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The map label for this gene is yqhC [H]

Identifier: 197104429

GI number: 197104429

Start: 1059605

End: 1060504

Strand: Direct

Name: yqhC [H]

Synonym: PHZ_c0963

Alternate gene names: 197104429

Gene position: 1059605-1060504 (Clockwise)

Preceding gene: 197104427

Following gene: 197104431

Centisome position: 26.51

GC content: 73.78

Gene sequence:

>900_bases
GTGTGGAACGCCTTCGGCATGGAAGAGCTCGCGGAACTGATCGCCCGGCACGCCCAGCCCGACGGGATGGTCGACATGCC
CGTTCCTGGCCTGGCGCTGTTCCACGCCTCGGGCCCGACCGCGGCCGTGCCGGTGCTGCACAAGCCGGCCGTCTGCATCA
TCGCGCAAGGCGCCAAGGTGGCGACGGTGGGCGAGGAGACCTTCCGCTACGACGCCACGTCCCATCTGGTGATCTCGGTG
GAGCTGCCCCTCACCGGCCAGGTCACCGAGGCCAGCCCCGAGCGGCCGTACCTATGCGTGCGGATCGACCTCGAGCCCGT
CCTGCTGGGCGAGCTGCTGCTGGAGCCGCTGCCGGCGGCGGGGGCCGAAAGCGGCCGCGGCCTGCACGTCAGCCGCACCA
CGCCCGAGCTCGCCGGCGCCGCGGCCCGCCTCGTGGCCCTGCTGGACGCGCCGCAGGACGCCCCCGCGCTCGCCCCGCTG
ATCCGGCGCGAGATCCACTACCGCCTGCTCACCGGCGACCAGGCCGGCCTCGTGCGCCAGATCGGCATGCCCGACAGCCG
GATCGCCCATGTGAACCGCGCCATCGCCTGGATCCGCGCCAACTTCGACCGGCCGTTCAGCATCGAGGCGGTGGCCCGGG
CCGCCGGCATGAGCCCCTCGGCGCTGCACCAGCACTTCAAGGCGATCACCGCCATGAGCCCGCTGCAGTACCAGAAGCAG
CTCCGGCTGCAGGAGGCCCGCCGCCTGATGATCGGCGAGGGACGCGACGCCCAGCACGCGGCCTTCGAGGTCGGCTACGA
GAGCCCCTCGCAGTTCTCGCGCGAGTACGCCCGCCTGTTCGGAGCCCCGCCGGCCCGCGACGCGGCGCGGCTGCGGGCCG
CGGCGCCGGCGTTCGCGTAA

Upstream 100 bases:

>100_bases
GAGAGATGCGCCGGACCGGCCGAACGGCGTTAGACCGCTCCTCCGCCGTTCTTGCCCGATCCTCCAGGAAAAGCCTGTCG
CGGTTGCGCCGCCCGCGCGC

Downstream 100 bases:

>100_bases
GGCCCGCTACTCGCCGATCCCCAGCACCTTCTTCAGGAACAGCACCTCGGTTGCGCGGACGGCTTCCTGGTTGGCCTTCT
TCTGGATGCCGTGGCCTTCG

Product: transcriptional regulator, AraC type

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MWNAFGMEELAELIARHAQPDGMVDMPVPGLALFHASGPTAAVPVLHKPAVCIIAQGAKVATVGEETFRYDATSHLVISV
ELPLTGQVTEASPERPYLCVRIDLEPVLLGELLLEPLPAAGAESGRGLHVSRTTPELAGAAARLVALLDAPQDAPALAPL
IRREIHYRLLTGDQAGLVRQIGMPDSRIAHVNRAIAWIRANFDRPFSIEAVARAAGMSPSALHQHFKAITAMSPLQYQKQ
LRLQEARRLMIGEGRDAQHAAFEVGYESPSQFSREYARLFGAPPARDAARLRAAAPAFA

Sequences:

>Translated_299_residues
MWNAFGMEELAELIARHAQPDGMVDMPVPGLALFHASGPTAAVPVLHKPAVCIIAQGAKVATVGEETFRYDATSHLVISV
ELPLTGQVTEASPERPYLCVRIDLEPVLLGELLLEPLPAAGAESGRGLHVSRTTPELAGAAARLVALLDAPQDAPALAPL
IRREIHYRLLTGDQAGLVRQIGMPDSRIAHVNRAIAWIRANFDRPFSIEAVARAAGMSPSALHQHFKAITAMSPLQYQKQ
LRLQEARRLMIGEGRDAQHAAFEVGYESPSQFSREYARLFGAPPARDAARLRAAAPAFA
>Mature_299_residues
MWNAFGMEELAELIARHAQPDGMVDMPVPGLALFHASGPTAAVPVLHKPAVCIIAQGAKVATVGEETFRYDATSHLVISV
ELPLTGQVTEASPERPYLCVRIDLEPVLLGELLLEPLPAAGAESGRGLHVSRTTPELAGAAARLVALLDAPQDAPALAPL
IRREIHYRLLTGDQAGLVRQIGMPDSRIAHVNRAIAWIRANFDRPFSIEAVARAAGMSPSALHQHFKAITAMSPLQYQKQ
LRLQEARRLMIGEGRDAQHAAFEVGYESPSQFSREYARLFGAPPARDAARLRAAAPAFA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082197, Length=290, Percent_Identity=35.1724137931034, Blast_Score=179, Evalue=2e-46,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060
- InterPro:   IPR009594 [H]

Pfam domain/function: PF06719 AraC_N; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 32244; Mature: 32244

Theoretical pI: Translated: 7.08; Mature: 7.08

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWNAFGMEELAELIARHAQPDGMVDMPVPGLALFHASGPTAAVPVLHKPAVCIIAQGAKV
CCCCCCHHHHHHHHHHHCCCCCEEECCCCCEEEEECCCCCEECCCCCCCEEEEEECCCEE
ATVGEETFRYDATSHLVISVELPLTGQVTEASPERPYLCVRIDLEPVLLGELLLEPLPAA
EEECHHHHEECCCCEEEEEEECCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHCCCCCC
GAESGRGLHVSRTTPELAGAAARLVALLDAPQDAPALAPLIRREIHYRLLTGDQAGLVRQ
CCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHEEEEECCCCCHHHH
IGMPDSRIAHVNRAIAWIRANFDRPFSIEAVARAAGMSPSALHQHFKAITAMSPLQYQKQ
CCCCCHHHHHHHHHHEEEEECCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHH
LRLQEARRLMIGEGRDAQHAAFEVGYESPSQFSREYARLFGAPPARDAARLRAAAPAFA
HHHHHHHHHHHCCCCCCCHHEEEECCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCC
>Mature Secondary Structure
MWNAFGMEELAELIARHAQPDGMVDMPVPGLALFHASGPTAAVPVLHKPAVCIIAQGAKV
CCCCCCHHHHHHHHHHHCCCCCEEECCCCCEEEEECCCCCEECCCCCCCEEEEEECCCEE
ATVGEETFRYDATSHLVISVELPLTGQVTEASPERPYLCVRIDLEPVLLGELLLEPLPAA
EEECHHHHEECCCCEEEEEEECCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHCCCCCC
GAESGRGLHVSRTTPELAGAAARLVALLDAPQDAPALAPLIRREIHYRLLTGDQAGLVRQ
CCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHEEEEECCCCCHHHH
IGMPDSRIAHVNRAIAWIRANFDRPFSIEAVARAAGMSPSALHQHFKAITAMSPLQYQKQ
CCCCCHHHHHHHHHHEEEEECCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHH
LRLQEARRLMIGEGRDAQHAAFEVGYESPSQFSREYARLFGAPPARDAARLRAAAPAFA
HHHHHHHHHHHCCCCCCCHHEEEECCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]