| Definition | Phenylobacterium zucineum HLK1, complete genome. |
|---|---|
| Accession | NC_011144 |
| Length | 3,996,255 |
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The map label for this gene is zraS [C]
Identifier: 197104163
GI number: 197104163
Start: 762328
End: 764223
Strand: Direct
Name: zraS [C]
Synonym: PHZ_c0697
Alternate gene names: 197104163
Gene position: 762328-764223 (Clockwise)
Preceding gene: 197104162
Following gene: 197104165
Centisome position: 19.08
GC content: 73.36
Gene sequence:
>1896_bases ATGACCGCCCAGCGCGCCCGGCTGATGATGGTGGACGACGAGGCCGACATCCTCGTCGCCCTGCAGGATCTGTTCGAGAC GACCTACGACGTCAGCGCCTTCACCTCGCCCGCCGAGGCGCTGGAAGCCCTGGCCGGCGGCCTCGACCCCGCGGTGATCG TCTCGGACCAGCGGATGCCGGGCATGCCGGGCGACCGGTTCCTGGCCGAGGCCCGCAGGCTGTGCGACGCCGGGGCCATC CTGCTCACCGGCTACGCCGACCTGAGCGCGGTCACCGCCGCCCTGAACGGCGGCGGGATCGTCGGCTACGTGCCCAAGCC CTGGGAGCCCGACGCCCTGAAGGCCATGGTGGCCGGGGCGGTCGAACAGCACCACCTGCGCCGCGCTCTAGGGCAGGAGC AGGCGCTGCTGCACGGCCTGATGGACCATCTGCCCTACGCCGTGGCGTTCAAGGACGCGCAGGGCCGCTTCGTCCATCTC AACGAGCGCAAGGCGGGCGAGTTCGGCCGCGCCGCCGCGGCCTGCGTCGGCCTGACGGAGGCCGAGCTCGGCGGCGTCGT CCGCGCCGAGGAGCGGCAGGCGATCGCCGAGCGCCGGGCTCTGCAGGTTGTCGAGGAACGGCCCGGACCGGCGGGCCCGT CCTGGATCCAGGTCGAGTACGTGCCGCTCCTGGGGCGTGCGGGCGAGGTCGAGACGCTCGTGGTGATGGAGCGCGACATC ACCGAGCAGCGCCTGGCCGAGCAGCAGCTGCGCCAGTCGGACAAGCTGCGCGCGCTGGGCACGCTGGCCGGCGGCGTGGC CCACGACTTCAACAACCTGCTGACCGCCATCGTCGGCAGCCTGGAGCTGGCGAGCAAGCGGCTGGACCGCGATCCGGAGA CCGTGCGCCGCTACCTCGACAACGCCGCCCTGGCGGCGCAGCGCGGCGCATCCCTGACCCAACGGCTGCTGGGCTTCAGC CGCCGGACCGACAGCCGCCTGGCGGTGGTGGATGTCGCCGCCGCCATGACCGGCATGCGCGACCTGCTGTCCCGCACGCT GGGCGGGGGCGTCGAGGTGGAATGGCGGATCGCCGCCGACCTGTGGCCGACGTCGGTGGAGCCGGACCAGCTCGAGGTCG CGATCCTGAACCTGGCGATCAACGCGCGCGACGCCATGCCGGACGGCGGCGTCATCACCATCGCGGCGCGCAACGTCAGC CTGCCTGCGGAGGCCGACCTGGAGCGGGGCCTTACGGCCGGCGACTACGTCATGCTGGTCATCGCCGACACGGGCGAGGG GATGCCGCCCGAGCTGCTGGAACGGGTGCTGGAGCCCTTCTTCACGACCAAGCCGGTGGGCAAGGGCACGGGCCTGGGCC TGCCGATGGTCTACGGCTTCGCGCAGCGTTCGGGCGGGACCCTGTCGATCCGCAGCACGCCGGGGCAGGGCACGGAGGTC GTCATGTACCTGCCGCGCGCCGGGGAGGCGGACGAGCCGCTTCCGGAGTCGGCGCCGGCCGCTGTCCGGCGGGGACCGCG CGCGCGCATCCTGGTGCTGGACGACGAGCCGGGCGTGCGGTCGGTGACCGCCGCCAGCCTGCGGGACCTGGGCCATGAGG TGGTGGAAGCCGCCGACGGGCCGGCGGCGCTGGCGATCCTGCAGGGCGGCCGGGAGGTCGACCTCGCGGTGGTGGATTTC GCCATGCCCGGCATGAACGGGCTGGAGTTCGTCGAGAAGGCCCGACGGCTGGCGGCCGGCCTGCCGGTGATCCTGCTCAC CGGCTACGTCGACGTCGAGGCGGCCCCCGACGACGTCATGGTGCTGCACAAGCCGTTCACCGCCGCCACGCTCGAAGCCG CCGTTGCGGCCGCGCTCGCGACGGAGTTCGCCTCGCGGGAAGGCCTGACGCTCTAG
Upstream 100 bases:
>100_bases CTTTTTCCGTCGTGCGGGCCCATGACGGCGCGATCTCGGTGGACGAGGGGCCGCTGGGCGGCGCACGCTTCGTCATCGAC CTGCCGGCGGGAGGCGCCGC
Downstream 100 bases:
>100_bases GCCGGCGCCGCGGCCCGTCGACCCGCTGCTTCCGCGCCGGCGTCGATGGCGGACCGGAGCTCGGAGACGAGCTGCGGCAG GAGCCGCGCCCGCGCGTCGG
Product: sensor histidine kinase
Products: NA
Alternate protein names: Blue-light-activated histidine kinase; Response regulator [H]
Number of amino acids: Translated: 631; Mature: 630
Protein sequence:
>631_residues MTAQRARLMMVDDEADILVALQDLFETTYDVSAFTSPAEALEALAGGLDPAVIVSDQRMPGMPGDRFLAEARRLCDAGAI LLTGYADLSAVTAALNGGGIVGYVPKPWEPDALKAMVAGAVEQHHLRRALGQEQALLHGLMDHLPYAVAFKDAQGRFVHL NERKAGEFGRAAAACVGLTEAELGGVVRAEERQAIAERRALQVVEERPGPAGPSWIQVEYVPLLGRAGEVETLVVMERDI TEQRLAEQQLRQSDKLRALGTLAGGVAHDFNNLLTAIVGSLELASKRLDRDPETVRRYLDNAALAAQRGASLTQRLLGFS RRTDSRLAVVDVAAAMTGMRDLLSRTLGGGVEVEWRIAADLWPTSVEPDQLEVAILNLAINARDAMPDGGVITIAARNVS LPAEADLERGLTAGDYVMLVIADTGEGMPPELLERVLEPFFTTKPVGKGTGLGLPMVYGFAQRSGGTLSIRSTPGQGTEV VMYLPRAGEADEPLPESAPAAVRRGPRARILVLDDEPGVRSVTAASLRDLGHEVVEAADGPAALAILQGGREVDLAVVDF AMPGMNGLEFVEKARRLAAGLPVILLTGYVDVEAAPDDVMVLHKPFTAATLEAAVAAALATEFASREGLTL
Sequences:
>Translated_631_residues MTAQRARLMMVDDEADILVALQDLFETTYDVSAFTSPAEALEALAGGLDPAVIVSDQRMPGMPGDRFLAEARRLCDAGAI LLTGYADLSAVTAALNGGGIVGYVPKPWEPDALKAMVAGAVEQHHLRRALGQEQALLHGLMDHLPYAVAFKDAQGRFVHL NERKAGEFGRAAAACVGLTEAELGGVVRAEERQAIAERRALQVVEERPGPAGPSWIQVEYVPLLGRAGEVETLVVMERDI TEQRLAEQQLRQSDKLRALGTLAGGVAHDFNNLLTAIVGSLELASKRLDRDPETVRRYLDNAALAAQRGASLTQRLLGFS RRTDSRLAVVDVAAAMTGMRDLLSRTLGGGVEVEWRIAADLWPTSVEPDQLEVAILNLAINARDAMPDGGVITIAARNVS LPAEADLERGLTAGDYVMLVIADTGEGMPPELLERVLEPFFTTKPVGKGTGLGLPMVYGFAQRSGGTLSIRSTPGQGTEV VMYLPRAGEADEPLPESAPAAVRRGPRARILVLDDEPGVRSVTAASLRDLGHEVVEAADGPAALAILQGGREVDLAVVDF AMPGMNGLEFVEKARRLAAGLPVILLTGYVDVEAAPDDVMVLHKPFTAATLEAAVAAALATEFASREGLTL >Mature_630_residues TAQRARLMMVDDEADILVALQDLFETTYDVSAFTSPAEALEALAGGLDPAVIVSDQRMPGMPGDRFLAEARRLCDAGAIL LTGYADLSAVTAALNGGGIVGYVPKPWEPDALKAMVAGAVEQHHLRRALGQEQALLHGLMDHLPYAVAFKDAQGRFVHLN ERKAGEFGRAAAACVGLTEAELGGVVRAEERQAIAERRALQVVEERPGPAGPSWIQVEYVPLLGRAGEVETLVVMERDIT EQRLAEQQLRQSDKLRALGTLAGGVAHDFNNLLTAIVGSLELASKRLDRDPETVRRYLDNAALAAQRGASLTQRLLGFSR RTDSRLAVVDVAAAMTGMRDLLSRTLGGGVEVEWRIAADLWPTSVEPDQLEVAILNLAINARDAMPDGGVITIAARNVSL PAEADLERGLTAGDYVMLVIADTGEGMPPELLERVLEPFFTTKPVGKGTGLGLPMVYGFAQRSGGTLSIRSTPGQGTEVV MYLPRAGEADEPLPESAPAAVRRGPRARILVLDDEPGVRSVTAASLRDLGHEVVEAADGPAALAILQGGREVDLAVVDFA MPGMNGLEFVEKARRLAAGLPVILLTGYVDVEAAPDDVMVLHKPFTAATLEAAVAAALATEFASREGLTL
Specific function: Photosensitive kinase and response regulator that is involved in increased bacterial virulence upon exposure to light [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Integral Membrane Protein. Inner Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 response regulatory domain [H]
Homologues:
Organism=Escherichia coli, GI1790436, Length=260, Percent_Identity=29.2307692307692, Blast_Score=100, Evalue=2e-22, Organism=Escherichia coli, GI87081816, Length=234, Percent_Identity=30.3418803418803, Blast_Score=92, Evalue=1e-19, Organism=Escherichia coli, GI1788549, Length=260, Percent_Identity=28.8461538461538, Blast_Score=85, Evalue=2e-17, Organism=Escherichia coli, GI48994928, Length=541, Percent_Identity=22.550831792976, Blast_Score=77, Evalue=3e-15, Organism=Escherichia coli, GI1788713, Length=185, Percent_Identity=29.7297297297297, Blast_Score=72, Evalue=2e-13, Organism=Escherichia coli, GI1790861, Length=230, Percent_Identity=31.7391304347826, Blast_Score=70, Evalue=3e-13, Organism=Escherichia coli, GI1790300, Length=253, Percent_Identity=28.4584980237154, Blast_Score=70, Evalue=5e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR011006 - InterPro: IPR001610 - InterPro: IPR000014 - InterPro: IPR000700 - InterPro: IPR013767 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 - InterPro: IPR001789 [H]
Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS; PF00072 Response_reg [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 67003; Mature: 66872
Theoretical pI: Translated: 4.55; Mature: 4.55
Prosite motif: PS50113 PAC ; PS50110 RESPONSE_REGULATORY ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAQRARLMMVDDEADILVALQDLFETTYDVSAFTSPAEALEALAGGLDPAVIVSDQRMP CCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHCCCCCEEEEECCCCC GMPGDRFLAEARRLCDAGAILLTGYADLSAVTAALNGGGIVGYVPKPWEPDALKAMVAGA CCCCHHHHHHHHHHHCCCCEEEECCHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHH VEQHHLRRALGQEQALLHGLMDHLPYAVAFKDAQGRFVHLNERKAGEFGRAAAACVGLTE HHHHHHHHHHCHHHHHHHHHHHHCCEEEEEECCCCCEEEECCCCCCCHHHHHHHHHCCCH AELGGVVRAEERQAIAERRALQVVEERPGPAGPSWIQVEYVPLLGRAGEVETLVVMERDI HHHCCCEEHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCEEEEEEECCC TEQRLAEQQLRQSDKLRALGTLAGGVAHDFNNLLTAIVGSLELASKRLDRDPETVRRYLD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH NAALAAQRGASLTQRLLGFSRRTDSRLAVVDVAAAMTGMRDLLSRTLGGGVEVEWRIAAD HHHHHHHHCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEC LWPTSVEPDQLEVAILNLAINARDAMPDGGVITIAARNVSLPAEADLERGLTAGDYVMLV CCCCCCCCCCEEEEEEEEEEECCCCCCCCCEEEEEECCCCCCCHHHHHCCCCCCCEEEEE IADTGEGMPPELLERVLEPFFTTKPVGKGTGLGLPMVYGFAQRSGGTLSIRSTPGQGTEV EECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCEE VMYLPRAGEADEPLPESAPAAVRRGPRARILVLDDEPGVRSVTAASLRDLGHEVVEAADG EEECCCCCCCCCCCCCCCCHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCC PAALAILQGGREVDLAVVDFAMPGMNGLEFVEKARRLAAGLPVILLTGYVDVEAAPDDVM CEEEEEECCCCEEEEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECEEEEECCCCCEE VLHKPFTAATLEAAVAAALATEFASREGLTL EEECCCHHHHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure TAQRARLMMVDDEADILVALQDLFETTYDVSAFTSPAEALEALAGGLDPAVIVSDQRMP CCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHCCCCCEEEEECCCCC GMPGDRFLAEARRLCDAGAILLTGYADLSAVTAALNGGGIVGYVPKPWEPDALKAMVAGA CCCCHHHHHHHHHHHCCCCEEEECCHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHH VEQHHLRRALGQEQALLHGLMDHLPYAVAFKDAQGRFVHLNERKAGEFGRAAAACVGLTE HHHHHHHHHHCHHHHHHHHHHHHCCEEEEEECCCCCEEEECCCCCCCHHHHHHHHHCCCH AELGGVVRAEERQAIAERRALQVVEERPGPAGPSWIQVEYVPLLGRAGEVETLVVMERDI HHHCCCEEHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCEEEEEEECCC TEQRLAEQQLRQSDKLRALGTLAGGVAHDFNNLLTAIVGSLELASKRLDRDPETVRRYLD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH NAALAAQRGASLTQRLLGFSRRTDSRLAVVDVAAAMTGMRDLLSRTLGGGVEVEWRIAAD HHHHHHHHCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEC LWPTSVEPDQLEVAILNLAINARDAMPDGGVITIAARNVSLPAEADLERGLTAGDYVMLV CCCCCCCCCCEEEEEEEEEEECCCCCCCCCEEEEEECCCCCCCHHHHHCCCCCCCEEEEE IADTGEGMPPELLERVLEPFFTTKPVGKGTGLGLPMVYGFAQRSGGTLSIRSTPGQGTEV EECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCEE VMYLPRAGEADEPLPESAPAAVRRGPRARILVLDDEPGVRSVTAASLRDLGHEVVEAADG EEECCCCCCCCCCCCCCCCHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCC PAALAILQGGREVDLAVVDFAMPGMNGLEFVEKARRLAAGLPVILLTGYVDVEAAPDDVM CEEEEEECCCCEEEEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECEEEEECCCCCEE VLHKPFTAATLEAAVAAALATEFASREGLTL EEECCCHHHHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA