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The map label for this gene is nlpD [H]

Identifier: 194737503

GI number: 194737503

Start: 2971887

End: 2973020

Strand: Reverse

Name: nlpD [H]

Synonym: SeSA_A3075

Alternate gene names: 194737503

Gene position: 2973020-2971887 (Counterclockwise)

Preceding gene: 194737427

Following gene: 194738113

Centisome position: 63.13

GC content: 52.03

Gene sequence:

>1134_bases
ATGAGCGCGGGAAGCCCAAAATTCACCGTTAGTCGCATTGCGGCACTATCACTGGTTTCACTATGGCTGGCAGGTTGTAC
CAGTTCGTCAAACCCTCCGGCGCCGGTCACGTCTGTGGACAGTGGGTCGTCATCAAATACCAATTCCGGGATGTTGATCA
CACCGCCGCCAAAAATGGGCGCGACGACGCAACAAACGCCGCAACAAGCGCCGCAAATTCAACCCGTTCAGCGTCCTGTA
ACGCAGCCCATGCAAACTCAACCGGTCACGGAACAACCCGTGCAGATGGAAAATGGGCGAATCGTATACAATCGCCAGTA
TGGGAATATTCCGAAAGGTAGCTATACGGGTGGCAGTACTTACACCGTGAAAAAGGGTGATACGCTTTTTTACATCGCCT
GGATTACCGGGAACGATTTCCGCGATCTGGCCCAGAGAAACAGTATTTCTGCCCCGTATAGCCTGAATGTAGGGCAAACT
TTGCAAGTTGGTAACGCATCCGGTACGCCAATTACTGGCGGAAATGCGATCACCCAGGCGGATGCAGCACAGCAAGGAGT
TGTGACCAGGTCTGCACAAAATTCCACCGTTGCAGTTGCGTCTCAACCAACAATTACGTATTCTGAGCACTCAGGTGAAC
AAAGTGCTAACAAAATGTTGCCAAACAACAAGCCTGCTGGGACGGTTGTCACAGCGCCTGTAACGGCACCAACGGTAAGC
ACGACCGAACCAAATGCAAGCAGTACGTCAACCAGCGCGCCGATTTCCGCATGGCGCTGGCCGACGGATGGCAAAGTGAT
CGAAAACTTTGGCGCTTCCGAAGGGGGCAATAAAGGGATCGACATTGCAGGCAGTAAGGGACAGGCTATCGTCGCAACCG
CTGATGGGCGCGTCGTATATGCCGGTAACGCACTGCGTGGTTACGGTAATCTTATTATCATCAAACATAACGATGATTAC
CTGAGTGCCTACGCCCATAATGATACGATGCTGGTCCGGGAACAACAGGAAGTTAAGGCGGGGCAAAAAATCGCTACTAT
GGGTAGCACCGGCACCAGCTCTACACGCTTGCATTTTGAAATTCGTTACAAGGGGAAATCCGTAAACCCGCTGCGTTATT
TACCGCAGCGATAA

Upstream 100 bases:

>100_bases
TGGGTTAAGCGTATCGTGAACACATTTTCCCGTGTTCACTTAATGCGTTGCACGGTTCTTACGTCACTGGTTGTTAACCA
AATTTTTTCCTGGGGGATAA

Downstream 100 bases:

>100_bases
AGCGGCGGAACCAGGCTTTGACTTGCTAGTTCCGTCAAGGGATCACGGGTAGGAGCCACCTTATGAGTCAGAATACGCTG
AAAGTTCATGATTTAAATGA

Product: lipoprotein NlpD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 377; Mature: 376

Protein sequence:

>377_residues
MSAGSPKFTVSRIAALSLVSLWLAGCTSSSNPPAPVTSVDSGSSSNTNSGMLITPPPKMGATTQQTPQQAPQIQPVQRPV
TQPMQTQPVTEQPVQMENGRIVYNRQYGNIPKGSYTGGSTYTVKKGDTLFYIAWITGNDFRDLAQRNSISAPYSLNVGQT
LQVGNASGTPITGGNAITQADAAQQGVVTRSAQNSTVAVASQPTITYSEHSGEQSANKMLPNNKPAGTVVTAPVTAPTVS
TTEPNASSTSTSAPISAWRWPTDGKVIENFGASEGGNKGIDIAGSKGQAIVATADGRVVYAGNALRGYGNLIIIKHNDDY
LSAYAHNDTMLVREQQEVKAGQKIATMGSTGTSSTRLHFEIRYKGKSVNPLRYLPQR

Sequences:

