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The map label for this gene is nifM [H]

Identifier: 197104155

GI number: 197104155

Start: 751919

End: 752719

Strand: Direct

Name: nifM [H]

Synonym: PHZ_c0689

Alternate gene names: 197104155

Gene position: 751919-752719 (Clockwise)

Preceding gene: 197104154

Following gene: 197104156

Centisome position: 18.82

GC content: 73.91

Gene sequence:

>801_bases
GTGGACGGCGTGGAGATAGACTCCCGGCTGATCGCGCAGGAAAGCCAGAACCATCCGTCCGGCGATCCCATGGAGACTTG
GACGGCCGCGGCCCGCGCCCTGGTGGTGCGCCAGCTGCTGCTGACCGAGGCCCGGCGGCGGGGGCTCAGCCCCGACCCCG
AGGCGGTCGGCGAGAACCAGTACGAGACCGACGAGGAGAGCCTCGTGCGACAGGTGCTGGAGGTCGCCGTCGAGCCCCAG
CCGCCCTCCGAGACGGAATGCCGGCGCGTCTACGAGGGGATGAAGGGCAAGTTCGTCACGCCCACCCTGTTCGAGGCCTC
GCACATCCTCATAGAGCCGGCGGGCGAGGCCGAGGCCGACTGGTCCGAAGCCGAGGCCGAGGCCCGCGCCCTCATCGGGG
TCGTCGGCGACAGCCCGCAGGCGTTCGCCGAGGCCGCGGCGGCCCGCTCGTCCTGTCCCACCGCGCACCAGGGCGGCTCG
CTCGGCCAGGTGCGCCGCGGCGAGCTGGTCGACAGCGTCCAGGCGGCGATCGAGGCCCTGGCGGACGGCGAGACCGGCAC
GGCCCCCGTGCGCTCGCCGTTCGGCTGGCACGTCGTGCGCCTGGAGCGGCGGATCGAGGGCCGCGTCCTGCCCTACGAGA
TCGTGGAGGGGCGCATCCGCGACATGCTGGAGGCGCGCGCCTGGGCGATCGGCGCTTCGCAGTTCGTGGCCGATCTGGCG
GCGAAATCGGCCGTCGAGGGCGTGACCCTGGCCCCGCCGGACGGCGGGTTCGCGGCCTGCGAGGACGGCAGCGGATGCTG
A

Upstream 100 bases:

>100_bases
CCAGGCCGCGCCCGAGCCGCCGCCGGCCGAGGCCGGCGGATGCGGCTGCGGGTCGACCGCGGCGGCCCGGCCGCGCCCGG
CCCGCACGCCTGCCGTCCGG

Downstream 100 bases:

>100_bases
CGCTCGGCGAGGTCCTCAGCCTGTCCCGCCGCTCGGCCGACGCGCTGGACGGGCTGGCGCTTGAACCGGACCTGCGGTCG
GGCCTCGCCCGGGCCGCCGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 266

Protein sequence:

>266_residues
MDGVEIDSRLIAQESQNHPSGDPMETWTAAARALVVRQLLLTEARRRGLSPDPEAVGENQYETDEESLVRQVLEVAVEPQ
PPSETECRRVYEGMKGKFVTPTLFEASHILIEPAGEAEADWSEAEAEARALIGVVGDSPQAFAEAAAARSSCPTAHQGGS
LGQVRRGELVDSVQAAIEALADGETGTAPVRSPFGWHVVRLERRIEGRVLPYEIVEGRIRDMLEARAWAIGASQFVADLA
AKSAVEGVTLAPPDGGFAACEDGSGC

Sequences:

>Translated_266_residues
MDGVEIDSRLIAQESQNHPSGDPMETWTAAARALVVRQLLLTEARRRGLSPDPEAVGENQYETDEESLVRQVLEVAVEPQ
PPSETECRRVYEGMKGKFVTPTLFEASHILIEPAGEAEADWSEAEAEARALIGVVGDSPQAFAEAAAARSSCPTAHQGGS
LGQVRRGELVDSVQAAIEALADGETGTAPVRSPFGWHVVRLERRIEGRVLPYEIVEGRIRDMLEARAWAIGASQFVADLA
AKSAVEGVTLAPPDGGFAACEDGSGC
>Mature_266_residues
MDGVEIDSRLIAQESQNHPSGDPMETWTAAARALVVRQLLLTEARRRGLSPDPEAVGENQYETDEESLVRQVLEVAVEPQ
PPSETECRRVYEGMKGKFVTPTLFEASHILIEPAGEAEADWSEAEAEARALIGVVGDSPQAFAEAAAARSSCPTAHQGGS
LGQVRRGELVDSVQAAIEALADGETGTAPVRSPFGWHVVRLERRIEGRVLPYEIVEGRIRDMLEARAWAIGASQFVADLA
AKSAVEGVTLAPPDGGFAACEDGSGC

Specific function: Required for the activation and stabilization of the iron-component (nifH) of nitrogenase. Probable PPIase [H]

COG id: COG0760

COG function: function code O; Parvulin-like peptidyl-prolyl isomerase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PpiC domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014282
- InterPro:   IPR000297
- InterPro:   IPR023058
- InterPro:   IPR008880 [H]

Pfam domain/function: PF00639 Rotamase [H]

EC number: NA

Molecular weight: Translated: 28401; Mature: 28401

Theoretical pI: Translated: 4.27; Mature: 4.27

Prosite motif: PS01096 PPIC_PPIASE_1 ; PS50198 PPIC_PPIASE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDGVEIDSRLIAQESQNHPSGDPMETWTAAARALVVRQLLLTEARRRGLSPDPEAVGENQ
CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCC
YETDEESLVRQVLEVAVEPQPPSETECRRVYEGMKGKFVTPTLFEASHILIEPAGEAEAD
CCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCHHHCCCEEEEECCCCCCCC
WSEAEAEARALIGVVGDSPQAFAEAAAARSSCPTAHQGGSLGQVRRGELVDSVQAAIEAL
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
ADGETGTAPVRSPFGWHVVRLERRIEGRVLPYEIVEGRIRDMLEARAWAIGASQFVADLA
HCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AKSAVEGVTLAPPDGGFAACEDGSGC
HHHHHCCCEECCCCCCEEECCCCCCC
>Mature Secondary Structure
MDGVEIDSRLIAQESQNHPSGDPMETWTAAARALVVRQLLLTEARRRGLSPDPEAVGENQ
CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCC
YETDEESLVRQVLEVAVEPQPPSETECRRVYEGMKGKFVTPTLFEASHILIEPAGEAEAD
CCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCHHHCCCEEEEECCCCCCCC
WSEAEAEARALIGVVGDSPQAFAEAAAARSSCPTAHQGGSLGQVRRGELVDSVQAAIEAL
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
ADGETGTAPVRSPFGWHVVRLERRIEGRVLPYEIVEGRIRDMLEARAWAIGASQFVADLA
HCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AKSAVEGVTLAPPDGGFAACEDGSGC
HHHHHCCCEECCCCCCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1885524 [H]