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The map label for this gene is ydjX [C]

Identifier: 197116856

GI number: 197116856

Start: 551515

End: 552189

Strand: Direct

Name: ydjX [C]

Synonym: Gbem_0458

Alternate gene names: 197116856

Gene position: 551515-552189 (Clockwise)

Preceding gene: 197116855

Following gene: 197116857

Centisome position: 11.95

GC content: 62.37

Gene sequence:

>675_bases
ATGAACCTGAAAAAGATCCTCATACTTGTCGCTGCCGTCATCGCAGTGGCGCTCTTCTTCTACCTCGACCTCGGCCGTTA
CCTGACCCTGGAGTCGCTCAAGGCCAACCGGCAGGCGCTCATCCAGTACTACGCGGCGCACCAGGCCGCCACCGTCGCCG
GGTTCATGGCACTTTACATCCTGCAGACGGCGCTCTCGCTTCCCGGTGCAGCCATTCTGTCGCTCGCGGCAGGCGCCATC
TTCGGCTCCCTCGCCGGGACCTTCTACGCCGTCATGGCCGCAACAGTCGGAGCGACGCTCGCTTTCGTGGTGACACGCTA
CCTGCTGCGCGACCTCGTGCTCGACAAGTTCGGACCGAAACTGGAGGGGCTCAACCGGGAGCTGGAAACGCGCGGTTTCA
ATTACCTGCTCTTTCTGAGGCTGGTGCCGCTGTTTCCCTTTTTCCTCATCAACCTCGCGGCCGGCCTCACCCGGCTGCCG
CTACGCGTCTTCGTCCCTGGGACGCTTATCGGGATCATCCCGGGAGGGTTCGTCTTCGTGAATGCCGGGGCGAGCCTCGC
CACCATCAACTCCCTCTCCGACGTCGCCTCTCCCCGGGTGCTCGGTTCTTTCGCGCTCCTCGGGCTCTTCGCACTAGTCC
CGGTGATCTACGGGAAGATTAAAAAGAACGCCTAA

Upstream 100 bases:

>100_bases
AAAAATCACTTCTCAGTGTACGTAGATCATCTACCGATAATTCTTTCTCTTAGTCTTAATCTCAATCTCAATCTTTATCT
GCAGTTAGGAGCCGCTCCGC

Downstream 100 bases:

>100_bases
CTCCCCCACTCCCGCGCTTCTAATAATCTCATTCATTAGCCCCGTGCCCCTTGCGGGGGCGGGGTCGAAAGTCCCTCCTT
TTTTTAAACTCGTTTTTGAC

Product: membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 224

Protein sequence:

>224_residues
MNLKKILILVAAVIAVALFFYLDLGRYLTLESLKANRQALIQYYAAHQAATVAGFMALYILQTALSLPGAAILSLAAGAI
FGSLAGTFYAVMAATVGATLAFVVTRYLLRDLVLDKFGPKLEGLNRELETRGFNYLLFLRLVPLFPFFLINLAAGLTRLP
LRVFVPGTLIGIIPGGFVFVNAGASLATINSLSDVASPRVLGSFALLGLFALVPVIYGKIKKNA

Sequences:

>Translated_224_residues
MNLKKILILVAAVIAVALFFYLDLGRYLTLESLKANRQALIQYYAAHQAATVAGFMALYILQTALSLPGAAILSLAAGAI
FGSLAGTFYAVMAATVGATLAFVVTRYLLRDLVLDKFGPKLEGLNRELETRGFNYLLFLRLVPLFPFFLINLAAGLTRLP
LRVFVPGTLIGIIPGGFVFVNAGASLATINSLSDVASPRVLGSFALLGLFALVPVIYGKIKKNA
>Mature_224_residues
MNLKKILILVAAVIAVALFFYLDLGRYLTLESLKANRQALIQYYAAHQAATVAGFMALYILQTALSLPGAAILSLAAGAI
FGSLAGTFYAVMAATVGATLAFVVTRYLLRDLVLDKFGPKLEGLNRELETRGFNYLLFLRLVPLFPFFLINLAAGLTRLP
LRVFVPGTLIGIIPGGFVFVNAGASLATINSLSDVASPRVLGSFALLGLFALVPVIYGKIKKNA

Specific function: Unknown

COG id: COG0398

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TVP38/TMEM64 family [H]

Homologues:

Organism=Homo sapiens, GI18087813, Length=188, Percent_Identity=30.8510638297872, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI66392190, Length=197, Percent_Identity=23.8578680203046, Blast_Score=78, Evalue=6e-15,
Organism=Escherichia coli, GI87081964, Length=139, Percent_Identity=35.2517985611511, Blast_Score=76, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI115533785, Length=172, Percent_Identity=32.5581395348837, Blast_Score=87, Evalue=9e-18,
Organism=Caenorhabditis elegans, GI17532687, Length=168, Percent_Identity=25.5952380952381, Blast_Score=84, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI115533280, Length=179, Percent_Identity=29.608938547486, Blast_Score=84, Evalue=5e-17,
Organism=Drosophila melanogaster, GI18859941, Length=164, Percent_Identity=27.4390243902439, Blast_Score=77, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 23943; Mature: 23943

Theoretical pI: Translated: 10.48; Mature: 10.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLKKILILVAAVIAVALFFYLDLGRYLTLESLKANRQALIQYYAAHQAATVAGFMALYI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LQTALSLPGAAILSLAAGAIFGSLAGTFYAVMAATVGATLAFVVTRYLLRDLVLDKFGPK
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
LEGLNRELETRGFNYLLFLRLVPLFPFFLINLAAGLTRLPLRVFVPGTLIGIIPGGFVFV
HHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEECCHHHHHHCCCCEEEE
NAGASLATINSLSDVASPRVLGSFALLGLFALVPVIYGKIKKNA
ECCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNLKKILILVAAVIAVALFFYLDLGRYLTLESLKANRQALIQYYAAHQAATVAGFMALYI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LQTALSLPGAAILSLAAGAIFGSLAGTFYAVMAATVGATLAFVVTRYLLRDLVLDKFGPK
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
LEGLNRELETRGFNYLLFLRLVPLFPFFLINLAAGLTRLPLRVFVPGTLIGIIPGGFVFV
HHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEECCHHHHHHCCCCEEEE
NAGASLATINSLSDVASPRVLGSFALLGLFALVPVIYGKIKKNA
ECCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]