>Translated_377_residues
MSAGSPKFTVSRIAALSLVSLWLAGCTSSSNPPAPVTSVDSGSSSNTNSGMLITPPPKMGATTQQTPQQAPQIQPVQRPV
TQPMQTQPVTEQPVQMENGRIVYNRQYGNIPKGSYTGGSTYTVKKGDTLFYIAWITGNDFRDLAQRNSISAPYSLNVGQT
LQVGNASGTPITGGNAITQADAAQQGVVTRSAQNSTVAVASQPTITYSEHSGEQSANKMLPNNKPAGTVVTAPVTAPTVS
TTEPNASSTSTSAPISAWRWPTDGKVIENFGASEGGNKGIDIAGSKGQAIVATADGRVVYAGNALRGYGNLIIIKHNDDY
LSAYAHNDTMLVREQQEVKAGQKIATMGSTGTSSTRLHFEIRYKGKSVNPLRYLPQR
>Mature_376_residues
SAGSPKFTVSRIAALSLVSLWLAGCTSSSNPPAPVTSVDSGSSSNTNSGMLITPPPKMGATTQQTPQQAPQIQPVQRPVT
QPMQTQPVTEQPVQMENGRIVYNRQYGNIPKGSYTGGSTYTVKKGDTLFYIAWITGNDFRDLAQRNSISAPYSLNVGQTL
QVGNASGTPITGGNAITQADAAQQGVVTRSAQNSTVAVASQPTITYSEHSGEQSANKMLPNNKPAGTVVTAPVTAPTVST
TEPNASSTSTSAPISAWRWPTDGKVIENFGASEGGNKGIDIAGSKGQAIVATADGRVVYAGNALRGYGNLIIIKHNDDYL
SAYAHNDTMLVREQQEVKAGQKIATMGSTGTSSTRLHFEIRYKGKSVNPLRYLPQR

Specific function: May be involved in stationary-phase survival [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1789099, Length=380, Percent_Identity=84.7368421052632, Blast_Score=575, Evalue=1e-165,
Organism=Escherichia coli, GI87082174, Length=265, Percent_Identity=43.3962264150943, Blast_Score=205, Evalue=5e-54,
Organism=Escherichia coli, GI87082297, Length=138, Percent_Identity=36.231884057971, Blast_Score=82, Evalue=5e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 39722; Mature: 39590

Theoretical pI: Translated: 9.93; Mature: 9.93

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAGSPKFTVSRIAALSLVSLWLAGCTSSSNPPAPVTSVDSGSSSNTNSGMLITPPPKMG
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCEEEECCCCCC
ATTQQTPQQAPQIQPVQRPVTQPMQTQPVTEQPVQMENGRIVYNRQYGNIPKGSYTGGST
CCCCCCHHHCCCCCCCHHHHCCCCCCCCCCCCCEEECCCEEEEEECCCCCCCCCCCCCCE
YTVKKGDTLFYIAWITGNDFRDLAQRNSISAPYSLNVGQTLQVGNASGTPITGGNAITQA
EEEECCCEEEEEEEEECCCHHHHHHHCCCCCCEEECCCCEEEECCCCCCEECCCCCEECC
DAAQQGVVTRSAQNSTVAVASQPTITYSEHSGEQSANKMLPNNKPAGTVVTAPVTAPTVS
HHHHCCCEEECCCCCEEEEECCCEEEECCCCCCHHHHHCCCCCCCCCEEEECCCCCCEEC
TTEPNASSTSTSAPISAWRWPTDGKVIENFGASEGGNKGIDIAGSKGQAIVATADGRVVY
CCCCCCCCCCCCCCCEEEECCCCCHHHHHCCCCCCCCCCEEEECCCCCEEEEECCCEEEE
AGNALRGYGNLIIIKHNDDYLSAYAHNDTMLVREQQEVKAGQKIATMGSTGTSSTRLHFE
ECCCCCCCCCEEEEEECCCEEEEEECCCEEEEECHHHHHCCCEEEEECCCCCCCEEEEEE
IRYKGKSVNPLRYLPQR
EEECCCCCCHHHCCCCC
>Mature Secondary Structure 
SAGSPKFTVSRIAALSLVSLWLAGCTSSSNPPAPVTSVDSGSSSNTNSGMLITPPPKMG
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCEEEECCCCCC
ATTQQTPQQAPQIQPVQRPVTQPMQTQPVTEQPVQMENGRIVYNRQYGNIPKGSYTGGST
CCCCCCHHHCCCCCCCHHHHCCCCCCCCCCCCCEEECCCEEEEEECCCCCCCCCCCCCCE
YTVKKGDTLFYIAWITGNDFRDLAQRNSISAPYSLNVGQTLQVGNASGTPITGGNAITQA
EEEECCCEEEEEEEEECCCHHHHHHHCCCCCCEEECCCCEEEECCCCCCEECCCCCEECC
DAAQQGVVTRSAQNSTVAVASQPTITYSEHSGEQSANKMLPNNKPAGTVVTAPVTAPTVS
HHHHCCCEEECCCCCEEEEECCCEEEECCCCCCHHHHHCCCCCCCCCEEEECCCCCCEEC
TTEPNASSTSTSAPISAWRWPTDGKVIENFGASEGGNKGIDIAGSKGQAIVATADGRVVY
CCCCCCCCCCCCCCCEEEECCCCCHHHHHCCCCCCCCCCEEEECCCCCEEEEECCCEEEE
AGNALRGYGNLIIIKHNDDYLSAYAHNDTMLVREQQEVKAGQKIATMGSTGTSSTRLHFE
ECCCCCCCCCEEEEEECCCEEEEEECCCEEEEECHHHHHCCCEEEEECCCCCCCEEEEEE
IRYKGKSVNPLRYLPQR
EEECCCCCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9973354 [H]