Click here to switch to the map view.

The map label for this gene is ydaL [C]

Identifier: 197116769

GI number: 197116769

Start: 448068

End: 448778

Strand: Direct

Name: ydaL [C]

Synonym: Gbem_0369

Alternate gene names: 197116769

Gene position: 448068-448778 (Clockwise)

Preceding gene: 197116766

Following gene: 308535160

Centisome position: 9.71

GC content: 64.28

Gene sequence:

>711_bases
ATGAAGAAGAAAGAGAAGCCGAAACAAAAGCAGAAGGAGTTCAGCGCCTCCCCCTTTAAGGCGCTGAAGGGCGCCGCACT
GGATTTGAGTGCGGAAGCCCAGCCCCAAGCGCCGGCGCCCCAAAAACCGCAAAAAAGCGCCCCGAACCTGAGCGACGAGC
TCCTTTTCCTCGACGCCGTAGCCGATGTGCGCCCCCTGCGTGCCACCGCGGTCACCCCGGCCAAGGCCAACGCCAACGCC
AAGGCACATGGCGCCGCAAGGAGGGAGCGCGAAGAGGAAGAGCAGCGCGCCTTCTTGCAGGCCCTGGACCAATTGAAGCT
CGATGTCCGTTTCCAGGACGAGTTCGCGGAGCCGGAATCCCCCGACCGTCCGGCCCCGGTGAACCGGCTGCGGCAGATAA
GGCGCGGCGGGATCAGGATCGACCTGCAGCTCGACCTGCACGGCCTGACCCGGGAGGAGGCCCTGGAGAACCTGGACCGC
TTCGTCAAGGGGGCCTATAACCGCGGGCAGAAAGGTGTGCTGGTGATCACCGGCAAGGGGAACAATTCCGCCGGCGAACC
TGTTCTCAAGTCCGCAGTCGCCGGCTGGCTCAGGGAGAAGGGAAAGGGGATGGTCTCCGAATTCATCCAGGCCCCCAACG
ACATGGGGGGGAGCGGCGCGGTAGTGGTCTTCCTCAAGGAAAAGAAGGCGCCGGAACCGGAGCAAGGGTAG

Upstream 100 bases:

>100_bases
TTGGAGCGCTTGGATCGCTATGTTCATTAGATTCAGGGTGCACTCCGTTCCAGAAGGGGACAGGACAACAGCCGGGGTGA
ATAGATAGAGAGGCCGTAGC

Downstream 100 bases:

>100_bases
CGCCCTCTTTCCCGCAGCAACAGGAGCAGCGATGCCGGCATCGGAACCGTACCGCATAGGAGTGGATCTGGGCGGGACCA
AGACGGAGGTCGTGGTGCTC

Product: Smr domain-containing protein

Products: NA

Alternate protein names: Smr Protein/MutS2-Like; Smr Domain Protein

Number of amino acids: Translated: 236; Mature: 236

Protein sequence:

>236_residues
MKKKEKPKQKQKEFSASPFKALKGAALDLSAEAQPQAPAPQKPQKSAPNLSDELLFLDAVADVRPLRATAVTPAKANANA
KAHGAARREREEEEQRAFLQALDQLKLDVRFQDEFAEPESPDRPAPVNRLRQIRRGGIRIDLQLDLHGLTREEALENLDR
FVKGAYNRGQKGVLVITGKGNNSAGEPVLKSAVAGWLREKGKGMVSEFIQAPNDMGGSGAVVVFLKEKKAPEPEQG

Sequences:

>Translated_236_residues
MKKKEKPKQKQKEFSASPFKALKGAALDLSAEAQPQAPAPQKPQKSAPNLSDELLFLDAVADVRPLRATAVTPAKANANA
KAHGAARREREEEEQRAFLQALDQLKLDVRFQDEFAEPESPDRPAPVNRLRQIRRGGIRIDLQLDLHGLTREEALENLDR
FVKGAYNRGQKGVLVITGKGNNSAGEPVLKSAVAGWLREKGKGMVSEFIQAPNDMGGSGAVVVFLKEKKAPEPEQG
>Mature_236_residues
MKKKEKPKQKQKEFSASPFKALKGAALDLSAEAQPQAPAPQKPQKSAPNLSDELLFLDAVADVRPLRATAVTPAKANANA
KAHGAARREREEEEQRAFLQALDQLKLDVRFQDEFAEPESPDRPAPVNRLRQIRRGGIRIDLQLDLHGLTREEALENLDR
FVKGAYNRGQKGVLVITGKGNNSAGEPVLKSAVAGWLREKGKGMVSEFIQAPNDMGGSGAVVVFLKEKKAPEPEQG

Specific function: Unknown

COG id: COG2840

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25789; Mature: 25789

Theoretical pI: Translated: 10.28; Mature: 10.28

Prosite motif: PS50828 SMR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKKEKPKQKQKEFSASPFKALKGAALDLSAEAQPQAPAPQKPQKSAPNLSDELLFLDAV
CCCCCCHHHHHHHCCCCHHHHHCCCCEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
ADVRPLRATAVTPAKANANAKAHGAARREREEEEQRAFLQALDQLKLDVRFQDEFAEPES
HCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCC
PDRPAPVNRLRQIRRGGIRIDLQLDLHGLTREEALENLDRFVKGAYNRGQKGVLVITGKG
CCCCCHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECC
NNSAGEPVLKSAVAGWLREKGKGMVSEFIQAPNDMGGSGAVVVFLKEKKAPEPEQG
CCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCC
>Mature Secondary Structure
MKKKEKPKQKQKEFSASPFKALKGAALDLSAEAQPQAPAPQKPQKSAPNLSDELLFLDAV
CCCCCCHHHHHHHCCCCHHHHHCCCCEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
ADVRPLRATAVTPAKANANAKAHGAARREREEEEQRAFLQALDQLKLDVRFQDEFAEPES
HCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCC
PDRPAPVNRLRQIRRGGIRIDLQLDLHGLTREEALENLDRFVKGAYNRGQKGVLVITGKG
CCCCCHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECC
NNSAGEPVLKSAVAGWLREKGKGMVSEFIQAPNDMGGSGAVVVFLKEKKAPEPEQG
CCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA