Click here to switch to the map view.

The map label for this gene is 195952676

Identifier: 195952676

GI number: 195952676

Start: 257660

End: 257899

Strand: Direct

Name: 195952676

Synonym: HY04AAS1_0298

Alternate gene names: NA

Gene position: 257660-257899 (Clockwise)

Preceding gene: 195952675

Following gene: 195952677

Centisome position: 16.52

GC content: 40.83

Gene sequence:

>240_bases
ATGAGCCAAGCTAAGGATCTTGTGGAAATCTTCGCAAAAAGCCTAGTAGAGGACTTATCAAAGGTAAACGTAGTTGAAGT
CGAGGGAGAACAAACCGTTGTTATAGAGTTAAGGGTTGGCCCTCAAGATATAGGTAAGGTTATAGGTAAACAAGGGCGCA
TAGCCAAGGCTCTGAGAACACTTGTATCGGCTATGGGTAGAAAAAGCGGCAAAAAATATATGTTAGAGATTATAGAGTAA

Upstream 100 bases:

>100_bases
CAGTGGATTAGAAAGGGTGCTCAGCTTTCCGATAGGGTGAAAGCTATCTTGAAACAAGCCAACGCTAACGTTAATGCAAA
TTCTTAATAGGAGGTAATGT

Downstream 100 bases:

>100_bases
TAATTTTATAAGACGATTCGCCCATTACTTGTGTGGGCGGTGTTTGTTGATAATAAAAATAAACGTTGCCTATTCTATAA
AATTTACTATATTTATATTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 79; Mature: 78

Protein sequence:

>79_residues
MSQAKDLVEIFAKSLVEDLSKVNVVEVEGEQTVVIELRVGPQDIGKVIGKQGRIAKALRTLVSAMGRKSGKKYMLEIIE

Sequences:

>Translated_79_residues
MSQAKDLVEIFAKSLVEDLSKVNVVEVEGEQTVVIELRVGPQDIGKVIGKQGRIAKALRTLVSAMGRKSGKKYMLEIIE
>Mature_78_residues
SQAKDLVEIFAKSLVEDLSKVNVVEVEGEQTVVIELRVGPQDIGKVIGKQGRIAKALRTLVSAMGRKSGKKYMLEIIE

Specific function: Unknown

COG id: COG1837

COG function: function code R; Predicted RNA-binding protein (contains KH domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 KH domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009019
- InterPro:   IPR020627 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 8669; Mature: 8538

Theoretical pI: Translated: 9.76; Mature: 9.76

Prosite motif: PS50084 KH_TYPE_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQAKDLVEIFAKSLVEDLSKVNVVEVEGEQTVVIELRVGPQDIGKVIGKQGRIAKALRT
CCHHHHHHHHHHHHHHHHHHHCCEEEECCCEEEEEEEECCHHHHHHHHCCCCHHHHHHHH
LVSAMGRKSGKKYMLEIIE
HHHHHCCCCCHHHHHHCCC
>Mature Secondary Structure 
SQAKDLVEIFAKSLVEDLSKVNVVEVEGEQTVVIELRVGPQDIGKVIGKQGRIAKALRT
CHHHHHHHHHHHHHHHHHHHCCEEEECCCEEEEEEEECCHHHHHHHHCCCCHHHHHHHH
LVSAMGRKSGKKYMLEIIE
HHHHHCCCCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]