Click here to switch to the map view.

The map label for this gene is recA [H]

Identifier: 197104451

GI number: 197104451

Start: 1092056

End: 1093141

Strand: Direct

Name: recA [H]

Synonym: PHZ_c0985

Alternate gene names: 197104451

Gene position: 1092056-1093141 (Clockwise)

Preceding gene: 197104443

Following gene: 197104452

Centisome position: 27.33

GC content: 67.4

Gene sequence:

>1086_bases
ATGACTCAGTCGGCGTTGAGGCTCGTGGGCAAGGAAGACGGAGAAAAGCAGCGCGCGCTCGAGGCGGCGCTGGCGCAGAT
CGATCGGGCCTTCGGCAAGGGCTCGGTGATGAAGCTGGGCGACAAGGGCAAGATCGTCGAGATCGAGTCCGTGTCGACGG
GCTCGCTCGGCCTCGACATGGCGCTGGGCATCGGCGGCCTGCCCAAGGGCCGCATCGTCGAAATCTATGGGCCGGAAAGC
TCGGGCAAGACGACGCTCGCCCTGCACGTGGTGGCCGAGGTGCAGAAGGCCGGCGGCACCGCCGCCTTCGTGGACGCCGA
GCACGCGCTCGACCCGTCCTACGCCCACAAGCTGGGCGTGAACCTGGACGACCTGCTGGTCGCCCAGCCCGACACCGGCG
AGCAGGCGCTGGAGATCACCGACACCCTGGTGCGCTCGAACGCCGTGGACGTGATCGTGGTCGACTCGGTGGCGGCGCTG
ACGCCGCGGGCCGAGATCGAGGGCGAGATGGGCGACAGCCTTCCGGGCCTGCAGGCGCGCCTGATGAGCCAGGCGCTGCG
CAAGCTCACCGCCTCCATCTCCAAGGCCAAGACGCTGGTCATCTTCATCAACCAGATCCGTATGAAGATCGGGGTGATGT
ACGGCTCGCCCGAGACCACCACGGGCGGCAACGCGCTGAAGTTCTACGCCTCGGTGCGCCTCGACATCCGCCGCACCGGC
TCGGTCAAGCAACGCGACGAGATCGTCGGCAACAACGTCCGGGTGAAGGTGGTCAAGAACAAGGTCGCCCCGCCGTTCCG
CGAGGTCGAGTTCGACATCATGTACGGCGAGGGGATCTCCAAGCTGGGCGAGATCATCGACCTCGGCGTCAAGGCCGGCG
TCGTCGAGAAGGCGGGCTCCTGGTTCTCGTTCAACTCCCAGCGCATCGGCCAGGGCCGCGACAATGTGCGCGAGTTCCTG
AAGCAGAACCCCGACATCGCCGAGCAGATCGAGGCCAAGGTCCGCGGCGCCAAGTCGGCGATCGAGGAAGAGCTGCTGGT
CGGCCCGTCCGAGGGCGAGGGCGACGAGGCCGACGGCTCGCTCTGA

Upstream 100 bases:

>100_bases
ATCTTGCGAACCTGGAACAAAGGAGGTACGCATGAGTCCTCGGCGACGGCGTGAGTTCGACGGCCGGGTTGGCGGAATCG
TGGGATAGAGGGCGCTGGAT

Downstream 100 bases:

>100_bases
GCCAGGGCCGGAAAGACTCCTCTGGACCTGCGCCGCGCCGGCGGCGGGCCTCCCCGCCAACCCGGTCCGCCGCCTCCACC
CTGCGCGCAGGCGCAAGCCA

Product: recombinase A

Products: NA

Alternate protein names: Recombinase A [H]

Number of amino acids: Translated: 361; Mature: 360

Protein sequence:

>361_residues
MTQSALRLVGKEDGEKQRALEAALAQIDRAFGKGSVMKLGDKGKIVEIESVSTGSLGLDMALGIGGLPKGRIVEIYGPES
SGKTTLALHVVAEVQKAGGTAAFVDAEHALDPSYAHKLGVNLDDLLVAQPDTGEQALEITDTLVRSNAVDVIVVDSVAAL
TPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKAKTLVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRTG
SVKQRDEIVGNNVRVKVVKNKVAPPFREVEFDIMYGEGISKLGEIIDLGVKAGVVEKAGSWFSFNSQRIGQGRDNVREFL
KQNPDIAEQIEAKVRGAKSAIEEELLVGPSEGEGDEADGSL

Sequences:

