACCGGCA
GGGGGTAATCAGGCTCTGGAACAAGGGAGCCGAGCGGATGCTGGGGTTCACTGCGGAGGAGGCGATCGGCCGCTCGCTGG
ACATCTTCATCCCGGAGAACCAGCGCGCCCGCCACTGGGAAGGGTACTTCAGGGTGATGGAGACCGGCTACACCCACTAT
CAGACCGATCTCCTCGCGGCCCCCGCCCTGCGCAAGGACGGTACCCGCATTTCGTCGGAATTCTCCATGACCATCATCAG
GGACGCAGACGGCCGGGTTGCCGGGACCGCAGCGGTGATGCGGGACGTAACTGCCAAGTGGCAAAAGGAAAAGTCGCTGC
GGGCGAGGGTTGCGGAGCTGGAAAAGGAATTGGGCCAGAGCTGA

Upstream 100 bases:

>100_bases
TTTTTCATACAGACGCTGCAATTTTCCGCTATTTGACCTGAATCAAGGCCTGTCAGTGCAAGTGATGATATGCTCTTATA
AAAGCACGCGGAGGTGTTCC

Downstream 100 bases:

>100_bases
GGCCGGTACAACACGTTTTGAGCCATCAACAAAGAAAGGGCTCCGGGGTTTGACTCCGGAGCCCTTTTCACGACCGAGAT
GGTAAGGAGGTGCGTCTTCA

Product: PAS sensor protein

Products: NA

Alternate protein names: PAS Sensor Protein; Sensor Histidine Kinase; Sensory Transduction Histidine Kinase; PAS/PAC Sensor Signal Transduction Histidine Kinase; PAS/PAC Sensor Hybrid Histidine Kinase; Sensory Box Protein; Two-Component Hybrid Sensor And Regulator; Multi-Sensor Hybrid Histidine Kinase; Transcriptional Regulator; Signal-Transducing Histidine Kinase; Signal Transduction Histidine Kinase; Multi-Sensor Signal Transduction Histidine Kinase; Two-Component Sensor Histidine Kinase Protein; PAS/PAC Domain-Containing Protein; Two-Component Sensor Histidine Kinase; Two Component Sensor Kinase; Hybrid Sensor Histidine Kinase; PAS Sensor Signal Transduction Histidine Kinase; Response Sensor Protein; Chemotaxis Methyltransferase Protein; Ethylene Response Sensor Protein; Two-Component System Sensory/Regulatory Protein Putative; Signal Transduction Protein; Signal Sensor Protein Isolated PAS Domain; Sensor Histidine Kinase Of Two-Component; Globin

Number of amino acids: Translated: 147; Mature: 147

Protein sequence:

>147_residues
MNELQDDELHRQLVQECNDAIIFSDRQGVIRLWNKGAERMLGFTAEEAIGRSLDIFIPENQRARHWEGYFRVMETGYTHY
QTDLLAAPALRKDGTRISSEFSMTIIRDADGRVAGTAAVMRDVTAKWQKEKSLRARVAELEKELGQS

Sequences:

>Translated_147_residues
MNELQDDELHRQLVQECNDAIIFSDRQGVIRLWNKGAERMLGFTAEEAIGRSLDIFIPENQRARHWEGYFRVMETGYTHY
QTDLLAAPALRKDGTRISSEFSMTIIRDADGRVAGTAAVMRDVTAKWQKEKSLRARVAELEKELGQS
>Mature_147_residues
MNELQDDELHRQLVQECNDAIIFSDRQGVIRLWNKGAERMLGFTAEEAIGRSLDIFIPENQRARHWEGYFRVMETGYTHY
QTDLLAAPALRKDGTRISSEFSMTIIRDADGRVAGTAAVMRDVTAKWQKEKSLRARVAELEKELGQS

Specific function: Unknown

COG id: COG2202

COG function: function code T; FOG: PAS/PAC domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16844; Mature: 16844

Theoretical pI: Translated: 5.75; Mature: 5.75

Prosite motif: PS50112 PAS ; PS50113 PAC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNELQDDELHRQLVQECNDAIIFSDRQGVIRLWNKGAERMLGFTAEEAIGRSLDIFIPEN
CCCCCHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHCCCHHHHCCCEEEEEECCC
QRARHWEGYFRVMETGYTHYQTDLLAAPALRKDGTRISSEFSMTIIRDADGRVAGTAAVM
CCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHCCCCCCCCCEEEEEEECCCCCCHHHHHHH
RDVTAKWQKEKSLRARVAELEKELGQS
HHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNELQDDELHRQLVQECNDAIIFSDRQGVIRLWNKGAERMLGFTAEEAIGRSLDIFIPEN
CCCCCHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHCCCHHHHCCCEEEEEECCC
QRARHWEGYFRVMETGYTHYQTDLLAAPALRKDGTRISSEFSMTIIRDADGRVAGTAAVM
CCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHCCCCCCCCCEEEEEEECCCCCCHHHHHHH
RDVTAKWQKEKSLRARVAELEKELGQS
HHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA