| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197116820
Identifier: 197116820
GI number: 197116820
Start: 496820
End: 498124
Strand: Reverse
Name: 197116820
Synonym: Gbem_0422
Alternate gene names: NA
Gene position: 498124-496820 (Counterclockwise)
Preceding gene: 197116823
Following gene: 197116819
Centisome position: 10.79
GC content: 41.3
Gene sequence:
>1305_bases ATGAGCAATCAAAGAATCAAAATTCCACGTGCCTCTGACCGATCAATAGTCGATGCATTCAAGGAACTTGGTGAGACATA CGGAGTGTCCTCAGCTCACATCTCCGCATTAGGCTTTAGCAACCTCGGCGAAGTCAACATCGGTGGTAACGCGAGTGGAG ATTTGGCGGCACTCCTTGAGTTGAAATCAGCTGTAATTGATGGAATGTCTTTGCAGATAAGAGGCCTTGGAATTTCTTAT TCTCGTGGCGGACAGTATCAACCTGAGCAAAAATCCCCAATTTTTGATGAAATTGTTTTGAGCTATAACCAGCAGGGCAA TCTAAGTAACACCGAAAAGATGCAAATTGTTGCTTTTATCAACAAGAAACTTAAAGCGTTTGATCCAGGGCGACTTGCTG GTCGGGGAGTTTCCGAAGAACAAAACCAGATGATTGCAATTCATGAAAGCACCCTTGAACGACTTGAATTGTTAAACGAG GATCTTGTTAGGCAAAGCTCCGCATTTAGGGAGAATCTTGAAGTTCAGTACGCAGATAAAGTTACAAAACTGGAAGAGGC AAACTTACAGCAAAAAGCCATATTAGAAGAGGACTACAAGGAAAAGTCGGTCAGCTTAAAAGAAAAAGAAAAGCTGCTTG AAGAAAAAATTAAAACAATTGATGACAGAGACAATACCCATGTCCGTAGAGAAATCCGGGACAGAATGTTGGAAGATGTA AAAACCAGAATTAGTAACTTTGGAGTATCTTCCAACACCGAAAGAAAAAGAAAACCAGTATTTTTCGGGATGCTGACATT GGTGGTAATCCTGCTTACATTATTACTGTATTCCGGATTAGAAGCAAAAATGGCTATAACAGGCACAGACAAACTTCCAA TGTACTGGTTATGGGGGCGGTTTACGCTGTATTCATTAGGCTTGGTAGGAACAATACTTTATTACATCAAATGGGAGAAT AAATGGGCTGAACAACATTCTTCCTCCGAGTTCCAACTCCAACAATTTTATATAGATGTAAATAGAGCAAATTGGATTAT CGAAAGCTGCCTTGAGTGGCGCAAAGAGACGCAGTCAACCCTCCCCAAAACACTCATTGAAGGAATTTCAAGGAACCTCT TTGTCAAAGAACAAGATGAAACCGAAAAAGTTATTCACCCTGCAGATCAACTTGCCTCGGCGCTTATGGGAAGGGCATCT AAGCTTAAGTTGAGGCTTGGTGAAAATGAATTGGAATTTGACAAACCGGGAAAAATTCCGAATAAGCCGCTACGTGTCAG GCCAGTATCAGAGACTGACACATAA
Upstream 100 bases:
>100_bases CTGATAGATATTTTAATGTTGCATGCCGACAAGGGGGGATGACGGCAATTTCCTCCTAATTACATAGTTATGTGAATCAA TAAAATAAGGAGATGCAAAA
Downstream 100 bases:
>100_bases CAAGCGCTCGGACCGTGATCGGGCATAAAGCCGCCCGTCAGGTCAAGCGCGGCCCCGTTGAACAAGTAAATATATTCGGA GGATGCGAATGCCAGACAAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 434; Mature: 433
Protein sequence:
>434_residues MSNQRIKIPRASDRSIVDAFKELGETYGVSSAHISALGFSNLGEVNIGGNASGDLAALLELKSAVIDGMSLQIRGLGISY SRGGQYQPEQKSPIFDEIVLSYNQQGNLSNTEKMQIVAFINKKLKAFDPGRLAGRGVSEEQNQMIAIHESTLERLELLNE DLVRQSSAFRENLEVQYADKVTKLEEANLQQKAILEEDYKEKSVSLKEKEKLLEEKIKTIDDRDNTHVRREIRDRMLEDV KTRISNFGVSSNTERKRKPVFFGMLTLVVILLTLLLYSGLEAKMAITGTDKLPMYWLWGRFTLYSLGLVGTILYYIKWEN KWAEQHSSSEFQLQQFYIDVNRANWIIESCLEWRKETQSTLPKTLIEGISRNLFVKEQDETEKVIHPADQLASALMGRAS KLKLRLGENELEFDKPGKIPNKPLRVRPVSETDT
Sequences:
>Translated_434_residues MSNQRIKIPRASDRSIVDAFKELGETYGVSSAHISALGFSNLGEVNIGGNASGDLAALLELKSAVIDGMSLQIRGLGISY SRGGQYQPEQKSPIFDEIVLSYNQQGNLSNTEKMQIVAFINKKLKAFDPGRLAGRGVSEEQNQMIAIHESTLERLELLNE DLVRQSSAFRENLEVQYADKVTKLEEANLQQKAILEEDYKEKSVSLKEKEKLLEEKIKTIDDRDNTHVRREIRDRMLEDV KTRISNFGVSSNTERKRKPVFFGMLTLVVILLTLLLYSGLEAKMAITGTDKLPMYWLWGRFTLYSLGLVGTILYYIKWEN KWAEQHSSSEFQLQQFYIDVNRANWIIESCLEWRKETQSTLPKTLIEGISRNLFVKEQDETEKVIHPADQLASALMGRAS KLKLRLGENELEFDKPGKIPNKPLRVRPVSETDT >Mature_433_residues SNQRIKIPRASDRSIVDAFKELGETYGVSSAHISALGFSNLGEVNIGGNASGDLAALLELKSAVIDGMSLQIRGLGISYS RGGQYQPEQKSPIFDEIVLSYNQQGNLSNTEKMQIVAFINKKLKAFDPGRLAGRGVSEEQNQMIAIHESTLERLELLNED LVRQSSAFRENLEVQYADKVTKLEEANLQQKAILEEDYKEKSVSLKEKEKLLEEKIKTIDDRDNTHVRREIRDRMLEDVK TRISNFGVSSNTERKRKPVFFGMLTLVVILLTLLLYSGLEAKMAITGTDKLPMYWLWGRFTLYSLGLVGTILYYIKWENK WAEQHSSSEFQLQQFYIDVNRANWIIESCLEWRKETQSTLPKTLIEGISRNLFVKEQDETEKVIHPADQLASALMGRASK LKLRLGENELEFDKPGKIPNKPLRVRPVSETDT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 49395; Mature: 49264
Theoretical pI: Translated: 6.71; Mature: 6.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNQRIKIPRASDRSIVDAFKELGETYGVSSAHISALGFSNLGEVNIGGNASGDLAALLE CCCCEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCEECCCCCCCHHHHHHH LKSAVIDGMSLQIRGLGISYSRGGQYQPEQKSPIFDEIVLSYNQQGNLSNTEKMQIVAFI HHHHHHCCCEEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHH NKKLKAFDPGRLAGRGVSEEQNQMIAIHESTLERLELLNEDLVRQSSAFRENLEVQYADK HHHHHCCCCCHHCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHH VTKLEEANLQQKAILEEDYKEKSVSLKEKEKLLEEKIKTIDDRDNTHVRREIRDRMLEDV HHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH KTRISNFGVSSNTERKRKPVFFGMLTLVVILLTLLLYSGLEAKMAITGTDKLPMYWLWGR HHHHHHCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEEHHHHH FTLYSLGLVGTILYYIKWENKWAEQHSSSEFQLQQFYIDVNRANWIIESCLEWRKETQST HHHHHHHHHHHHHHHEEECCHHHHHCCCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHH LPKTLIEGISRNLFVKEQDETEKVIHPADQLASALMGRASKLKLRLGENELEFDKPGKIP HHHHHHHHHCCCCEEECCCCHHHHCCCHHHHHHHHHCCCHHEEEEECCCCCCCCCCCCCC NKPLRVRPVSETDT CCCEEEECCCCCCC >Mature Secondary Structure SNQRIKIPRASDRSIVDAFKELGETYGVSSAHISALGFSNLGEVNIGGNASGDLAALLE CCCEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCEECCCCCCCHHHHHHH LKSAVIDGMSLQIRGLGISYSRGGQYQPEQKSPIFDEIVLSYNQQGNLSNTEKMQIVAFI HHHHHHCCCEEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHH NKKLKAFDPGRLAGRGVSEEQNQMIAIHESTLERLELLNEDLVRQSSAFRENLEVQYADK HHHHHCCCCCHHCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHH VTKLEEANLQQKAILEEDYKEKSVSLKEKEKLLEEKIKTIDDRDNTHVRREIRDRMLEDV HHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH KTRISNFGVSSNTERKRKPVFFGMLTLVVILLTLLLYSGLEAKMAITGTDKLPMYWLWGR HHHHHHCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEEHHHHH FTLYSLGLVGTILYYIKWENKWAEQHSSSEFQLQQFYIDVNRANWIIESCLEWRKETQST HHHHHHHHHHHHHHHEEECCHHHHHCCCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHH LPKTLIEGISRNLFVKEQDETEKVIHPADQLASALMGRASKLKLRLGENELEFDKPGKIP HHHHHHHHHCCCCEEECCCCHHHHCCCHHHHHHHHHCCCHHEEEEECCCCCCCCCCCCCC NKPLRVRPVSETDT CCCEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA