| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
Click here to switch to the map view.
The map label for this gene is merA [H]
Identifier: 197116855
GI number: 197116855
Start: 549832
End: 551355
Strand: Direct
Name: merA [H]
Synonym: Gbem_0457
Alternate gene names: 197116855
Gene position: 549832-551355 (Clockwise)
Preceding gene: 308535164
Following gene: 197116856
Centisome position: 11.91
GC content: 66.08
Gene sequence:
>1524_bases ATGAGCGACCAATTTGTGTTTCAGCCGGACACGGCGGAGAACAGGGAACTTGAGGCCAACGTGTGCCCGAAAAGTTGGAT CAACCCGGTGCCATCGGGACGTTACAACCTGGTGGTGGTCGGCGCCGGGACCGCGGGCCTTGTCTGCGCCGCTGGGGCGG CTTCGTTGGGGGCGCGCGTGGCTCTGGTCGAGCGGCTGGCTCTCGGGGGAGACTGCCTGAACGTCGGCTGCGTCCCGTCG AAAGCGCTGATCCGTGCCTCGCGTGCCGTCTTCGATGCCCGTCATAGCGGCGGCTTCGGCGTAGTCGGGGGCGACGCGCT GCTGGCCGATTTTGCCGCGGCGCTGCAGCGGATGCGCAGGTTGAGGGCCGGGATCAGCCGCCACGACTCGGCGCTCCGCT TCCGGGATGAGTTGGGTGTCGACGTCTACCTGGGACAAGGGACCTTCACCGCCCCGGACACCCTCCAAGTCGAAGGGGCC GCGCTCCATTTCGCCAAGGCTGCGCTCTGCACCGGCGCCCGGGCGGCCATCCCCCCGGTTCCGGGTCTGGAGGAGGCGGG ATGCCTGACCAACGAGACGGTCTTCTCGCTCACCTCGCTTCCCGCCAGGCTTGCGGTGATTGGTTCGGGCCCCGTCGGTT GCGAGCTGGCGCAGGCCTTCGCCCGTTTCGGAAGCAAGGTGACCCTGGTCGAGCGGGGATCTGGGATTCTGGGGCGCGAG GACCGCGATGCGGCCGCTATCCTCGAAACGGCTTTCCGGCGTGAGGGGATCGAACTGGAACTCGGGGCGAAGCTCGTCAG GGCCTGGAGCAGCGGCTCGGAAAAACGGCTTCTCCTGGAGCGGGACGGGGTAGGGTTCGAGATTGCCGTCGACGCCATTC TGGTCGGAGCGGGGCGCGCGCCCAACACCGAGGGGCTGGGGCTCGAGGCCGCGGGAGTGGAATACGACAAGAGCGGGGTC AAGGTGAACGATTACCTGCAGACCACCAACCGGCGCATCTATGCCGCCGGAGACATCTGCTCCGGCTACAAGTTCACCCA CGTAGCCGACGCGCAGGCGAGGATAGTGATAGAAAACTCTCTTTTTCCGGGGAGGAGGAAGAACTCCAGCCTGACCGTGC CGTGGTGCACCTATACCGACCCCGAGGTGGCGCATGTCGGGATGTACCAAGCGGACGCCCTGGCGCGCGGGTTGAAGGTC GAGACCCTCACCATCCCCTTTGGCGATGTGGATCGTGCCGTCCTGGACGGGGAGAGCGAAGGGTTTGCGCGGGTGCACCT GAAAAAAGGGAGCGACGTCATCCTGGGCGCCACCATAGTCGCGCGCCACGCGGGGGAGATGATCGGCGAGGTCGCCCTTG CCATAAACGCCGGCTTGGGGCTCTCCGCCATAGGGCGCACCATCCATCCCTACCCCACTCAGGCGGAGAGCCTCAGAAAG CTTGCCGACAGCTACAACCGCGGCAGGTTGACCCCGCGAGTCAAGAAGCTGATGGGGGCATGGCTTCGCTGGCAAAGGGA ATAA
Upstream 100 bases:
>100_bases TGAATTATCCTCGCCTAAGTTGCTGCTTTGCCCATGCGAGCGGCTACTGTATCTTCACTATGTTAATGCATTGAGGAAAA CCTTGCAAAGGATGACTGCG
Downstream 100 bases:
>100_bases AAACCAGATAAAGATAAAGTGAGATTAAGATTAAGATTGAGATTGAGATTGAGATTGAGAAAAATCACTTCTCAGTGTAC GTAGATCATCTACCGATAAT
Product: mercuric reductase
Products: NA
Alternate protein names: Hg(II) reductase [H]
Number of amino acids: Translated: 507; Mature: 506
Protein sequence:
>507_residues MSDQFVFQPDTAENRELEANVCPKSWINPVPSGRYNLVVVGAGTAGLVCAAGAASLGARVALVERLALGGDCLNVGCVPS KALIRASRAVFDARHSGGFGVVGGDALLADFAAALQRMRRLRAGISRHDSALRFRDELGVDVYLGQGTFTAPDTLQVEGA ALHFAKAALCTGARAAIPPVPGLEEAGCLTNETVFSLTSLPARLAVIGSGPVGCELAQAFARFGSKVTLVERGSGILGRE DRDAAAILETAFRREGIELELGAKLVRAWSSGSEKRLLLERDGVGFEIAVDAILVGAGRAPNTEGLGLEAAGVEYDKSGV KVNDYLQTTNRRIYAAGDICSGYKFTHVADAQARIVIENSLFPGRRKNSSLTVPWCTYTDPEVAHVGMYQADALARGLKV ETLTIPFGDVDRAVLDGESEGFARVHLKKGSDVILGATIVARHAGEMIGEVALAINAGLGLSAIGRTIHPYPTQAESLRK LADSYNRGRLTPRVKKLMGAWLRWQRE
Sequences:
>Translated_507_residues MSDQFVFQPDTAENRELEANVCPKSWINPVPSGRYNLVVVGAGTAGLVCAAGAASLGARVALVERLALGGDCLNVGCVPS KALIRASRAVFDARHSGGFGVVGGDALLADFAAALQRMRRLRAGISRHDSALRFRDELGVDVYLGQGTFTAPDTLQVEGA ALHFAKAALCTGARAAIPPVPGLEEAGCLTNETVFSLTSLPARLAVIGSGPVGCELAQAFARFGSKVTLVERGSGILGRE DRDAAAILETAFRREGIELELGAKLVRAWSSGSEKRLLLERDGVGFEIAVDAILVGAGRAPNTEGLGLEAAGVEYDKSGV KVNDYLQTTNRRIYAAGDICSGYKFTHVADAQARIVIENSLFPGRRKNSSLTVPWCTYTDPEVAHVGMYQADALARGLKV ETLTIPFGDVDRAVLDGESEGFARVHLKKGSDVILGATIVARHAGEMIGEVALAINAGLGLSAIGRTIHPYPTQAESLRK LADSYNRGRLTPRVKKLMGAWLRWQRE >Mature_506_residues SDQFVFQPDTAENRELEANVCPKSWINPVPSGRYNLVVVGAGTAGLVCAAGAASLGARVALVERLALGGDCLNVGCVPSK ALIRASRAVFDARHSGGFGVVGGDALLADFAAALQRMRRLRAGISRHDSALRFRDELGVDVYLGQGTFTAPDTLQVEGAA LHFAKAALCTGARAAIPPVPGLEEAGCLTNETVFSLTSLPARLAVIGSGPVGCELAQAFARFGSKVTLVERGSGILGRED RDAAAILETAFRREGIELELGAKLVRAWSSGSEKRLLLERDGVGFEIAVDAILVGAGRAPNTEGLGLEAAGVEYDKSGVK VNDYLQTTNRRIYAAGDICSGYKFTHVADAQARIVIENSLFPGRRKNSSLTVPWCTYTDPEVAHVGMYQADALARGLKVE TLTIPFGDVDRAVLDGESEGFARVHLKKGSDVILGATIVARHAGEMIGEVALAINAGLGLSAIGRTIHPYPTQAESLRKL ADSYNRGRLTPRVKKLMGAWLRWQRE
Specific function: Resistance to Hg(2+) in bacteria appears to be governed by a specialized system which includes mercuric reductase. MerA protein is responsible for volatilizing mercury as Hg(0) [H]
COG id: COG1249
COG function: function code C; Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HMA domain [H]
Homologues:
Organism=Homo sapiens, GI91199540, Length=472, Percent_Identity=29.8728813559322, Blast_Score=178, Evalue=9e-45, Organism=Homo sapiens, GI50301238, Length=469, Percent_Identity=27.9317697228145, Blast_Score=131, Evalue=1e-30, Organism=Homo sapiens, GI291045266, Length=475, Percent_Identity=25.6842105263158, Blast_Score=100, Evalue=4e-21, Organism=Homo sapiens, GI22035672, Length=490, Percent_Identity=25.7142857142857, Blast_Score=100, Evalue=4e-21, Organism=Homo sapiens, GI33519430, Length=461, Percent_Identity=24.0780911062907, Blast_Score=87, Evalue=3e-17, Organism=Homo sapiens, GI33519428, Length=461, Percent_Identity=24.0780911062907, Blast_Score=87, Evalue=3e-17, Organism=Homo sapiens, GI33519426, Length=461, Percent_Identity=24.0780911062907, Blast_Score=87, Evalue=3e-17, Organism=Homo sapiens, GI148277065, Length=461, Percent_Identity=24.0780911062907, Blast_Score=87, Evalue=4e-17, Organism=Homo sapiens, GI148277071, Length=461, Percent_Identity=24.0780911062907, Blast_Score=86, Evalue=8e-17, Organism=Escherichia coli, GI87081717, Length=458, Percent_Identity=31.6593886462882, Blast_Score=210, Evalue=1e-55, Organism=Escherichia coli, GI1786307, Length=478, Percent_Identity=30.1255230125523, Blast_Score=185, Evalue=6e-48, Organism=Escherichia coli, GI1789915, Length=433, Percent_Identity=29.3302540415704, Blast_Score=127, Evalue=2e-30, Organism=Escherichia coli, GI87082354, Length=467, Percent_Identity=25.2676659528908, Blast_Score=118, Evalue=8e-28, Organism=Escherichia coli, GI1789065, Length=183, Percent_Identity=33.3333333333333, Blast_Score=74, Evalue=3e-14, Organism=Caenorhabditis elegans, GI32565766, Length=464, Percent_Identity=32.1120689655172, Blast_Score=201, Evalue=8e-52, Organism=Caenorhabditis elegans, GI17557007, Length=495, Percent_Identity=25.6565656565657, Blast_Score=149, Evalue=3e-36, Organism=Caenorhabditis elegans, GI71983429, Length=434, Percent_Identity=26.036866359447, Blast_Score=113, Evalue=2e-25, Organism=Caenorhabditis elegans, GI71983419, Length=434, Percent_Identity=26.036866359447, Blast_Score=113, Evalue=3e-25, Organism=Caenorhabditis elegans, GI71982272, Length=501, Percent_Identity=25.1497005988024, Blast_Score=93, Evalue=3e-19, Organism=Saccharomyces cerevisiae, GI6321091, Length=471, Percent_Identity=30.5732484076433, Blast_Score=180, Evalue=4e-46, Organism=Saccharomyces cerevisiae, GI6325166, Length=464, Percent_Identity=26.9396551724138, Blast_Score=134, Evalue=4e-32, Organism=Saccharomyces cerevisiae, GI6325240, Length=488, Percent_Identity=25.2049180327869, Blast_Score=100, Evalue=7e-22, Organism=Drosophila melanogaster, GI21358499, Length=462, Percent_Identity=33.1168831168831, Blast_Score=206, Evalue=3e-53, Organism=Drosophila melanogaster, GI17737741, Length=500, Percent_Identity=28.2, Blast_Score=121, Evalue=1e-27, Organism=Drosophila melanogaster, GI24640553, Length=487, Percent_Identity=25.8726899383984, Blast_Score=117, Evalue=2e-26, Organism=Drosophila melanogaster, GI24640549, Length=487, Percent_Identity=25.8726899383984, Blast_Score=117, Evalue=2e-26, Organism=Drosophila melanogaster, GI24640551, Length=484, Percent_Identity=25.8264462809917, Blast_Score=117, Evalue=2e-26,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016156 - InterPro: IPR013027 - InterPro: IPR017969 - InterPro: IPR006121 - InterPro: IPR000815 - InterPro: IPR021179 - InterPro: IPR004099 - InterPro: IPR012999 - InterPro: IPR001327 [H]
Pfam domain/function: PF00403 HMA; PF00070 Pyr_redox; PF07992 Pyr_redox_2; PF02852 Pyr_redox_dim [H]
EC number: =1.16.1.1 [H]
Molecular weight: Translated: 53748; Mature: 53617
Theoretical pI: Translated: 7.95; Mature: 7.95
Prosite motif: PS00076 PYRIDINE_REDOX_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDQFVFQPDTAENRELEANVCPKSWINPVPSGRYNLVVVGAGTAGLVCAAGAASLGARV CCCCEEECCCCCCCCEEECCCCCHHHCCCCCCCCEEEEEEECCCCCHHHHCCHHHHHHHH ALVERLALGGDCLNVGCVPSKALIRASRAVFDARHSGGFGVVGGDALLADFAAALQRMRR HHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHH LRAGISRHDSALRFRDELGVDVYLGQGTFTAPDTLQVEGAALHFAKAALCTGARAAIPPV HHHHHHHCCHHHHHHHHCCEEEEECCCCCCCCCCEEECCHHHHHHHHHHHCCCCCCCCCC PGLEEAGCLTNETVFSLTSLPARLAVIGSGPVGCELAQAFARFGSKVTLVERGSGILGRE CCCCCCCCCCCCHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCCEEEEEECCCCCCCCC DRDAAAILETAFRREGIELELGAKLVRAWSSGSEKRLLLERDGVGFEIAVDAILVGAGRA CCHHHHHHHHHHHHCCCEEEHHHHHHHHHCCCCCCEEEEEECCCCEEEEEEEEEEECCCC PNTEGLGLEAAGVEYDKSGVKVNDYLQTTNRRIYAAGDICSGYKFTHVADAQARIVIENS CCCCCCCEEECCCEECCCCCEEHHHHHHCCCEEEEECCCCCCCEEEEECCCCEEEEEECC LFPGRRKNSSLTVPWCTYTDPEVAHVGMYQADALARGLKVETLTIPFGDVDRAVLDGESE CCCCCCCCCEEEEEEEECCCCCHHEECCHHHHHHHCCCEEEEEEECCCCCCHHHCCCCCC GFARVHLKKGSDVILGATIVARHAGEMIGEVALAINAGLGLSAIGRTIHPYPTQAESLRK CEEEEEEECCCCEEEHHHHHHHHHHHHHHHHHHEEECCCCHHHHCCCCCCCCCCHHHHHH LADSYNRGRLTPRVKKLMGAWLRWQRE HHHHCCCCCCCHHHHHHHHHHHHCCCC >Mature Secondary Structure SDQFVFQPDTAENRELEANVCPKSWINPVPSGRYNLVVVGAGTAGLVCAAGAASLGARV CCCEEECCCCCCCCEEECCCCCHHHCCCCCCCCEEEEEEECCCCCHHHHCCHHHHHHHH ALVERLALGGDCLNVGCVPSKALIRASRAVFDARHSGGFGVVGGDALLADFAAALQRMRR HHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHH LRAGISRHDSALRFRDELGVDVYLGQGTFTAPDTLQVEGAALHFAKAALCTGARAAIPPV HHHHHHHCCHHHHHHHHCCEEEEECCCCCCCCCCEEECCHHHHHHHHHHHCCCCCCCCCC PGLEEAGCLTNETVFSLTSLPARLAVIGSGPVGCELAQAFARFGSKVTLVERGSGILGRE CCCCCCCCCCCCHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCCEEEEEECCCCCCCCC DRDAAAILETAFRREGIELELGAKLVRAWSSGSEKRLLLERDGVGFEIAVDAILVGAGRA CCHHHHHHHHHHHHCCCEEEHHHHHHHHHCCCCCCEEEEEECCCCEEEEEEEEEEECCCC PNTEGLGLEAAGVEYDKSGVKVNDYLQTTNRRIYAAGDICSGYKFTHVADAQARIVIENS CCCCCCCEEECCCEECCCCCEEHHHHHHCCCEEEEECCCCCCCEEEEECCCCEEEEEECC LFPGRRKNSSLTVPWCTYTDPEVAHVGMYQADALARGLKVETLTIPFGDVDRAVLDGESE CCCCCCCCCEEEEEEEECCCCCHHEECCHHHHHHHCCCEEEEEEECCCCCCHHHCCCCCC GFARVHLKKGSDVILGATIVARHAGEMIGEVALAINAGLGLSAIGRTIHPYPTQAESLRK CEEEEEEECCCCEEEHHHHHHHHHHHHHHHHHHEEECCCCHHHHCCCCCCCCCCHHHHHH LADSYNRGRLTPRVKKLMGAWLRWQRE HHHHCCCCCCCHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 3037534 [H]