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The map label for this gene is nirS [H]

Identifier: 195952717

GI number: 195952717

Start: 297010

End: 298656

Strand: Direct

Name: nirS [H]

Synonym: HY04AAS1_0339

Alternate gene names: 195952717

Gene position: 297010-298656 (Clockwise)

Preceding gene: 195952702

Following gene: 195952718

Centisome position: 19.05

GC content: 40.38

Gene sequence:

>1647_bases
ATGGTAAAGAAGTTTCTCCTCTTAGGTACCGTTTTCGGGGCTTTCATGTTCGTTGGTAAGGAGGCTGTATCACAAGATTC
GGTTCCAAATTCCGCAAAGCAGGATACACAGCCTCTTACGAAGCAAGAGTACGAGATGGCAAAACAAATCTATTTCAATA
GGTGTGCCGGTTGCCACGGTGAACTTAGAACTGGTGCAATAGGACCCGCTCTTACACCAGACAAAATGAAACAGCTTGGT
ATTCAAAACATAGAAACATTTATTACGTATGGGTCTCCAAAAGGCATGCCAGACTGGGGAAAATCTGGTGTTCTTACACC
GGAACAAATAAGTGTAATGGCGAGGTTTTTACAGCTTCCTCCACCAAGTCCCCCAGAATTTGATCTTCCAGATATAGAAA
AAACATGGCAACTCATAGTGCCAGTAAACCAAAGACCAAAAACTCCGTTAACCAATAAAGATATATCAAATTATATGGGT
GTCGTGCTCCGTTCGGCGAATGAAGCCGCTATAATTGATGATGCCACCAAAAAACCAGTAGCCATATTAAAAACCGGACA
TGCTTTACACATACTAAGGGCTGATGCTTCTGGAGAATACTTTTACTCTATAGGAAGAGATGGCAAGGTCAGTCTAATAG
ACCTTTACTATAAACACCCAAAGATAGTAGCTCAGATAAAAGCCTGCTACGATGCCAGATCTGTAGAGGTTAGTCTTTAC
CATGGTAAAGAGGGTGATTATAGGGATAAATATGCTATAGTAGGATGCTATTGGCCACCTCAATTTGTCATCCTTGATGG
ATCTACTTTGAAACCGCTCAAGGTTGTATCTACCGTAGGCTATCAAGTAGGTACAGGAAAGTTTATAAGGGATCCAAGGG
TTGCAGCTATAGTAGCTTCTTACTTTCATCCTGAATGGATAGTAAACGTAAAAGAAACTGGCCAGATATGGATAGTGAAT
TATAAAGATCTCAAAAATCTCAAGATTACTATGGTTGATGCCGCACCGTTCTTACACGATGGGGGATGGAACTCAACAAA
ACGATACTTCTTAGCCGCCGCCAACGCCAGCAATAAAATAGCTGTGCTTGATGCTAAAAAAGATAAATTAGCTAAATTGA
TAGATACTCCAAAACTTCCTCATCCTGGTAGAGGTGCCAACATATACAATCCTAAGTACGGTCCTCTTTATTGTTCTTCT
TTTATCGGACAAGGCGTAGTAGCATGTATAGGCACCGATCCAAAGCATCACCCTCAGTATGCATGGAAAGTAGTAAAGAT
AATAAAACTACCTGGAGAAGGTGGTGGTTCTTTGTTTATCAAGACGAACCCACACGTGCATTATATGTTTGTGGATAGAA
CTCTAAATCCAGATCAAAAACTTCAAAGACAATTTTACGCTATAGATACAAGAACCCTTAAGGTCGTCCATACGTTCAAC
ATGCCTAAGGATCTCAAAGGAAGATTTGTGGATTTTGATTTTAACAAACAAGGCACCGAATTGTGGGTTTCTGACTGGGA
TAAAGAAGGGGCTATACTGATATACAATCCAAACACATTCAAATTAGAAGATGTGATAAAAGGCAAATGGGTAATATCCC
CCACAGGTAAGTTCAACGTTTATAACACCGTACACGACATCTACTAA

Upstream 100 bases:

>100_bases
ATCATATATACATTTATTCACTTATTTCTATTGATTTGTATCAATGATATATATAAAATTAGCTCCTATCATATTGTTAT
AAAAATCGGAGGTTAATTTT

Downstream 100 bases:

>100_bases
TATGAGAATTAGGTTAATTTTTCTTAGCTTGCTTCTTTGCTGTCCATTGCTATCCTCCTTCTCCTCTCCAGCAAGTCTGG
GGGGAGATTTATACAAAGAC

Product: Hydroxylamine reductase

Products: NA

Alternate protein names: Cytochrome cd1; Cytochrome oxidase; Hydroxylamine reductase [H]

Number of amino acids: Translated: 548; Mature: 548

Protein sequence:

>548_residues
MVKKFLLLGTVFGAFMFVGKEAVSQDSVPNSAKQDTQPLTKQEYEMAKQIYFNRCAGCHGELRTGAIGPALTPDKMKQLG
IQNIETFITYGSPKGMPDWGKSGVLTPEQISVMARFLQLPPPSPPEFDLPDIEKTWQLIVPVNQRPKTPLTNKDISNYMG
VVLRSANEAAIIDDATKKPVAILKTGHALHILRADASGEYFYSIGRDGKVSLIDLYYKHPKIVAQIKACYDARSVEVSLY
HGKEGDYRDKYAIVGCYWPPQFVILDGSTLKPLKVVSTVGYQVGTGKFIRDPRVAAIVASYFHPEWIVNVKETGQIWIVN
YKDLKNLKITMVDAAPFLHDGGWNSTKRYFLAAANASNKIAVLDAKKDKLAKLIDTPKLPHPGRGANIYNPKYGPLYCSS
FIGQGVVACIGTDPKHHPQYAWKVVKIIKLPGEGGGSLFIKTNPHVHYMFVDRTLNPDQKLQRQFYAIDTRTLKVVHTFN
MPKDLKGRFVDFDFNKQGTELWVSDWDKEGAILIYNPNTFKLEDVIKGKWVISPTGKFNVYNTVHDIY

Sequences:

>Translated_548_residues
MVKKFLLLGTVFGAFMFVGKEAVSQDSVPNSAKQDTQPLTKQEYEMAKQIYFNRCAGCHGELRTGAIGPALTPDKMKQLG
IQNIETFITYGSPKGMPDWGKSGVLTPEQISVMARFLQLPPPSPPEFDLPDIEKTWQLIVPVNQRPKTPLTNKDISNYMG
VVLRSANEAAIIDDATKKPVAILKTGHALHILRADASGEYFYSIGRDGKVSLIDLYYKHPKIVAQIKACYDARSVEVSLY
HGKEGDYRDKYAIVGCYWPPQFVILDGSTLKPLKVVSTVGYQVGTGKFIRDPRVAAIVASYFHPEWIVNVKETGQIWIVN
YKDLKNLKITMVDAAPFLHDGGWNSTKRYFLAAANASNKIAVLDAKKDKLAKLIDTPKLPHPGRGANIYNPKYGPLYCSS
FIGQGVVACIGTDPKHHPQYAWKVVKIIKLPGEGGGSLFIKTNPHVHYMFVDRTLNPDQKLQRQFYAIDTRTLKVVHTFN
MPKDLKGRFVDFDFNKQGTELWVSDWDKEGAILIYNPNTFKLEDVIKGKWVISPTGKFNVYNTVHDIY
>Mature_548_residues
MVKKFLLLGTVFGAFMFVGKEAVSQDSVPNSAKQDTQPLTKQEYEMAKQIYFNRCAGCHGELRTGAIGPALTPDKMKQLG
IQNIETFITYGSPKGMPDWGKSGVLTPEQISVMARFLQLPPPSPPEFDLPDIEKTWQLIVPVNQRPKTPLTNKDISNYMG
VVLRSANEAAIIDDATKKPVAILKTGHALHILRADASGEYFYSIGRDGKVSLIDLYYKHPKIVAQIKACYDARSVEVSLY
HGKEGDYRDKYAIVGCYWPPQFVILDGSTLKPLKVVSTVGYQVGTGKFIRDPRVAAIVASYFHPEWIVNVKETGQIWIVN
YKDLKNLKITMVDAAPFLHDGGWNSTKRYFLAAANASNKIAVLDAKKDKLAKLIDTPKLPHPGRGANIYNPKYGPLYCSS
FIGQGVVACIGTDPKHHPQYAWKVVKIIKLPGEGGGSLFIKTNPHVHYMFVDRTLNPDQKLQRQFYAIDTRTLKVVHTFN
MPKDLKGRFVDFDFNKQGTELWVSDWDKEGAILIYNPNTFKLEDVIKGKWVISPTGKFNVYNTVHDIY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 cytochrome c domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009056
- InterPro:   IPR003088
- InterPro:   IPR011048
- InterPro:   IPR003143 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: =1.7.2.1; =1.7.99.1 [H]

Molecular weight: Translated: 61437; Mature: 61437

Theoretical pI: Translated: 9.66; Mature: 9.66

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVKKFLLLGTVFGAFMFVGKEAVSQDSVPNSAKQDTQPLTKQEYEMAKQIYFNRCAGCHG
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
ELRTGAIGPALTPDKMKQLGIQNIETFITYGSPKGMPDWGKSGVLTPEQISVMARFLQLP
CCCCCCCCCCCCHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCC
PPSPPEFDLPDIEKTWQLIVPVNQRPKTPLTNKDISNYMGVVLRSANEAAIIDDATKKPV
CCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHEEECCCCEEEEECCCCCCE
AILKTGHALHILRADASGEYFYSIGRDGKVSLIDLYYKHPKIVAQIKACYDARSVEVSLY
EEEECCCEEEEEEECCCCCEEEEECCCCCEEEEEEEECCCHHHHHHHHHCCCCEEEEEEE
HGKEGDYRDKYAIVGCYWPPQFVILDGSTLKPLKVVSTVGYQVGTGKFIRDPRVAAIVAS
ECCCCCCCCCEEEEEEECCCEEEEECCCCCCHHHHHHHCCEECCCCCEECCCHHHHHHHH
YFHPEWIVNVKETGQIWIVNYKDLKNLKITMVDAAPFLHDGGWNSTKRYFLAAANASNKI
HCCCEEEEEEECCCCEEEEEECCCCCEEEEEEECCCEEECCCCCCCCEEEEEEECCCCEE
AVLDAKKDKLAKLIDTPKLPHPGRGANIYNPKYGPLYCSSFIGQGVVACIGTDPKHHPQY
EEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCEEEEECCCCCCCCHH
AWKVVKIIKLPGEGGGSLFIKTNPHVHYMFVDRTLNPDQKLQRQFYAIDTRTLKVVHTFN
HEEEEEEEECCCCCCCEEEEEECCCEEEEEEECCCCHHHHHHHHHEEECCEEEEEEEEEC
MPKDLKGRFVDFDFNKQGTELWVSDWDKEGAILIYNPNTFKLEDVIKGKWVISPTGKFNV
CCHHCCCCEEEEECCCCCCEEEEECCCCCCEEEEECCCCEEEHHHHCCCEEECCCCCEEE
YNTVHDIY
ECHHHHCC
>Mature Secondary Structure
MVKKFLLLGTVFGAFMFVGKEAVSQDSVPNSAKQDTQPLTKQEYEMAKQIYFNRCAGCHG
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
ELRTGAIGPALTPDKMKQLGIQNIETFITYGSPKGMPDWGKSGVLTPEQISVMARFLQLP
CCCCCCCCCCCCHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCC
PPSPPEFDLPDIEKTWQLIVPVNQRPKTPLTNKDISNYMGVVLRSANEAAIIDDATKKPV
CCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHEEECCCCEEEEECCCCCCE
AILKTGHALHILRADASGEYFYSIGRDGKVSLIDLYYKHPKIVAQIKACYDARSVEVSLY
EEEECCCEEEEEEECCCCCEEEEECCCCCEEEEEEEECCCHHHHHHHHHCCCCEEEEEEE
HGKEGDYRDKYAIVGCYWPPQFVILDGSTLKPLKVVSTVGYQVGTGKFIRDPRVAAIVAS
ECCCCCCCCCEEEEEEECCCEEEEECCCCCCHHHHHHHCCEECCCCCEECCCHHHHHHHH
YFHPEWIVNVKETGQIWIVNYKDLKNLKITMVDAAPFLHDGGWNSTKRYFLAAANASNKI
HCCCEEEEEEECCCCEEEEEECCCCCEEEEEEECCCEEECCCCCCCCEEEEEEECCCCEE
AVLDAKKDKLAKLIDTPKLPHPGRGANIYNPKYGPLYCSSFIGQGVVACIGTDPKHHPQY
EEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCEEEEECCCCCCCCHH
AWKVVKIIKLPGEGGGSLFIKTNPHVHYMFVDRTLNPDQKLQRQFYAIDTRTLKVVHTFN
HEEEEEEEECCCCCCCEEEEEECCCEEEEEEECCCCHHHHHHHHHEEECCEEEEEEEEEC
MPKDLKGRFVDFDFNKQGTELWVSDWDKEGAILIYNPNTFKLEDVIKGKWVISPTGKFNV
CCHHCCCCEEEEECCCCCCEEEEECCCCCCEEEEECCCCEEEHHHHCCCEEECCCCCEEE
YNTVHDIY
ECHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2506077; 10984043; 2155133; 2152881; 9331415; 9760233; 10329702; 11226222; 11563915 [H]