>Translated_361_residues
MTQSALRLVGKEDGEKQRALEAALAQIDRAFGKGSVMKLGDKGKIVEIESVSTGSLGLDMALGIGGLPKGRIVEIYGPES
SGKTTLALHVVAEVQKAGGTAAFVDAEHALDPSYAHKLGVNLDDLLVAQPDTGEQALEITDTLVRSNAVDVIVVDSVAAL
TPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKAKTLVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRTG
SVKQRDEIVGNNVRVKVVKNKVAPPFREVEFDIMYGEGISKLGEIIDLGVKAGVVEKAGSWFSFNSQRIGQGRDNVREFL
KQNPDIAEQIEAKVRGAKSAIEEELLVGPSEGEGDEADGSL
>Mature_360_residues
TQSALRLVGKEDGEKQRALEAALAQIDRAFGKGSVMKLGDKGKIVEIESVSTGSLGLDMALGIGGLPKGRIVEIYGPESS
GKTTLALHVVAEVQKAGGTAAFVDAEHALDPSYAHKLGVNLDDLLVAQPDTGEQALEITDTLVRSNAVDVIVVDSVAALT
PRAEIEGEMGDSLPGLQARLMSQALRKLTASISKAKTLVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRTGS
VKQRDEIVGNNVRVKVVKNKVAPPFREVEFDIMYGEGISKLGEIIDLGVKAGVVEKAGSWFSFNSQRIGQGRDNVREFLK
QNPDIAEQIEAKVRGAKSAIEEELLVGPSEGEGDEADGSL

Specific function: Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with lexA causing its activation

COG id: COG0468

COG function: function code L; RecA/RadA recombinase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recA family [H]

Homologues:

Organism=Escherichia coli, GI1789051, Length=323, Percent_Identity=66.5634674922601, Blast_Score=452, Evalue=1e-128,

Paralogues:

None

Copy number: 1548 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 800-1200 (L-broth) 40,000-60,000 (L-broth + Nalidixate) 4,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR013765
- InterPro:   IPR020584
- InterPro:   IPR020588
- InterPro:   IPR020587 [H]

Pfam domain/function: PF00154 RecA [H]

EC number: NA

Molecular weight: Translated: 38468; Mature: 38337

Theoretical pI: Translated: 5.09; Mature: 5.09

Prosite motif: PS00321 RECA_1 ; PS50162 RECA_2 ; PS50163 RECA_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQSALRLVGKEDGEKQRALEAALAQIDRAFGKGSVMKLGDKGKIVEIESVSTGSLGLDM
CCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEEECCCCCCCCHHH
ALGIGGLPKGRIVEIYGPESSGKTTLALHVVAEVQKAGGTAAFVDAEHALDPSYAHKLGV
HHCCCCCCCCCEEEEECCCCCCCEEEEEHHHHHHHHCCCCEEEEEHHHCCCHHHHHHHCC
NLDDLLVAQPDTGEQALEITDTLVRSNAVDVIVVDSVAALTPRAEIEGEMGDSLPGLQAR
CHHHEEEECCCCCCHHHHHHHHHHHCCCCCEEEECCHHHHCCCHHCCCCCCCCCCHHHHH
LMSQALRKLTASISKAKTLVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRTG
HHHHHHHHHHHHHHHHEEEEEEHHHHEEEEEEEECCCCCCCCCCEEEEEEEEEEEEECCC
SVKQRDEIVGNNVRVKVVKNKVAPPFREVEFDIMYGEGISKLGEIIDLGVKAGVVEKAGS
CCHHHHHHCCCCEEEEEEECCCCCCHHHEEEEEEECCCHHHHHHHHHHHHHCCHHHHCCC
WFSFNSQRIGQGRDNVREFLKQNPDIAEQIEAKVRGAKSAIEEELLVGPSEGEGDEADGS
CEECCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCC
L
C
>Mature Secondary Structure 
TQSALRLVGKEDGEKQRALEAALAQIDRAFGKGSVMKLGDKGKIVEIESVSTGSLGLDM
CHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEEECCCCCCCCHHH
ALGIGGLPKGRIVEIYGPESSGKTTLALHVVAEVQKAGGTAAFVDAEHALDPSYAHKLGV
HHCCCCCCCCCEEEEECCCCCCCEEEEEHHHHHHHHCCCCEEEEEHHHCCCHHHHHHHCC
NLDDLLVAQPDTGEQALEITDTLVRSNAVDVIVVDSVAALTPRAEIEGEMGDSLPGLQAR
CHHHEEEECCCCCCHHHHHHHHHHHCCCCCEEEECCHHHHCCCHHCCCCCCCCCCHHHHH
LMSQALRKLTASISKAKTLVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRTG
HHHHHHHHHHHHHHHHEEEEEEHHHHEEEEEEEECCCCCCCCCCEEEEEEEEEEEEECCC
SVKQRDEIVGNNVRVKVVKNKVAPPFREVEFDIMYGEGISKLGEIIDLGVKAGVVEKAGS
CCHHHHHHCCCCEEEEEEECCCCCCHHHEEEEEEECCCHHHHHHHHHHHHHCCHHHHCCC
WFSFNSQRIGQGRDNVREFLKQNPDIAEQIEAKVRGAKSAIEEELLVGPSEGEGDEADGS
CEECCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCC
L
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA