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The map label for this gene is yhjC [H]

Identifier: 194737898

GI number: 194737898

Start: 1743121

End: 1744026

Strand: Reverse

Name: yhjC [H]

Synonym: SeSA_A1802

Alternate gene names: 194737898

Gene position: 1744026-1743121 (Counterclockwise)

Preceding gene: 194737751

Following gene: 194735923

Centisome position: 37.04

GC content: 54.97

Gene sequence:

>906_bases
ATGGACAAGCTGGAAGCGATGCAGGTCTATGTTTGCGTAGTGGATACCCATAGTTTTATCAGAGCCGCCGAAGTGCTGGG
CGTGCCGCGCTCAACGGTATCGCGGGTGGTTAAAGAACTGGAATCCTGGCTTAAGATTCAGCTTTTGCAACGTACAACCC
GCAAACTTAGCGTGACCGCAGAGGGGCGGCGTTACTACGAAGAGTGCAAAAGAGTACTGGCAGATATCGCGGCCATGGAG
TCGTCATTTCCCGGCCGGGCGGCACAACCCAAAGGGCGTTTTAAAGTAGGGATGCCGCAATCTCTCGCCCGGCATTGCAT
TATTCCCACGCTCCCGGCCTTTTTGCGCCAGTATCCGGAGCTGGAGCTGATACTTTGTTCCAGCGATAGCGTGGAGGATA
TTATCCTGCAAGGGTATGACTGCGTGATTCGGGCCGGCAGGATCGATGATTCCACCACGCTGGTTGCCCGTCCACTTGCC
AGCTTTAACTGGGTGATAGCAGCATCGCCCACTTACATTGAGCGTTACGGTAGCCCTGAAAATTTAGATGATCTGCAAAA
ACACCATGCGGTCGGCTACCTGAACCACCGCACTGGGCGTACCACCGACTGGTTTTTTACGCGTGAGGGGAAGGATTACG
CGATGCGGGTGCAGGAGACGCTGGTTGTCGATGATACGGACGCTTATATTCAGGCCGGAATACAGGGGCTGGGGTTAATT
CGCGTCGCCAGCTATCTGGTTGCGCCGTATCTGCACAGTGGGGCGCTGGTGACCTGCATGGACAACCATTCTTATGATTT
GCCGCTTGCGCTGGTCTATCCGCAAAACAGGTTTCTGCCGCCTACGGTACGCGCTTTTTATGACTGGTGCAAAACGGCGC
TGAGCCAGCCGGAGTCTCTTCGCTAA

Upstream 100 bases:

>100_bases
TTCACCTGTAGATTAAAGATTACGTCAGGGTTCTGCGTTCGATAAGACGCCGAAGACGGGTTAGACTGTTCTGATAAATG
GGATAATTGGCGGGGGGAAA

Downstream 100 bases:

>100_bases
AAAATATTATTCCGGATATCGCATTGCCTGTTTAGAAAACTTTTTCACAGACGGTCAAAATGACGGTACTGGTTTTGACG
CATAAGTAAAAGGCATTATC

Product: regulatory protein LysR:LysR, substrate-binding

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MDKLEAMQVYVCVVDTHSFIRAAEVLGVPRSTVSRVVKELESWLKIQLLQRTTRKLSVTAEGRRYYEECKRVLADIAAME
SSFPGRAAQPKGRFKVGMPQSLARHCIIPTLPAFLRQYPELELILCSSDSVEDIILQGYDCVIRAGRIDDSTTLVARPLA
SFNWVIAASPTYIERYGSPENLDDLQKHHAVGYLNHRTGRTTDWFFTREGKDYAMRVQETLVVDDTDAYIQAGIQGLGLI
RVASYLVAPYLHSGALVTCMDNHSYDLPLALVYPQNRFLPPTVRAFYDWCKTALSQPESLR

Sequences:

>Translated_301_residues
MDKLEAMQVYVCVVDTHSFIRAAEVLGVPRSTVSRVVKELESWLKIQLLQRTTRKLSVTAEGRRYYEECKRVLADIAAME
SSFPGRAAQPKGRFKVGMPQSLARHCIIPTLPAFLRQYPELELILCSSDSVEDIILQGYDCVIRAGRIDDSTTLVARPLA
SFNWVIAASPTYIERYGSPENLDDLQKHHAVGYLNHRTGRTTDWFFTREGKDYAMRVQETLVVDDTDAYIQAGIQGLGLI
RVASYLVAPYLHSGALVTCMDNHSYDLPLALVYPQNRFLPPTVRAFYDWCKTALSQPESLR
>Mature_301_residues
MDKLEAMQVYVCVVDTHSFIRAAEVLGVPRSTVSRVVKELESWLKIQLLQRTTRKLSVTAEGRRYYEECKRVLADIAAME
SSFPGRAAQPKGRFKVGMPQSLARHCIIPTLPAFLRQYPELELILCSSDSVEDIILQGYDCVIRAGRIDDSTTLVARPLA
SFNWVIAASPTYIERYGSPENLDDLQKHHAVGYLNHRTGRTTDWFFTREGKDYAMRVQETLVVDDTDAYIQAGIQGLGLI
RVASYLVAPYLHSGALVTCMDNHSYDLPLALVYPQNRFLPPTVRAFYDWCKTALSQPESLR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=297, Percent_Identity=34.6801346801347, Blast_Score=189, Evalue=2e-49,
Organism=Escherichia coli, GI1786401, Length=288, Percent_Identity=35.4166666666667, Blast_Score=169, Evalue=3e-43,
Organism=Escherichia coli, GI1787128, Length=285, Percent_Identity=29.4736842105263, Blast_Score=139, Evalue=3e-34,
Organism=Escherichia coli, GI1789639, Length=291, Percent_Identity=28.1786941580756, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1787589, Length=291, Percent_Identity=25.7731958762887, Blast_Score=118, Evalue=4e-28,
Organism=Escherichia coli, GI87081978, Length=257, Percent_Identity=29.5719844357977, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1789440, Length=298, Percent_Identity=24.496644295302, Blast_Score=105, Evalue=5e-24,
Organism=Escherichia coli, GI1789173, Length=260, Percent_Identity=27.3076923076923, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI1786448, Length=298, Percent_Identity=23.8255033557047, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788706, Length=261, Percent_Identity=24.904214559387, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788748, Length=152, Percent_Identity=30.2631578947368, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34024; Mature: 34024

Theoretical pI: Translated: 7.46; Mature: 7.46

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKLEAMQVYVCVVDTHSFIRAAEVLGVPRSTVSRVVKELESWLKIQLLQRTTRKLSVTA
CCCHHEEEEEEEEECCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEE
EGRRYYEECKRVLADIAAMESSFPGRAAQPKGRFKVGMPQSLARHCIIPTLPAFLRQYPE
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCHHHHHHCCCCCHHHHHHHCCC
LELILCSSDSVEDIILQGYDCVIRAGRIDDSTTLVARPLASFNWVIAASPTYIERYGSPE
EEEEEECCCCHHHHHHCCCHHEEEECCCCCCHHHHHHHHCCCCEEEEECCHHHHHCCCCC
NLDDLQKHHAVGYLNHRTGRTTDWFFTREGKDYAMRVQETLVVDDTDAYIQAGIQGLGLI
CHHHHHHHHHCEEEECCCCCCCCEEEEECCCHHHHEEEHEEEECCCHHHHHHHHHHHHHH
RVASYLVAPYLHSGALVTCMDNHSYDLPLALVYPQNRFLPPTVRAFYDWCKTALSQPESL
HHHHHHHHHHHCCCCEEEEECCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCC
R
C
>Mature Secondary Structure
MDKLEAMQVYVCVVDTHSFIRAAEVLGVPRSTVSRVVKELESWLKIQLLQRTTRKLSVTA
CCCHHEEEEEEEEECCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEE
EGRRYYEECKRVLADIAAMESSFPGRAAQPKGRFKVGMPQSLARHCIIPTLPAFLRQYPE
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCHHHHHHCCCCCHHHHHHHCCC
LELILCSSDSVEDIILQGYDCVIRAGRIDDSTTLVARPLASFNWVIAASPTYIERYGSPE
EEEEEECCCCHHHHHHCCCHHEEEECCCCCCHHHHHHHHCCCCEEEEECCHHHHHCCCCC
NLDDLQKHHAVGYLNHRTGRTTDWFFTREGKDYAMRVQETLVVDDTDAYIQAGIQGLGLI
CHHHHHHHHHCEEEECCCCCCCCEEEEECCCHHHHEEEHEEEECCCHHHHHHHHHHHHHH
RVASYLVAPYLHSGALVTCMDNHSYDLPLALVYPQNRFLPPTVRAFYDWCKTALSQPESL
HHHHHHHHHHHCCCCEEEEECCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCC
R
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]